RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 ZMYM1Q5SVZ6 1142 aa18.98■□□□□ 0.63
RPAIN-206ENST00000539417 CCDC129Q6ZRS4 1044 aa18.98■□□□□ 0.63
RPAIN-206ENST00000539417 CENPQQ7L2Z9 268 aaPredicted RBP18.98■□□□□ 0.63
RPAIN-206ENST00000539417 AIDAQ96BJ3 306 aa18.98■□□□□ 0.63
RPAIN-206ENST00000539417 HOOK2Q96ED9 719 aa18.98■□□□□ 0.63
RPAIN-206ENST00000539417 BAZ2AQ9UIF9 1905 aaKnown RBP18.98■□□□□ 0.63
RPAIN-206ENST00000539417 CYP2D7A0A087X1C5 515 aa18.97■□□□□ 0.63
RPAIN-206ENST00000539417 MAP2K2P36507 400 aa18.97■□□□□ 0.63
RPAIN-206ENST00000539417 JAG1P78504 1218 aa18.97■□□□□ 0.63
RPAIN-206ENST00000539417 NOGQ13253 232 aa18.97■□□□□ 0.63
RPAIN-206ENST00000539417 CERS3Q8IU89 383 aa18.97■□□□□ 0.63
RPAIN-206ENST00000539417 OPTNQ96CV9 577 aa18.97■□□□□ 0.63
RPAIN-206ENST00000539417 CCDC136Q96JN2 1154 aa18.97■□□□□ 0.63
RPAIN-206ENST00000539417 FAM227BQ96M60 508 aa18.97■□□□□ 0.63
RPAIN-206ENST00000539417 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.97■□□□□ 0.632e-7■■□□□ 11.6
RPAIN-206ENST00000539417 PI4KBQ9UBF8 816 aa18.97■□□□□ 0.63
RPAIN-206ENST00000539417 SLC4A4Q9Y6R1 1079 aa18.97■□□□□ 0.63
RPAIN-206ENST00000539417 GPAA1O43292 621 aa18.97■□□□□ 0.63
RPAIN-206ENST00000539417 TBC1D12O60347 775 aa18.97■□□□□ 0.63
RPAIN-206ENST00000539417 CCDC84Q86UT8 332 aaPredicted RBP18.97■□□□□ 0.63
RPAIN-206ENST00000539417 METTL16Q86W50 562 aaKnown RBP18.97■□□□□ 0.63
RPAIN-206ENST00000539417 DHX36Q9H2U1 1008 aaKnown RBP18.97■□□□□ 0.63
RPAIN-206ENST00000539417 A0A0D9SFI3 127 aa18.96■□□□□ 0.63
RPAIN-206ENST00000539417 UNCXA6NJT0 531 aa18.96■□□□□ 0.63
RPAIN-206ENST00000539417 GSG1L2A8MUP6 293 aa18.96■□□□□ 0.63
RPAIN-206ENST00000539417 HSPA1AP0DMV8 641 aaKnown RBP18.96■□□□□ 0.63
RPAIN-206ENST00000539417 HSPA1BP0DMV9 641 aaKnown RBP18.96■□□□□ 0.63
RPAIN-206ENST00000539417 TTC22Q5TAA0 569 aa18.96■□□□□ 0.63
RPAIN-206ENST00000539417 OTUD5Q96G74 571 aa18.96■□□□□ 0.63
RPAIN-206ENST00000539417 EPB41L4AQ9HCS5 686 aaPredicted RBP18.96■□□□□ 0.63
RPAIN-206ENST00000539417 WBP1LQ9NX94 342 aa18.96■□□□□ 0.63
RPAIN-206ENST00000539417 MCM9Q9NXL9 1143 aa18.96■□□□□ 0.63
RPAIN-206ENST00000539417 CSADQ9Y600 493 aa18.96■□□□□ 0.63
RPAIN-206ENST00000539417 SPDYE5A6NIY4 337 aa18.94■□□□□ 0.62
RPAIN-206ENST00000539417 FOXP2O15409 715 aa18.94■□□□□ 0.62
RPAIN-206ENST00000539417 NMIQ13287 307 aaPredicted RBP18.94■□□□□ 0.62
RPAIN-206ENST00000539417 NOL9Q5SY16 702 aaKnown RBP18.94■□□□□ 0.62
RPAIN-206ENST00000539417 ATP8A2Q9NTI2 1148 aa18.94■□□□□ 0.62
RPAIN-206ENST00000539417 DOCK1Q14185 1865 aa18.93■□□□□ 0.62
RPAIN-206ENST00000539417 LAMB1P07942 1786 aa18.93■□□□□ 0.62
RPAIN-206ENST00000539417 POLR3DP05423 398 aaPredicted RBP18.93■□□□□ 0.62
RPAIN-206ENST00000539417 SDSP20132 328 aa18.93■□□□□ 0.62
RPAIN-206ENST00000539417 FOXP4Q8IVH2 680 aaPredicted RBP18.93■□□□□ 0.62
RPAIN-206ENST00000539417 SCYL3Q8IZE3 742 aa18.93■□□□□ 0.62
RPAIN-206ENST00000539417 TSKSQ9UJT2 592 aa18.93■□□□□ 0.62
RPAIN-206ENST00000539417 ATAD5Q96QE3 1844 aa18.93■□□□□ 0.62
RPAIN-206ENST00000539417 USP17L12C9JPN9 530 aa18.92■□□□□ 0.62
RPAIN-206ENST00000539417 USP17L21D6R901 530 aa18.92■□□□□ 0.62
RPAIN-206ENST00000539417 IRF6O14896 467 aa18.92■□□□□ 0.62
RPAIN-206ENST00000539417 FOXN1O15353 648 aa18.92■□□□□ 0.62
RPAIN-206ENST00000539417 HLA-DOAP06340 250 aa18.92■□□□□ 0.62
RPAIN-206ENST00000539417 ZBTB48P10074 688 aaPredicted RBP18.92■□□□□ 0.62
RPAIN-206ENST00000539417 GABPAQ06546 454 aa18.92■□□□□ 0.62
RPAIN-206ENST00000539417 VPS53Q5VIR6 699 aa18.92■□□□□ 0.62
RPAIN-206ENST00000539417 CTR9Q6PD62 1173 aa18.92■□□□□ 0.62
RPAIN-206ENST00000539417 ZNF589Q86UQ0 364 aaPredicted RBP18.92■□□□□ 0.62
RPAIN-206ENST00000539417 CRACR2BQ8N4Y2 399 aaPredicted RBP18.92■□□□□ 0.62
RPAIN-206ENST00000539417 SLC44A5Q8NCS7 719 aa18.92■□□□□ 0.62
RPAIN-206ENST00000539417 DYNLL2Q96FJ2 89 aa18.92■□□□□ 0.62
RPAIN-206ENST00000539417 MS4A4AQ96JQ5 239 aa18.92■□□□□ 0.62
RPAIN-206ENST00000539417 HERC5Q9UII4 1024 aaKnown RBP18.92■□□□□ 0.62
RPAIN-206ENST00000539417 PHIPQ8WWQ0 1821 aa18.92■□□□□ 0.62
RPAIN-206ENST00000539417 CTNND1O60716 968 aaKnown RBP18.91■□□□□ 0.62
RPAIN-206ENST00000539417 GDF11O95390 407 aa18.91■□□□□ 0.62
RPAIN-206ENST00000539417 PTPRAP18433 802 aa18.91■□□□□ 0.62
RPAIN-206ENST00000539417 SHMT1P34896 483 aa18.91■□□□□ 0.62
RPAIN-206ENST00000539417 LRRFIP1Q32MZ4 808 aaKnown RBP18.91■□□□□ 0.62
RPAIN-206ENST00000539417 TTC6Q86TZ1 520 aa18.91■□□□□ 0.62
RPAIN-206ENST00000539417 ERO1BQ86YB8 467 aa18.91■□□□□ 0.62
RPAIN-206ENST00000539417 PTPN18Q99952 460 aa18.91■□□□□ 0.62
RPAIN-206ENST00000539417 EHD4Q9H223 541 aa18.91■□□□□ 0.62
RPAIN-206ENST00000539417 IL25Q9H293 177 aa18.91■□□□□ 0.62
RPAIN-206ENST00000539417 SERPINB13Q9UIV8 391 aa18.91■□□□□ 0.62
RPAIN-206ENST00000539417 CAP2P40123 477 aa18.9■□□□□ 0.62
RPAIN-206ENST00000539417 MAP2K1Q02750 393 aaPredicted RBP18.9■□□□□ 0.62
RPAIN-206ENST00000539417 C12orf60Q5U649 245 aa18.9■□□□□ 0.62
RPAIN-206ENST00000539417 PATL2C9JE40 543 aaKnown RBP18.9■□□□□ 0.62
RPAIN-206ENST00000539417 IGF2BP3O00425 579 aaKnown RBP eCLIP18.9■□□□□ 0.62
RPAIN-206ENST00000539417 TM4SF4P48230 202 aa18.9■□□□□ 0.62
RPAIN-206ENST00000539417 TATDN1Q6P1N9 297 aa18.9■□□□□ 0.62
RPAIN-206ENST00000539417 HELLSQ9NRZ9 838 aa18.9■□□□□ 0.62
RPAIN-206ENST00000539417 PPATQ06203 517 aa18.89■□□□□ 0.61
RPAIN-206ENST00000539417 PPIL2Q13356 520 aa18.89■□□□□ 0.61
RPAIN-206ENST00000539417 MCMDC2Q4G0Z9 681 aa18.89■□□□□ 0.61
RPAIN-206ENST00000539417 IFNL3Q8IZI9 196 aa18.89■□□□□ 0.61
RPAIN-206ENST00000539417 STK11IPQ8N1F8 1099 aa18.89■□□□□ 0.61
RPAIN-206ENST00000539417 BRI3BPQ8WY22 251 aa18.89■□□□□ 0.61
RPAIN-206ENST00000539417 RNF186Q9NXI6 227 aa18.89■□□□□ 0.61
RPAIN-206ENST00000539417 PPP4R2Q9NY27 417 aa18.89■□□□□ 0.61
RPAIN-206ENST00000539417 ZHX2Q9Y6X8 837 aa18.89■□□□□ 0.61
RPAIN-206ENST00000539417 APPP05067 770 aa18.88■□□□□ 0.61
RPAIN-206ENST00000539417 CWC27Q6UX04 472 aaKnown RBP18.88■□□□□ 0.61
RPAIN-206ENST00000539417 TRIM34Q9BYJ4 488 aa18.88■□□□□ 0.61
RPAIN-206ENST00000539417 PICK1Q9NRD5 415 aa18.88■□□□□ 0.61
RPAIN-206ENST00000539417 AFG3L2Q9Y4W6 797 aa18.88■□□□□ 0.61
RPAIN-206ENST00000539417 MANSC4A6NHS7 340 aaPredicted RBP18.87■□□□□ 0.61
RPAIN-206ENST00000539417 TRPA1O75762 1119 aa18.87■□□□□ 0.61
RPAIN-206ENST00000539417 DGKZQ13574 1117 aa18.87■□□□□ 0.61
RPAIN-206ENST00000539417 MOGSQ13724 837 aa18.87■□□□□ 0.61
RPAIN-206ENST00000539417 R3HDMLQ9H3Y0 253 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 143.7 ms