RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 ZSCAN29Q8IWY8 852 aaPredicted RBP14.23□□□□□ -0.13
CLIP1-208ENST00000537004 SH3RF3Q8TEJ3 882 aaPredicted RBP14.23□□□□□ -0.13
CLIP1-208ENST00000537004 FSD1Q9BTV5 496 aa14.23□□□□□ -0.13
CLIP1-208ENST00000537004 AKAP11Q9UKA4 1901 aa14.23□□□□□ -0.13
CLIP1-208ENST00000537004 RFX7Q2KHR2 1363 aa14.23□□□□□ -0.13
CLIP1-208ENST00000537004 TBC1D8O95759 1140 aa14.22□□□□□ -0.13
CLIP1-208ENST00000537004 LDHCP07864 332 aa14.22□□□□□ -0.13
CLIP1-208ENST00000537004 SNCAIPQ9Y6H5 919 aa14.22□□□□□ -0.13
CLIP1-208ENST00000537004 TM4SF4P48230 202 aa14.22□□□□□ -0.13
CLIP1-208ENST00000537004 NMIQ13287 307 aaPredicted RBP14.22□□□□□ -0.13
CLIP1-208ENST00000537004 OTUD5Q96G74 571 aa14.22□□□□□ -0.13
CLIP1-208ENST00000537004 FAM227BQ96M60 508 aa14.22□□□□□ -0.13
CLIP1-208ENST00000537004 DNAJC2Q99543 621 aaKnown RBP14.22□□□□□ -0.13
CLIP1-208ENST00000537004 R3HDMLQ9H3Y0 253 aa14.22□□□□□ -0.13
CLIP1-208ENST00000537004 CSADQ9Y600 493 aa14.22□□□□□ -0.13
CLIP1-208ENST00000537004 RPAP1Q9BWH6 1393 aaPredicted RBP14.22□□□□□ -0.13
CLIP1-208ENST00000537004 ENTPD3O75355 529 aa14.21□□□□□ -0.13
CLIP1-208ENST00000537004 ZBTB48P10074 688 aaPredicted RBP14.21□□□□□ -0.13
CLIP1-208ENST00000537004 DYNLL1P63167 89 aaKnown RBP14.21□□□□□ -0.13
CLIP1-208ENST00000537004 TEX11Q8IYF3 940 aa14.21□□□□□ -0.13
CLIP1-208ENST00000537004 MAGEB6Q8N7X4 407 aa14.21□□□□□ -0.13
CLIP1-208ENST00000537004 MIGA1Q8NAN2 632 aa14.21□□□□□ -0.13
CLIP1-208ENST00000537004 BRCA2P51587 3418 aa14.21□□□□□ -0.13
CLIP1-208ENST00000537004 ATRNL1Q5VV63 1379 aa14.2□□□□□ -0.14
CLIP1-208ENST00000537004 UNCXA6NJT0 531 aa14.2□□□□□ -0.14
CLIP1-208ENST00000537004 FAM196BA6NMK8 535 aa14.2□□□□□ -0.14
CLIP1-208ENST00000537004 IGF2BP3O00425 579 aaKnown RBP eCLIP14.2□□□□□ -0.14
CLIP1-208ENST00000537004 GOLIM4O00461 696 aa14.2□□□□□ -0.14
CLIP1-208ENST00000537004 CYP7A1P22680 504 aa14.2□□□□□ -0.14
CLIP1-208ENST00000537004 DCAF15Q66K64 600 aa14.2□□□□□ -0.14
CLIP1-208ENST00000537004 HAUS7Q99871 368 aa14.2□□□□□ -0.14
CLIP1-208ENST00000537004 PTPN18Q99952 460 aa14.2□□□□□ -0.14
CLIP1-208ENST00000537004 ZNF341Q9BYN7 854 aa14.2□□□□□ -0.14
CLIP1-208ENST00000537004 A0A0D9SFI3 127 aa14.2□□□□□ -0.14
CLIP1-208ENST00000537004 MCM2P49736 904 aa14.2□□□□□ -0.14
CLIP1-208ENST00000537004 PTH1RQ03431 593 aa14.2□□□□□ -0.14
CLIP1-208ENST00000537004 SREBF2Q12772 1141 aa14.2□□□□□ -0.14
CLIP1-208ENST00000537004 SLFNL1Q499Z3 407 aa14.2□□□□□ -0.14
CLIP1-208ENST00000537004 SAGE1Q9NXZ1 904 aa14.2□□□□□ -0.14
CLIP1-208ENST00000537004 SNX14Q9Y5W7 946 aa14.2□□□□□ -0.14
CLIP1-208ENST00000537004 CCDC171Q6TFL3 1326 aa14.2□□□□□ -0.14
CLIP1-208ENST00000537004 CHGBP05060 677 aa14.19□□□□□ -0.14
CLIP1-208ENST00000537004 MAPKAPK5Q8IW41 473 aa14.19□□□□□ -0.14
CLIP1-208ENST00000537004 REM2Q8IYK8 340 aaPredicted RBP14.19□□□□□ -0.14
CLIP1-208ENST00000537004 TGFBRAP1Q8WUH2 860 aa14.19□□□□□ -0.14
CLIP1-208ENST00000537004 HOOK2Q96ED9 719 aa14.19□□□□□ -0.14
CLIP1-208ENST00000537004 MS4A4AQ96JQ5 239 aa14.19□□□□□ -0.14
CLIP1-208ENST00000537004 UPF3BQ9BZI7 483 aaKnown RBP14.19□□□□□ -0.14
CLIP1-208ENST00000537004 OTOFQ9HC10 1997 aa14.19□□□□□ -0.14
CLIP1-208ENST00000537004 MYO5AQ9Y4I1 1855 aaKnown RBP14.19□□□□□ -0.14
CLIP1-208ENST00000537004 MANSC4A6NHS7 340 aaPredicted RBP14.19□□□□□ -0.14
CLIP1-208ENST00000537004 PHF20L1A8MW92 1017 aa14.19□□□□□ -0.14
CLIP1-208ENST00000537004 IRF6O14896 467 aa14.19□□□□□ -0.14
CLIP1-208ENST00000537004 BAG3O95817 575 aa14.19□□□□□ -0.14
CLIP1-208ENST00000537004 RAB3GAP1Q15042 981 aa14.19□□□□□ -0.14
CLIP1-208ENST00000537004 SLC4A8Q2Y0W8 1093 aa14.19□□□□□ -0.14
CLIP1-208ENST00000537004 IFFO2Q5TF58 517 aa14.19□□□□□ -0.14
CLIP1-208ENST00000537004 IFNL1Q8IU54 200 aa14.19□□□□□ -0.14
CLIP1-208ENST00000537004 RASEFQ8IZ41 740 aa14.19□□□□□ -0.14
CLIP1-208ENST00000537004 IL27Q8NEV9 243 aa14.19□□□□□ -0.14
CLIP1-208ENST00000537004 NOL10Q9BSC4 688 aaKnown RBP14.19□□□□□ -0.14
CLIP1-208ENST00000537004 OSBPL5Q9H0X9 879 aaPredicted RBP14.19□□□□□ -0.14
CLIP1-208ENST00000537004 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.19□□□□□ -0.14
CLIP1-208ENST00000537004 ZNF112Q9UJU3 913 aa14.19□□□□□ -0.14
CLIP1-208ENST00000537004 CASP8AP2Q9UKL3 1982 aa14.18□□□□□ -0.14
CLIP1-208ENST00000537004 SPDYE5A6NIY4 337 aa14.18□□□□□ -0.14
CLIP1-208ENST00000537004 CAPN15O75808 1086 aa14.18□□□□□ -0.14
CLIP1-208ENST00000537004 PPP4CP60510 307 aa14.18□□□□□ -0.14
CLIP1-208ENST00000537004 MAP3K12Q12852 859 aa14.18□□□□□ -0.14
CLIP1-208ENST00000537004 BRI3BPQ8WY22 251 aa14.18□□□□□ -0.14
CLIP1-208ENST00000537004 MCM4P33991 863 aa14.17□□□□□ -0.14
CLIP1-208ENST00000537004 SLC9C2Q5TAH2 1124 aa14.17□□□□□ -0.14
CLIP1-208ENST00000537004 TNPO1Q92973 898 aaKnown RBP14.17□□□□□ -0.14
CLIP1-208ENST00000537004 TMX3Q96JJ7 454 aa14.17□□□□□ -0.14
CLIP1-208ENST00000537004 LAMA4Q16363 1823 aa14.17□□□□□ -0.14
CLIP1-208ENST00000537004 CCDC84Q86UT8 332 aaPredicted RBP14.17□□□□□ -0.14
CLIP1-208ENST00000537004 ERO1BQ86YB8 467 aa14.17□□□□□ -0.14
CLIP1-208ENST00000537004 MAP4K1Q92918 833 aa14.17□□□□□ -0.14
CLIP1-208ENST00000537004 PAG1Q9NWQ8 432 aa14.17□□□□□ -0.14
CLIP1-208ENST00000537004 SAP30BPQ9UHR5 308 aaKnown RBP14.17□□□□□ -0.14
CLIP1-208ENST00000537004 FLT1P17948 1338 aa14.17□□□□□ -0.14
CLIP1-208ENST00000537004 CCL15-CCL14A0A0B4J2E2 113 aa14.16□□□□□ -0.14
CLIP1-208ENST00000537004 NPM3O75607 178 aaKnown RBP14.16□□□□□ -0.14
CLIP1-208ENST00000537004 PDE6AP16499 860 aa14.16□□□□□ -0.14
CLIP1-208ENST00000537004 MAP3K10Q02779 954 aa14.16□□□□□ -0.14
CLIP1-208ENST00000537004 CCL15Q16663 113 aa14.16□□□□□ -0.14
CLIP1-208ENST00000537004 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.16□□□□□ -0.14
CLIP1-208ENST00000537004 ZNF296Q8WUU4 475 aaPredicted RBP14.16□□□□□ -0.14
CLIP1-208ENST00000537004 KCNB2Q92953 911 aa14.16□□□□□ -0.14
CLIP1-208ENST00000537004 CWC22Q9HCG8 908 aaKnown RBP14.16□□□□□ -0.14
CLIP1-208ENST00000537004 RBM8AQ9Y5S9 174 aaKnown RBP14.16□□□□□ -0.14
CLIP1-208ENST00000537004 INHBEP58166 350 aa14.15□□□□□ -0.14
CLIP1-208ENST00000537004 NECTIN1Q15223 517 aa14.15□□□□□ -0.14
CLIP1-208ENST00000537004 TTF1Q15361 905 aaPredicted RBP14.15□□□□□ -0.14
CLIP1-208ENST00000537004 FAM43AQ8N2R8 423 aa14.15□□□□□ -0.14
CLIP1-208ENST00000537004 KBTBD3Q8NAB2 608 aa14.15□□□□□ -0.14
CLIP1-208ENST00000537004 MKI67P46013 3256 aaKnown RBP14.15□□□□□ -0.14
CLIP1-208ENST00000537004 PLCG2P16885 1265 aa14.15□□□□□ -0.14
CLIP1-208ENST00000537004 RRP1BQ14684 758 aaKnown RBP14.15□□□□□ -0.14
CLIP1-208ENST00000537004 NOL8Q76FK4 1167 aaKnown RBP14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms