RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 HSPA8P11142 646 aaKnown RBP18.14■□□□□ 0.49
CPSF1-208ENST00000532560 INHBEP58166 350 aa18.14■□□□□ 0.49
CPSF1-208ENST00000532560 LRRFIP1Q32MZ4 808 aaKnown RBP18.14■□□□□ 0.49
CPSF1-208ENST00000532560 CNKSR2Q8WXI2 1034 aa18.14■□□□□ 0.49
CPSF1-208ENST00000532560 OTUD5Q96G74 571 aa18.14■□□□□ 0.49
CPSF1-208ENST00000532560 ARMT1Q9H993 441 aa18.14■□□□□ 0.49
CPSF1-208ENST00000532560 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.14■□□□□ 0.49
CPSF1-208ENST00000532560 PALD1Q9ULE6 856 aa18.14■□□□□ 0.49
CPSF1-208ENST00000532560 FAM196BA6NMK8 535 aa18.13■□□□□ 0.49
CPSF1-208ENST00000532560 RNF113AO15541 343 aaKnown RBP18.13■□□□□ 0.49
CPSF1-208ENST00000532560 CTNND1O60716 968 aaKnown RBP18.13■□□□□ 0.49
CPSF1-208ENST00000532560 SLURP2P0DP57 97 aa18.13■□□□□ 0.49
CPSF1-208ENST00000532560 PPATQ06203 517 aa18.13■□□□□ 0.49
CPSF1-208ENST00000532560 PPIL2Q13356 520 aa18.13■□□□□ 0.49
CPSF1-208ENST00000532560 SCYL3Q8IZE3 742 aa18.13■□□□□ 0.49
CPSF1-208ENST00000532560 APPBP2Q92624 585 aa18.13■□□□□ 0.49
CPSF1-208ENST00000532560 RNF186Q9NXI6 227 aa18.13■□□□□ 0.49
CPSF1-208ENST00000532560 SAP30BPQ9UHR5 308 aaKnown RBP18.13■□□□□ 0.49
CPSF1-208ENST00000532560 TESPA1A2RU30 521 aaPredicted RBP18.12■□□□□ 0.49
CPSF1-208ENST00000532560 GTF2A2P52657 109 aa18.12■□□□□ 0.49
CPSF1-208ENST00000532560 FOXP4Q8IVH2 680 aaPredicted RBP18.12■□□□□ 0.49
CPSF1-208ENST00000532560 PLEKHM2Q8IWE5 1019 aa18.12■□□□□ 0.49
CPSF1-208ENST00000532560 MS4A4AQ96JQ5 239 aa18.12■□□□□ 0.49
CPSF1-208ENST00000532560 FSD1Q9BTV5 496 aa18.12■□□□□ 0.49
CPSF1-208ENST00000532560 PUS7LQ9H0K6 701 aaKnown RBP18.12■□□□□ 0.49
CPSF1-208ENST00000532560 EHD4Q9H223 541 aa18.12■□□□□ 0.49
CPSF1-208ENST00000532560 OSBPL3Q9H4L5 887 aa18.12■□□□□ 0.49
CPSF1-208ENST00000532560 DNAJC18Q9H819 358 aa18.12■□□□□ 0.49
CPSF1-208ENST00000532560 DCP1AQ9NPI6 582 aaPredicted RBP18.12■□□□□ 0.49
CPSF1-208ENST00000532560 NEFLP07196 543 aa18.11■□□□□ 0.49
CPSF1-208ENST00000532560 IFNL1Q8IU54 200 aa18.11■□□□□ 0.49
CPSF1-208ENST00000532560 CRACR2BQ8N4Y2 399 aaPredicted RBP18.11■□□□□ 0.49
CPSF1-208ENST00000532560 SDR42E1Q8WUS8 393 aa18.11■□□□□ 0.49
CPSF1-208ENST00000532560 EVI5LQ96CN4 794 aa18.11■□□□□ 0.49
CPSF1-208ENST00000532560 PRDM10Q9NQV6 1147 aa18.11■□□□□ 0.49
CPSF1-208ENST00000532560 PICK1Q9NRD5 415 aa18.11■□□□□ 0.49
CPSF1-208ENST00000532560 ATAD5Q96QE3 1844 aa18.1■□□□□ 0.49
CPSF1-208ENST00000532560 IRF6O14896 467 aa18.1■□□□□ 0.49
CPSF1-208ENST00000532560 ALDH1A1P00352 501 aa18.1■□□□□ 0.49
CPSF1-208ENST00000532560 LBX1P52954 281 aa18.1■□□□□ 0.49
CPSF1-208ENST00000532560 TTC6Q86TZ1 520 aa18.1■□□□□ 0.49
CPSF1-208ENST00000532560 TICAM2Q86XR7 235 aa18.1■□□□□ 0.49
CPSF1-208ENST00000532560 OSBP2Q969R2 916 aa18.1■□□□□ 0.49
CPSF1-208ENST00000532560 TRIM34Q9BYJ4 488 aa18.1■□□□□ 0.49
CPSF1-208ENST00000532560 ATP8A2Q9NTI2 1148 aa18.1■□□□□ 0.49
CPSF1-208ENST00000532560 KCNH4Q9UQ05 1017 aa18.1■□□□□ 0.49
CPSF1-208ENST00000532560 PRKAB2O43741 272 aa18.09■□□□□ 0.49
CPSF1-208ENST00000532560 TRPA1O75762 1119 aa18.09■□□□□ 0.49
CPSF1-208ENST00000532560 PTPRAP18433 802 aa18.09■□□□□ 0.49
CPSF1-208ENST00000532560 SNAPC2Q13487 334 aa18.09■□□□□ 0.49
CPSF1-208ENST00000532560 SLC4A8Q2Y0W8 1093 aa18.09■□□□□ 0.49
CPSF1-208ENST00000532560 CFHR5Q9BXR6 569 aa18.09■□□□□ 0.49
CPSF1-208ENST00000532560 SERPINB13Q9UIV8 391 aa18.09■□□□□ 0.49
CPSF1-208ENST00000532560 TSKSQ9UJT2 592 aa18.09■□□□□ 0.49
CPSF1-208ENST00000532560 PHIPQ8WWQ0 1821 aa18.08■□□□□ 0.48
CPSF1-208ENST00000532560 CCL15-CCL14A0A0B4J2E2 113 aa18.08■□□□□ 0.48
CPSF1-208ENST00000532560 IGF2BP3O00425 579 aaKnown RBP eCLIP18.08■□□□□ 0.48
CPSF1-208ENST00000532560 POLR3DP05423 398 aaPredicted RBP18.08■□□□□ 0.48
CPSF1-208ENST00000532560 CETPP11597 493 aa18.08■□□□□ 0.48
CPSF1-208ENST00000532560 CAP2P40123 477 aa18.08■□□□□ 0.48
CPSF1-208ENST00000532560 RRP1BQ14684 758 aaKnown RBP18.08■□□□□ 0.48
CPSF1-208ENST00000532560 CCL15Q16663 113 aa18.08■□□□□ 0.48
CPSF1-208ENST00000532560 ZMYM1Q5SVZ6 1142 aa18.08■□□□□ 0.48
CPSF1-208ENST00000532560 BRI3BPQ8WY22 251 aa18.08■□□□□ 0.48
CPSF1-208ENST00000532560 STRBPQ96SI9 672 aaKnown RBP18.08■□□□□ 0.48
CPSF1-208ENST00000532560 MCM9Q9NXL9 1143 aa18.08■□□□□ 0.48
CPSF1-208ENST00000532560 TAOK2Q9UL54 1235 aa18.08■□□□□ 0.48
CPSF1-208ENST00000532560 SLC4A4Q9Y6R1 1079 aa18.08■□□□□ 0.48
CPSF1-208ENST00000532560 M0R2C6 588 aa18.07■□□□□ 0.48
CPSF1-208ENST00000532560 GPAA1O43292 621 aa18.07■□□□□ 0.48
CPSF1-208ENST00000532560 PLCD1P51178 756 aa18.07■□□□□ 0.48
CPSF1-208ENST00000532560 OTUD7BQ6GQQ9 843 aa18.07■□□□□ 0.48
CPSF1-208ENST00000532560 DDRGK1Q96HY6 314 aa18.07■□□□□ 0.48
CPSF1-208ENST00000532560 PTPN18Q99952 460 aa18.07■□□□□ 0.48
CPSF1-208ENST00000532560 TBC1D2Q9BYX2 928 aa18.07■□□□□ 0.48
CPSF1-208ENST00000532560 GINM1Q9NU53 330 aa18.07■□□□□ 0.48
CPSF1-208ENST00000532560 ZHX2Q9Y6X8 837 aa18.07■□□□□ 0.48
CPSF1-208ENST00000532560 BAZ2AQ9UIF9 1905 aaKnown RBP18.07■□□□□ 0.48
CPSF1-208ENST00000532560 CXCL11O14625 94 aa18.06■□□□□ 0.48
CPSF1-208ENST00000532560 GNAT2P19087 354 aa18.06■□□□□ 0.48
CPSF1-208ENST00000532560 PDE4AP27815 886 aa18.06■□□□□ 0.48
CPSF1-208ENST00000532560 GABPAQ06546 454 aa18.06■□□□□ 0.48
CPSF1-208ENST00000532560 GIMAP6Q6P9H5 292 aa18.06■□□□□ 0.48
CPSF1-208ENST00000532560 AFG3L2Q9Y4W6 797 aa18.06■□□□□ 0.48
CPSF1-208ENST00000532560 PTPRFP10586 1907 aa18.06■□□□□ 0.48
CPSF1-208ENST00000532560 ASNSP08243 561 aa18.05■□□□□ 0.48
CPSF1-208ENST00000532560 NOM1Q5C9Z4 860 aaKnown RBP18.05■□□□□ 0.48
CPSF1-208ENST00000532560 TATDN1Q6P1N9 297 aa18.05■□□□□ 0.48
CPSF1-208ENST00000532560 ZCCHC17Q9NP64 241 aaKnown RBP18.05■□□□□ 0.48
CPSF1-208ENST00000532560 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.05■□□□□ 0.48
CPSF1-208ENST00000532560 A0A0G2JLL6 359 aaPredicted RBP18.04■□□□□ 0.48
CPSF1-208ENST00000532560 GSG1L2A8MUP6 293 aa18.04■□□□□ 0.48
CPSF1-208ENST00000532560 TRIM6-TRIM34B2RNG4 842 aa18.04■□□□□ 0.48
CPSF1-208ENST00000532560 SHMT1P34896 483 aa18.04■□□□□ 0.48
CPSF1-208ENST00000532560 COL13A1Q5TAT6 717 aaPredicted RBP18.04■□□□□ 0.48
CPSF1-208ENST00000532560 PRRT2Q7Z6L0 340 aaPredicted RBP18.04■□□□□ 0.48
CPSF1-208ENST00000532560 AMOTL1Q8IY63 956 aa18.04■□□□□ 0.48
CPSF1-208ENST00000532560 SEC62Q99442 399 aaKnown RBP18.04■□□□□ 0.48
CPSF1-208ENST00000532560 ARPP21Q9UBL0 812 aaPredicted RBP18.04■□□□□ 0.48
CPSF1-208ENST00000532560 ZBTB21Q9ULJ3 1066 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms