RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 HEG1Q9ULI3 1381 aa15.9■□□□□ 0.14
USP3-204ENST00000540797 BBOX1O75936 387 aa15.9■□□□□ 0.14
USP3-204ENST00000540797 PHKA1P46020 1223 aa15.9■□□□□ 0.14
USP3-204ENST00000540797 FNBP4Q8N3X1 1017 aaPredicted RBP15.9■□□□□ 0.14
USP3-204ENST00000540797 NEK11Q8NG66 645 aa15.9■□□□□ 0.14
USP3-204ENST00000540797 KIAA0754O94854 1291 aa15.9■□□□□ 0.14
USP3-204ENST00000540797 IFT74Q96LB3 600 aa15.9■□□□□ 0.14
USP3-204ENST00000540797 ARHGEF35A5YM69 484 aa15.89■□□□□ 0.13
USP3-204ENST00000540797 PTGS1P23219 599 aa15.89■□□□□ 0.13
USP3-204ENST00000540797 VSIG10Q8N0Z9 540 aa15.89■□□□□ 0.13
USP3-204ENST00000540797 DYDC1Q8WWB3 177 aa15.89■□□□□ 0.13
USP3-204ENST00000540797 CIAO1O76071 339 aa15.89■□□□□ 0.13
USP3-204ENST00000540797 KIF4AO95239 1232 aa15.89■□□□□ 0.13
USP3-204ENST00000540797 UBXN1Q04323 297 aa15.89■□□□□ 0.13
USP3-204ENST00000540797 AZI2Q9H6S1 392 aa15.89■□□□□ 0.13
USP3-204ENST00000540797 FRMD4BQ9Y2L6 1034 aa15.89■□□□□ 0.13
USP3-204ENST00000540797 PALLDQ8WX93 1383 aa15.89■□□□□ 0.13
USP3-204ENST00000540797 ERVV-1B6SEH8 477 aa15.89■□□□□ 0.13
USP3-204ENST00000540797 AFF2P51816 1311 aa15.89■□□□□ 0.13
USP3-204ENST00000540797 CERKLQ49MI3 558 aaPredicted RBP15.89■□□□□ 0.13
USP3-204ENST00000540797 STK24Q9Y6E0 443 aa15.89■□□□□ 0.13
USP3-204ENST00000540797 hCG_1642624A0A1W2PR95 340 aa15.88■□□□□ 0.13
USP3-204ENST00000540797 HSPA4P34932 840 aa15.88■□□□□ 0.13
USP3-204ENST00000540797 ZNF354CQ86Y25 554 aa15.88■□□□□ 0.13
USP3-204ENST00000540797 DCAF17Q5H9S7 520 aaPredicted RBP15.88■□□□□ 0.13
USP3-204ENST00000540797 PAGR1Q9BTK6 254 aa15.88■□□□□ 0.13
USP3-204ENST00000540797 TTC12Q9H892 705 aaPredicted RBP15.88■□□□□ 0.13
USP3-204ENST00000540797 SEC31BQ9NQW1 1179 aa15.88■□□□□ 0.13
USP3-204ENST00000540797 GINS2Q9Y248 185 aa15.88■□□□□ 0.13
USP3-204ENST00000540797 TRAF5O00463 557 aa15.88■□□□□ 0.13
USP3-204ENST00000540797 FAM160A1Q05DH4 1040 aa15.88■□□□□ 0.13
USP3-204ENST00000540797 KRT40Q6A162 431 aa15.88■□□□□ 0.13
USP3-204ENST00000540797 FNBP1Q96RU3 617 aa15.88■□□□□ 0.13
USP3-204ENST00000540797 LRWD1Q9UFC0 647 aa15.88■□□□□ 0.13
USP3-204ENST00000540797 A0A0D9SFI3 127 aa15.88■□□□□ 0.13
USP3-204ENST00000540797 PDE4DQ08499 809 aa15.88■□□□□ 0.13
USP3-204ENST00000540797 ZNF654Q8IZM8 581 aa15.88■□□□□ 0.13
USP3-204ENST00000540797 ZSCAN10Q96SZ4 725 aaPredicted RBP15.88■□□□□ 0.13
USP3-204ENST00000540797 ATF5Q9Y2D1 282 aaPredicted RBP15.88■□□□□ 0.13
USP3-204ENST00000540797 PLA2R1Q13018 1463 aa15.88■□□□□ 0.13
USP3-204ENST00000540797 CEP135Q66GS9 1140 aa15.88■□□□□ 0.13
USP3-204ENST00000540797 CCDC91Q7Z6B0 441 aa15.88■□□□□ 0.13
USP3-204ENST00000540797 NLRP10Q86W26 655 aa15.88■□□□□ 0.13
USP3-204ENST00000540797 LMAN1P49257 510 aa15.87■□□□□ 0.13
USP3-204ENST00000540797 SEC62Q99442 399 aaKnown RBP15.87■□□□□ 0.13
USP3-204ENST00000540797 SRP68Q9UHB9 627 aaKnown RBP15.87■□□□□ 0.13
USP3-204ENST00000540797 SEMA3EO15041 775 aa15.87■□□□□ 0.13
USP3-204ENST00000540797 ADORA1P30542 326 aa15.87■□□□□ 0.13
USP3-204ENST00000540797 PPP1R2P41236 205 aa15.87■□□□□ 0.13
USP3-204ENST00000540797 BIRC3Q13489 604 aa15.87■□□□□ 0.13
USP3-204ENST00000540797 REXO1Q8N1G1 1221 aaKnown RBP15.87■□□□□ 0.13
USP3-204ENST00000540797 KCNH3Q9ULD8 1083 aa15.87■□□□□ 0.13
USP3-204ENST00000540797 KCNJ14Q9UNX9 436 aa15.87■□□□□ 0.13
USP3-204ENST00000540797 ADCY10Q96PN6 1610 aa15.87■□□□□ 0.13
USP3-204ENST00000540797 TAF12Q16514 161 aa15.87■□□□□ 0.13
USP3-204ENST00000540797 KIAA0753Q2KHM9 967 aa15.87■□□□□ 0.13
USP3-204ENST00000540797 SNX29Q8TEQ0 813 aa15.87■□□□□ 0.13
USP3-204ENST00000540797 CEP83Q9Y592 693 aa15.87■□□□□ 0.13
USP3-204ENST00000540797 KDM2BQ8NHM5 1336 aa15.87■□□□□ 0.13
USP3-204ENST00000540797 GOLGA6L10A0A0M3HER8 536 aa15.86■□□□□ 0.13
USP3-204ENST00000540797 EPB41P11171 864 aaKnown RBP15.86■□□□□ 0.13
USP3-204ENST00000540797 STRN3Q13033 797 aa15.86■□□□□ 0.13
USP3-204ENST00000540797 MSANTD4Q8NCY6 345 aa15.86■□□□□ 0.13
USP3-204ENST00000540797 CALCRLQ16602 461 aa15.86■□□□□ 0.13
USP3-204ENST00000540797 SPECC1Q5M775 1068 aa15.86■□□□□ 0.13
USP3-204ENST00000540797 GOLGA6L7A0A1B0GV03 622 aa15.86■□□□□ 0.13
USP3-204ENST00000540797 GCOM1H8Y6P7 765 aaPredicted RBP15.86■□□□□ 0.13
USP3-204ENST00000540797 MYZAPP0CAP1 466 aa15.86■□□□□ 0.13
USP3-204ENST00000540797 SKILP12757 684 aa15.86■□□□□ 0.13
USP3-204ENST00000540797 PRPHP41219 470 aa15.86■□□□□ 0.13
USP3-204ENST00000540797 VPS54Q9P1Q0 977 aa15.86■□□□□ 0.13
USP3-204ENST00000540797 COMMD10Q9Y6G5 202 aa15.86■□□□□ 0.13
USP3-204ENST00000540797 HSPD1P10809 573 aaKnown RBP15.86■□□□□ 0.13
USP3-204ENST00000540797 CNNM4Q6P4Q7 775 aa15.86■□□□□ 0.13
USP3-204ENST00000540797 CCDC42Q96M95 316 aa15.86■□□□□ 0.13
USP3-204ENST00000540797 GPR108Q9NPR9 543 aa15.86■□□□□ 0.13
USP3-204ENST00000540797 RNF123Q5XPI4 1314 aa15.86■□□□□ 0.13
USP3-204ENST00000540797 CDK12Q9NYV4 1490 aaPredicted RBP15.85■□□□□ 0.13
USP3-204ENST00000540797 ICA1Q05084 483 aa15.85■□□□□ 0.13
USP3-204ENST00000540797 GADL1Q6ZQY3 521 aa15.85■□□□□ 0.13
USP3-204ENST00000540797 CCDC186Q7Z3E2 898 aa15.85■□□□□ 0.13
USP3-204ENST00000540797 UIMC1Q96RL1 719 aa15.85■□□□□ 0.13
USP3-204ENST00000540797 SLC5A4Q9NY91 659 aa15.85■□□□□ 0.13
USP3-204ENST00000540797 SMCO2A6NFE2 343 aa15.85■□□□□ 0.13
USP3-204ENST00000540797 CUTAO60888 179 aa15.85■□□□□ 0.13
USP3-204ENST00000540797 PDCL2Q8N4E4 241 aa15.85■□□□□ 0.13
USP3-204ENST00000540797 TM6SF1Q9BZW5 370 aa15.85■□□□□ 0.13
USP3-204ENST00000540797 DBNDD1Q9H9R9 158 aa15.85■□□□□ 0.13
USP3-204ENST00000540797 EXOC7Q9UPT5 735 aa15.85■□□□□ 0.13
USP3-204ENST00000540797 EEF2P13639 858 aaKnown RBP15.85■□□□□ 0.13
USP3-204ENST00000540797 GJC1P36383 396 aa15.85■□□□□ 0.13
USP3-204ENST00000540797 PABPC4Q13310 644 aaKnown RBP eCLIP15.85■□□□□ 0.139e-6■■■■□ 24.7
USP3-204ENST00000540797 UBE3CQ15386 1083 aa15.85■□□□□ 0.13
USP3-204ENST00000540797 POTEB2H3BUK9 544 aa15.85■□□□□ 0.13
USP3-204ENST00000540797 MAEAQ7L5Y9 396 aa15.85■□□□□ 0.13
USP3-204ENST00000540797 DNM3Q9UQ16 869 aa15.85■□□□□ 0.13
USP3-204ENST00000540797 CDC42BPGQ6DT37 1551 aa15.85■□□□□ 0.13
USP3-204ENST00000540797 WDR44Q5JSH3 913 aa15.84■□□□□ 0.13
USP3-204ENST00000540797 LRRC47Q8N1G4 583 aaKnown RBP15.84■□□□□ 0.13
USP3-204ENST00000540797 FRMPD2Q68DX3 1309 aaPredicted RBP15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms