RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 SLC5A6Q9Y289 635 aa6.87□□□□□ -1.31
CD44-235ENST00000532339 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.86□□□□□ -1.31
CD44-235ENST00000532339 CELA3AP09093 270 aa6.86□□□□□ -1.31
CD44-235ENST00000532339 GNA15P30679 374 aa6.86□□□□□ -1.31
CD44-235ENST00000532339 PCNX4Q63HM2 1172 aa6.86□□□□□ -1.31
CD44-235ENST00000532339 ARHGAP27Q6ZUM4 889 aa6.86□□□□□ -1.31
CD44-235ENST00000532339 SV2BQ7L1I2 683 aa6.86□□□□□ -1.31
CD44-235ENST00000532339 NETO1Q8TDF5 533 aa6.86□□□□□ -1.31
CD44-235ENST00000532339 MISP3Q96FF7 219 aa6.86□□□□□ -1.31
CD44-235ENST00000532339 DUSP23Q9BVJ7 150 aa6.86□□□□□ -1.31
CD44-235ENST00000532339 MKNK2Q9HBH9 465 aa6.86□□□□□ -1.31
CD44-235ENST00000532339 PAK6Q9NQU5 681 aaPredicted RBP6.86□□□□□ -1.31
CD44-235ENST00000532339 PCDHA4Q9UN74 947 aa6.86□□□□□ -1.31
CD44-235ENST00000532339 TTF2Q9UNY4 1162 aaKnown RBP6.86□□□□□ -1.31
CD44-235ENST00000532339 SYNJ1O43426 1573 aa6.86□□□□□ -1.31
CD44-235ENST00000532339 DCDC2CA8MYV0 355 aa6.85□□□□□ -1.31
CD44-235ENST00000532339 FANCGO15287 622 aa6.85□□□□□ -1.31
CD44-235ENST00000532339 PRPF40AO75400 957 aaKnown RBP6.85□□□□□ -1.31
CD44-235ENST00000532339 LEFTY1O75610 366 aa6.85□□□□□ -1.31
CD44-235ENST00000532339 EIF4BP23588 611 aaKnown RBP6.85□□□□□ -1.31
CD44-235ENST00000532339 PPM1JQ5JR12 505 aa6.85□□□□□ -1.31
CD44-235ENST00000532339 SND1Q7KZF4 910 aaKnown RBP eCLIP6.85□□□□□ -1.31
CD44-235ENST00000532339 TOP6BLQ8N6T0 577 aa6.85□□□□□ -1.31
CD44-235ENST00000532339 BCL7CQ8WUZ0 217 aaPredicted RBP6.85□□□□□ -1.31
CD44-235ENST00000532339 CSADQ9Y600 493 aa6.85□□□□□ -1.31
CD44-235ENST00000532339 ABCC10Q5T3U5 1492 aa6.85□□□□□ -1.31
CD44-235ENST00000532339 KRTAP9-6A0A140TA67 174 aa6.84□□□□□ -1.31
CD44-235ENST00000532339 TXKP42681 527 aa6.84□□□□□ -1.31
CD44-235ENST00000532339 RING1Q06587 406 aa6.84□□□□□ -1.31
CD44-235ENST00000532339 RASIP1Q5U651 963 aa6.84□□□□□ -1.31
CD44-235ENST00000532339 CBLL1Q75N03 491 aa6.84□□□□□ -1.31
CD44-235ENST00000532339 CDC37L1Q7L3B6 337 aa6.84□□□□□ -1.31
CD44-235ENST00000532339 C12orf40Q86WS4 652 aa6.84□□□□□ -1.31
CD44-235ENST00000532339 PLD6Q8N2A8 252 aaKnown RBP6.84□□□□□ -1.31
CD44-235ENST00000532339 FAM181AQ8N9Y4 354 aa6.84□□□□□ -1.31
CD44-235ENST00000532339 ELMO3Q96BJ8 720 aa6.84□□□□□ -1.31
CD44-235ENST00000532339 FMNL2Q96PY5 1086 aa6.84□□□□□ -1.31
CD44-235ENST00000532339 AQRO60306 1485 aaKnown RBP eCLIP6.84□□□□□ -1.31
CD44-235ENST00000532339 CFTRP13569 1480 aa6.84□□□□□ -1.31
CD44-235ENST00000532339 ANKRD33BA6NCL7 494 aa6.83□□□□□ -1.32
CD44-235ENST00000532339 PDIA4P13667 645 aaKnown RBP6.83□□□□□ -1.32
CD44-235ENST00000532339 NTF4P34130 210 aa6.83□□□□□ -1.32
CD44-235ENST00000532339 IFI16Q16666 785 aaKnown RBP6.83□□□□□ -1.32
CD44-235ENST00000532339 EAPPQ56P03 285 aaPredicted RBP6.83□□□□□ -1.32
CD44-235ENST00000532339 ZBTB37Q5TC79 503 aa6.83□□□□□ -1.32
CD44-235ENST00000532339 AEBP1Q8IUX7 1158 aa6.83□□□□□ -1.32
CD44-235ENST00000532339 KCT2Q8NC54 265 aa6.83□□□□□ -1.32
CD44-235ENST00000532339 RNF114Q9Y508 228 aa6.83□□□□□ -1.32
CD44-235ENST00000532339 CEACAM5P06731 702 aa6.82□□□□□ -1.32
CD44-235ENST00000532339 GTF2IRD1Q9UHL9 959 aa6.82□□□□□ -1.32
CD44-235ENST00000532339 VAV3Q9UKW4 847 aa6.82□□□□□ -1.32
CD44-235ENST00000532339 AK5Q9Y6K8 562 aa6.82□□□□□ -1.32
CD44-235ENST00000532339 OXCT1P55809 520 aa6.81□□□□□ -1.32
CD44-235ENST00000532339 PRKCQQ04759 706 aa6.81□□□□□ -1.32
CD44-235ENST00000532339 PLCL1Q15111 1095 aa6.81□□□□□ -1.32
CD44-235ENST00000532339 CCDC85BQ15834 202 aaPredicted RBP6.81□□□□□ -1.32
CD44-235ENST00000532339 TTBK2Q6IQ55 1244 aa6.81□□□□□ -1.32
CD44-235ENST00000532339 ZNF574Q6ZN55 896 aaPredicted RBP6.81□□□□□ -1.32
CD44-235ENST00000532339 HDXQ7Z353 690 aa6.81□□□□□ -1.32
CD44-235ENST00000532339 SPRED2Q7Z698 418 aa6.81□□□□□ -1.32
CD44-235ENST00000532339 ZNF507Q8TCN5 953 aa6.81□□□□□ -1.32
CD44-235ENST00000532339 DUSP9Q99956 384 aaKnown RBP6.81□□□□□ -1.32
CD44-235ENST00000532339 KRTAP4-12Q9BQ66 201 aa6.81□□□□□ -1.32
CD44-235ENST00000532339 PRDM10Q9NQV6 1147 aa6.81□□□□□ -1.32
CD44-235ENST00000532339 TMEM265A0A087WTH1 108 aa6.8□□□□□ -1.32
CD44-235ENST00000532339 LMNB1P20700 586 aa6.8□□□□□ -1.32
CD44-235ENST00000532339 RPS26P62854 115 aaKnown RBP6.8□□□□□ -1.32
CD44-235ENST00000532339 BNIP3Q12983 259 aa6.8□□□□□ -1.32
CD44-235ENST00000532339 HRASLS5Q96KN8 279 aa6.8□□□□□ -1.32
CD44-235ENST00000532339 GOLGA2P5Q9HBQ8 144 aa6.8□□□□□ -1.32
CD44-235ENST00000532339 SNCAIPQ9Y6H5 919 aa6.8□□□□□ -1.32
CD44-235ENST00000532339 U3KQE9 123 aa6.8□□□□□ -1.32
CD44-235ENST00000532339 PRAMEF27A3QJZ7 478 aa6.79□□□□□ -1.32
CD44-235ENST00000532339 IGF2BP3O00425 579 aaKnown RBP eCLIP6.79□□□□□ -1.32
CD44-235ENST00000532339 JUNBP17275 347 aaPredicted RBP6.79□□□□□ -1.32
CD44-235ENST00000532339 ITIH2P19823 946 aa6.79□□□□□ -1.32
CD44-235ENST00000532339 INPP5AQ14642 412 aa6.79□□□□□ -1.32
CD44-235ENST00000532339 LRFN4Q6PJG9 635 aa6.79□□□□□ -1.32
CD44-235ENST00000532339 CYFIP1Q7L576 1253 aa6.79□□□□□ -1.32
CD44-235ENST00000532339 UBE3DQ7Z6J8 389 aa6.79□□□□□ -1.32
CD44-235ENST00000532339 WFDC3Q8IUB2 231 aa6.79□□□□□ -1.32
CD44-235ENST00000532339 GAL3ST3Q96A11 431 aa6.79□□□□□ -1.32
CD44-235ENST00000532339 ASIC4Q96FT7 647 aa6.79□□□□□ -1.32
CD44-235ENST00000532339 HEXIM2Q96MH2 286 aaKnown RBP6.79□□□□□ -1.32
CD44-235ENST00000532339 SNX11Q9Y5W9 270 aa6.79□□□□□ -1.32
CD44-235ENST00000532339 LRIG2O94898 1065 aa6.78□□□□□ -1.32
CD44-235ENST00000532339 CD8BP10966 210 aa6.78□□□□□ -1.32
CD44-235ENST00000532339 ITGB5P18084 799 aa6.78□□□□□ -1.32
CD44-235ENST00000532339 FUT4P22083 530 aa6.78□□□□□ -1.32
CD44-235ENST00000532339 PTPN11Q06124 597 aaPredicted RBP6.78□□□□□ -1.32
CD44-235ENST00000532339 AOC3Q16853 763 aa6.78□□□□□ -1.32
CD44-235ENST00000532339 ZNF792Q3KQV3 632 aa6.78□□□□□ -1.32
CD44-235ENST00000532339 ARMCX6Q7L4S7 300 aa6.78□□□□□ -1.32
CD44-235ENST00000532339 FAM214BQ7L5A3 538 aa6.78□□□□□ -1.32
CD44-235ENST00000532339 PLPPR2Q96GM1 343 aa6.78□□□□□ -1.32
CD44-235ENST00000532339 TNKS2Q9H2K2 1166 aa6.78□□□□□ -1.32
CD44-235ENST00000532339 PLAGL2Q9UPG8 496 aa6.78□□□□□ -1.32
CD44-235ENST00000532339 DIP2BQ9P265 1576 aa6.78□□□□□ -1.32
CD44-235ENST00000532339 WIPI1Q5MNZ9 446 aaPredicted RBP6.77□□□□□ -1.33
CD44-235ENST00000532339 WNT10AQ9GZT5 417 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms