RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, human

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-215	ENST00000540904	MAP3K10	Q02779	954 aa		11.14	□□□□□ -0.63
SNHG1-215	ENST00000540904	NUCB1	Q02818	461 aa		11.14	□□□□□ -0.63
SNHG1-215	ENST00000540904	UBE3C	Q15386	1083 aa		11.14	□□□□□ -0.63
SNHG1-215	ENST00000540904	ERO1B	Q86YB8	467 aa		11.14	□□□□□ -0.63
SNHG1-215	ENST00000540904	LCORL	Q8N3X6	602 aa		11.14	□□□□□ -0.63
SNHG1-215	ENST00000540904	TRIM34	Q9BYJ4	488 aa		11.14	□□□□□ -0.63
SNHG1-215	ENST00000540904	CRNKL1	Q9BZJ0	848 aa	Known RBP	11.14	□□□□□ -0.63
SNHG1-215	ENST00000540904	ARMT1	Q9H993	441 aa		11.14	□□□□□ -0.63
SNHG1-215	ENST00000540904	PICK1	Q9NRD5	415 aa		11.14	□□□□□ -0.63
SNHG1-215	ENST00000540904	RNF186	Q9NXI6	227 aa		11.14	□□□□□ -0.63
SNHG1-215	ENST00000540904	STAP2	Q9UGK3	403 aa		11.14	□□□□□ -0.63
SNHG1-215	ENST00000540904	COL2A1	P02458	1487 aa	Predicted RBP	11.13	□□□□□ -0.63
SNHG1-215	ENST00000540904	MYO5A	Q9Y4I1	1855 aa	Known RBP	11.13	□□□□□ -0.63
SNHG1-215	ENST00000540904	TBC1D12	O60347	775 aa		11.13	□□□□□ -0.63
SNHG1-215	ENST00000540904	HLA-DOA	P06340	250 aa		11.13	□□□□□ -0.63
SNHG1-215	ENST00000540904	INHBE	P58166	350 aa		11.13	□□□□□ -0.63
SNHG1-215	ENST00000540904	NOL9	Q5SY16	702 aa	Known RBP	11.13	□□□□□ -0.63
SNHG1-215	ENST00000540904	SCYL3	Q8IZE3	742 aa		11.13	□□□□□ -0.63
SNHG1-215	ENST00000540904	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	11.13	□□□□□ -0.63
SNHG1-215	ENST00000540904	SDR42E1	Q8WUS8	393 aa		11.13	□□□□□ -0.63
SNHG1-215	ENST00000540904	FSD1	Q9BTV5	496 aa		11.13	□□□□□ -0.63
SNHG1-215	ENST00000540904	SAGE1	Q9NXZ1	904 aa		11.13	□□□□□ -0.63
SNHG1-215	ENST00000540904	DOCK2	Q92608	1830 aa		11.12	□□□□□ -0.63
SNHG1-215	ENST00000540904	IRF6	O14896	467 aa		11.12	□□□□□ -0.63
SNHG1-215	ENST00000540904	RNF113A	O15541	343 aa	Known RBP	11.12	□□□□□ -0.63
SNHG1-215	ENST00000540904	PRKAB2	O43741	272 aa		11.12	□□□□□ -0.63
SNHG1-215	ENST00000540904	CTNND1	O60716	968 aa	Known RBP	11.12	□□□□□ -0.63
SNHG1-215	ENST00000540904	ZFY	P08048	801 aa	Predicted RBP	11.12	□□□□□ -0.63
SNHG1-215	ENST00000540904	GTF2A2	P52657	109 aa		11.12	□□□□□ -0.63
SNHG1-215	ENST00000540904	LRRFIP1	Q32MZ4	808 aa	Known RBP	11.12	□□□□□ -0.63
SNHG1-215	ENST00000540904	COL13A1	Q5TAT6	717 aa	Predicted RBP	11.12	□□□□□ -0.63
SNHG1-215	ENST00000540904	IFNL1	Q8IU54	200 aa		11.12	□□□□□ -0.63
SNHG1-215	ENST00000540904	FOXP4	Q8IVH2	680 aa	Predicted RBP	11.12	□□□□□ -0.63
SNHG1-215	ENST00000540904	MS4A4A	Q96JQ5	239 aa		11.12	□□□□□ -0.63
SNHG1-215	ENST00000540904	PUS7L	Q9H0K6	701 aa	Known RBP	11.12	□□□□□ -0.63
SNHG1-215	ENST00000540904	MCM9	Q9NXL9	1143 aa		11.12	□□□□□ -0.63
SNHG1-215	ENST00000540904	HERC5	Q9UII4	1024 aa	Known RBP	11.12	□□□□□ -0.63
SNHG1-215	ENST00000540904	OTOF	Q9HC10	1997 aa		11.11	□□□□□ -0.63
SNHG1-215	ENST00000540904	CCL15-CCL14	A0A0B4J2E2	113 aa		11.11	□□□□□ -0.63
SNHG1-215	ENST00000540904	IGF2BP3	O00425	579 aa	Known RBP eCLIP	11.11	□□□□□ -0.63
SNHG1-215	ENST00000540904	TBC1D8	O95759	1140 aa		11.11	□□□□□ -0.63
SNHG1-215	ENST00000540904	POLR3D	P05423	398 aa	Predicted RBP	11.11	□□□□□ -0.63
SNHG1-215	ENST00000540904	PTPRA	P18433	802 aa		11.11	□□□□□ -0.63
SNHG1-215	ENST00000540904	PPAT	Q06203	517 aa		11.11	□□□□□ -0.63
SNHG1-215	ENST00000540904	PPIL2	Q13356	520 aa		11.11	□□□□□ -0.63
SNHG1-215	ENST00000540904	SNAPC2	Q13487	334 aa		11.11	□□□□□ -0.63
SNHG1-215	ENST00000540904	CCL15	Q16663	113 aa		11.11	□□□□□ -0.63
SNHG1-215	ENST00000540904	TTC6	Q86TZ1	520 aa		11.11	□□□□□ -0.63
SNHG1-215	ENST00000540904	PLEKHM2	Q8IWE5	1019 aa		11.11	□□□□□ -0.63
SNHG1-215	ENST00000540904	APPBP2	Q92624	585 aa		11.11	□□□□□ -0.63
SNHG1-215	ENST00000540904	OSBP2	Q969R2	916 aa		11.11	□□□□□ -0.63
SNHG1-215	ENST00000540904	PTPN18	Q99952	460 aa		11.11	□□□□□ -0.63
SNHG1-215	ENST00000540904	DNAJC18	Q9H819	358 aa		11.11	□□□□□ -0.63
SNHG1-215	ENST00000540904	DCP1A	Q9NPI6	582 aa	Predicted RBP	11.11	□□□□□ -0.63
SNHG1-215	ENST00000540904	PRDM10	Q9NQV6	1147 aa		11.11	□□□□□ -0.63
SNHG1-215	ENST00000540904	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	11.11	□□□□□ -0.63
SNHG1-215	ENST00000540904	SLC4A4	Q9Y6R1	1079 aa		11.11	□□□□□ -0.63
SNHG1-215	ENST00000540904	ZHX2	Q9Y6X8	837 aa		11.11	□□□□□ -0.63
SNHG1-215	ENST00000540904	AK9	Q5TCS8	1911 aa		11.11	□□□□□ -0.63
SNHG1-215	ENST00000540904	TESPA1	A2RU30	521 aa	Predicted RBP	11.1	□□□□□ -0.63
SNHG1-215	ENST00000540904	ALDH1A1	P00352	501 aa		11.1	□□□□□ -0.63
SNHG1-215	ENST00000540904	CETP	P11597	493 aa		11.1	□□□□□ -0.63
SNHG1-215	ENST00000540904	CAP2	P40123	477 aa		11.1	□□□□□ -0.63
SNHG1-215	ENST00000540904	PLCD1	P51178	756 aa		11.1	□□□□□ -0.63
SNHG1-215	ENST00000540904	RRP1B	Q14684	758 aa	Known RBP	11.1	□□□□□ -0.63
SNHG1-215	ENST00000540904	OTUD7B	Q6GQQ9	843 aa		11.1	□□□□□ -0.63
SNHG1-215	ENST00000540904	CCDC84	Q86UT8	332 aa	Predicted RBP	11.1	□□□□□ -0.63
SNHG1-215	ENST00000540904	METTL16	Q86W50	562 aa	Known RBP	11.1	□□□□□ -0.63
SNHG1-215	ENST00000540904	BRI3BP	Q8WY22	251 aa		11.1	□□□□□ -0.63
SNHG1-215	ENST00000540904	EVI5L	Q96CN4	794 aa		11.1	□□□□□ -0.63
SNHG1-215	ENST00000540904	DDRGK1	Q96HY6	314 aa		11.1	□□□□□ -0.63
SNHG1-215	ENST00000540904	STRBP	Q96SI9	672 aa	Known RBP	11.1	□□□□□ -0.63
SNHG1-215	ENST00000540904	ATP8A2	Q9NTI2	1148 aa		11.1	□□□□□ -0.63
SNHG1-215	ENST00000540904	SERPINB13	Q9UIV8	391 aa		11.1	□□□□□ -0.63
SNHG1-215	ENST00000540904	TRIM6-TRIM34	B2RNG4	842 aa		11.09	□□□□□ -0.63
SNHG1-215	ENST00000540904		M0R2C6	588 aa		11.09	□□□□□ -0.63
SNHG1-215	ENST00000540904	GPAA1	O43292	621 aa		11.09	□□□□□ -0.63
SNHG1-215	ENST00000540904	GDF11	O95390	407 aa		11.09	□□□□□ -0.63
SNHG1-215	ENST00000540904	CYP2D6	P10635	497 aa		11.09	□□□□□ -0.63
SNHG1-215	ENST00000540904	EVX2	Q03828	476 aa		11.09	□□□□□ -0.63
SNHG1-215	ENST00000540904	RILPL2	Q969X0	211 aa		11.09	□□□□□ -0.63
SNHG1-215	ENST00000540904	EHD4	Q9H223	541 aa		11.09	□□□□□ -0.63
SNHG1-215	ENST00000540904	TRIM75P	A6NK02	468 aa		11.08	□□□□□ -0.64
SNHG1-215	ENST00000540904	USP17L12	C9JPN9	530 aa		11.08	□□□□□ -0.64
SNHG1-215	ENST00000540904	USP17L21	D6R901	530 aa		11.08	□□□□□ -0.64
SNHG1-215	ENST00000540904	CXCL11	O14625	94 aa		11.08	□□□□□ -0.64
SNHG1-215	ENST00000540904	SHROOM1	Q2M3G4	852 aa	Predicted RBP	11.08	□□□□□ -0.64
SNHG1-215	ENST00000540904	ZMYM1	Q5SVZ6	1142 aa		11.08	□□□□□ -0.64
SNHG1-215	ENST00000540904	AMOTL1	Q8IY63	956 aa		11.08	□□□□□ -0.64
SNHG1-215	ENST00000540904	FAM43A	Q8N2R8	423 aa		11.08	□□□□□ -0.64
SNHG1-215	ENST00000540904	SP7	Q8TDD2	431 aa	Predicted RBP	11.08	□□□□□ -0.64
SNHG1-215	ENST00000540904	SEC62	Q99442	399 aa	Known RBP	11.08	□□□□□ -0.64
SNHG1-215	ENST00000540904	R3HDML	Q9H3Y0	253 aa		11.08	□□□□□ -0.64
SNHG1-215	ENST00000540904	OSBPL3	Q9H4L5	887 aa		11.08	□□□□□ -0.64
SNHG1-215	ENST00000540904	KCNH4	Q9UQ05	1017 aa		11.08	□□□□□ -0.64
SNHG1-215	ENST00000540904	AFG3L2	Q9Y4W6	797 aa		11.08	□□□□□ -0.64
SNHG1-215	ENST00000540904	CYP2D7	A0A087X1C5	515 aa		11.07	□□□□□ -0.64
SNHG1-215	ENST00000540904	USP17L5	A8MUK1	530 aa		11.07	□□□□□ -0.64
SNHG1-215	ENST00000540904	BTBD19	C9JJ37	291 aa		11.07	□□□□□ -0.64
SNHG1-215	ENST00000540904	APP	P05067	770 aa		11.07	□□□□□ -0.64

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