RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 CRACR2BQ8N4Y2 399 aaPredicted RBP18.02■□□□□ 0.48
VPS28-215ENST00000531924 TBC1D2Q9BYX2 928 aa18.02■□□□□ 0.48
VPS28-215ENST00000531924 CCDC8Q9H0W5 538 aaPredicted RBP18.02■□□□□ 0.48
VPS28-215ENST00000531924 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.02■□□□□ 0.48
VPS28-215ENST00000531924 NOP58Q9Y2X3 529 aaKnown RBP18.02■□□□□ 0.48
VPS28-215ENST00000531924 IGSF3O75054 1194 aa18.01■□□□□ 0.47
VPS28-215ENST00000531924 CYP2E1P05181 493 aaPredicted RBP18.01■□□□□ 0.47
VPS28-215ENST00000531924 MS4A1P11836 297 aa18.01■□□□□ 0.47
VPS28-215ENST00000531924 RLBP1P12271 317 aa18.01■□□□□ 0.47
VPS28-215ENST00000531924 CTGFP29279 349 aa18.01■□□□□ 0.47
VPS28-215ENST00000531924 ZAP70P43403 619 aa18.01■□□□□ 0.47
VPS28-215ENST00000531924 UBXN2AP68543 259 aa18.01■□□□□ 0.47
VPS28-215ENST00000531924 SPP2Q13103 211 aa18.01■□□□□ 0.47
VPS28-215ENST00000531924 PABPC4Q13310 644 aaKnown RBP eCLIP18.01■□□□□ 0.47
VPS28-215ENST00000531924 ERC1Q8IUD2 1116 aa18.01■□□□□ 0.47
VPS28-215ENST00000531924 ZNF280CQ8ND82 737 aa18.01■□□□□ 0.47
VPS28-215ENST00000531924 TGFBRAP1Q8WUH2 860 aa18.01■□□□□ 0.47
VPS28-215ENST00000531924 ZNF512BQ96KM6 892 aaPredicted RBP18.01■□□□□ 0.47
VPS28-215ENST00000531924 AS3MTQ9HBK9 375 aa18.01■□□□□ 0.47
VPS28-215ENST00000531924 AGTPBP1Q9UPW5 1226 aa18.01■□□□□ 0.47
VPS28-215ENST00000531924 CENPFP49454 3210 aa18.01■□□□□ 0.47
VPS28-215ENST00000531924 COL2A1P02458 1487 aaPredicted RBP18.01■□□□□ 0.47
VPS28-215ENST00000531924 ZBED9Q6R2W3 1325 aa18■□□□□ 0.47
VPS28-215ENST00000531924 USP17L5A8MUK1 530 aa18■□□□□ 0.47
VPS28-215ENST00000531924 TNPO2O14787 897 aaKnown RBP18■□□□□ 0.47
VPS28-215ENST00000531924 CAP2P40123 477 aa18■□□□□ 0.47
VPS28-215ENST00000531924 PPP4CP60510 307 aa18■□□□□ 0.47
VPS28-215ENST00000531924 PRKCZQ05513 592 aa18■□□□□ 0.47
VPS28-215ENST00000531924 MAPKAPK5Q8IW41 473 aa18■□□□□ 0.47
VPS28-215ENST00000531924 PROCA1Q8NCQ7 364 aaPredicted RBP18■□□□□ 0.47
VPS28-215ENST00000531924 DBNLQ9UJU6 430 aaKnown RBP18■□□□□ 0.47
VPS28-215ENST00000531924 IDH1O75874 414 aaKnown RBP17.99■□□□□ 0.47
VPS28-215ENST00000531924 CYP7A1P22680 504 aa17.99■□□□□ 0.47
VPS28-215ENST00000531924 HSP90AB4PQ58FF6 505 aa17.99■□□□□ 0.47
VPS28-215ENST00000531924 SLAIN1Q8ND83 568 aa17.99■□□□□ 0.47
VPS28-215ENST00000531924 NKX2-3Q8TAU0 364 aa17.99■□□□□ 0.47
VPS28-215ENST00000531924 PANK1Q8TE04 598 aa17.99■□□□□ 0.47
VPS28-215ENST00000531924 KIAA0100Q14667 2235 aaKnown RBP17.98■□□□□ 0.47
VPS28-215ENST00000531924 HLA-DOAP06340 250 aa17.98■□□□□ 0.47
VPS28-215ENST00000531924 HMGCS2P54868 508 aa17.98■□□□□ 0.47
VPS28-215ENST00000531924 CEP85Q6P2H3 762 aa17.98■□□□□ 0.47
VPS28-215ENST00000531924 FOXP4Q8IVH2 680 aaPredicted RBP17.98■□□□□ 0.47
VPS28-215ENST00000531924 ANKRD13CQ8N6S4 541 aa17.98■□□□□ 0.47
VPS28-215ENST00000531924 COA7Q96BR5 231 aa17.98■□□□□ 0.47
VPS28-215ENST00000531924 EAF2Q96CJ1 260 aaPredicted RBP17.98■□□□□ 0.47
VPS28-215ENST00000531924 PIH1D3Q9NQM4 214 aaKnown RBP17.98■□□□□ 0.47
VPS28-215ENST00000531924 TLR7Q9NYK1 1049 aaKnown RBP17.98■□□□□ 0.47
VPS28-215ENST00000531924 TAOK2Q9UL54 1235 aa17.98■□□□□ 0.47
VPS28-215ENST00000531924 FLT1P17948 1338 aa17.98■□□□□ 0.47
VPS28-215ENST00000531924 ASNSP08243 561 aa17.97■□□□□ 0.47
VPS28-215ENST00000531924 MTFR1Q15390 333 aa17.97■□□□□ 0.47
VPS28-215ENST00000531924 TREML2Q5T2D2 321 aa17.97■□□□□ 0.47
VPS28-215ENST00000531924 AACSQ86V21 672 aa17.97■□□□□ 0.47
VPS28-215ENST00000531924 CERS3Q8IU89 383 aa17.97■□□□□ 0.47
VPS28-215ENST00000531924 RNF208Q9H0X6 261 aa17.97■□□□□ 0.47
VPS28-215ENST00000531924 TMOD4Q9NZQ9 345 aa17.97■□□□□ 0.47
VPS28-215ENST00000531924 SAP30BPQ9UHR5 308 aaKnown RBP17.97■□□□□ 0.47
VPS28-215ENST00000531924 EXOC6BQ9Y2D4 811 aa17.97■□□□□ 0.47
VPS28-215ENST00000531924 ADCY3O60266 1144 aa17.96■□□□□ 0.47
VPS28-215ENST00000531924 CCL5P13501 91 aa17.96■□□□□ 0.47
VPS28-215ENST00000531924 USP5P45974 858 aa17.96■□□□□ 0.47
VPS28-215ENST00000531924 GCLCP48506 637 aaPredicted RBP17.96■□□□□ 0.47
VPS28-215ENST00000531924 FLT3LGP49771 235 aa17.96■□□□□ 0.47
VPS28-215ENST00000531924 MAP3K12Q12852 859 aa17.96■□□□□ 0.47
VPS28-215ENST00000531924 ADGRA1Q86SQ6 560 aa17.96■□□□□ 0.47
VPS28-215ENST00000531924 BCL11AQ9H165 835 aa17.96■□□□□ 0.47
VPS28-215ENST00000531924 PALD1Q9ULE6 856 aa17.96■□□□□ 0.47
VPS28-215ENST00000531924 GABRQQ9UN88 632 aa17.96■□□□□ 0.47
VPS28-215ENST00000531924 DOCK1Q14185 1865 aa17.96■□□□□ 0.47
VPS28-215ENST00000531924 RBBP6Q7Z6E9 1792 aaKnown RBP17.96■□□□□ 0.47
VPS28-215ENST00000531924 ZSWIM8A7E2V4 1837 aa17.95■□□□□ 0.46
VPS28-215ENST00000531924 MAGEB6Q8N7X4 407 aa17.95■□□□□ 0.46
VPS28-215ENST00000531924 MIGA1Q8NAN2 632 aa17.95■□□□□ 0.46
VPS28-215ENST00000531924 APBB1O00213 710 aa17.94■□□□□ 0.46
VPS28-215ENST00000531924 HMMRO75330 724 aa17.94■□□□□ 0.46
VPS28-215ENST00000531924 GJB1P08034 283 aa17.94■□□□□ 0.46
VPS28-215ENST00000531924 DYNLL1P63167 89 aaKnown RBP17.94■□□□□ 0.46
VPS28-215ENST00000531924 IRX3P78415 501 aaPredicted RBP17.94■□□□□ 0.46
VPS28-215ENST00000531924 MTMR2Q13614 643 aa17.94■□□□□ 0.46
VPS28-215ENST00000531924 RRP1BQ14684 758 aaKnown RBP17.94■□□□□ 0.46
VPS28-215ENST00000531924 FAM110CQ1W6H9 321 aa17.94■□□□□ 0.46
VPS28-215ENST00000531924 WDR18Q9BV38 432 aa17.94■□□□□ 0.46
VPS28-215ENST00000531924 GINM1Q9NU53 330 aa17.94■□□□□ 0.46
VPS28-215ENST00000531924 GDF11O95390 407 aa17.93■□□□□ 0.46
VPS28-215ENST00000531924 ELNP15502 786 aa17.93■□□□□ 0.46
VPS28-215ENST00000531924 BACE1P56817 501 aa17.93■□□□□ 0.46
VPS28-215ENST00000531924 TMED8Q6PL24 325 aaPredicted RBP17.93■□□□□ 0.46
VPS28-215ENST00000531924 DPF3Q92784 378 aa17.93■□□□□ 0.46
VPS28-215ENST00000531924 ASCC2Q9H1I8 757 aaPredicted RBP17.93■□□□□ 0.46
VPS28-215ENST00000531924 CHMP4BQ9H444 224 aaKnown RBP17.93■□□□□ 0.46
VPS28-215ENST00000531924 IL1RAPL2Q9NP60 686 aa17.93■□□□□ 0.46
VPS28-215ENST00000531924 MKI67P46013 3256 aaKnown RBP17.92■□□□□ 0.46
VPS28-215ENST00000531924 C19orf81C9J6K1 198 aa17.92■□□□□ 0.46
VPS28-215ENST00000531924 IFIT2P09913 472 aaKnown RBP17.92■□□□□ 0.46
VPS28-215ENST00000531924 GJA8P48165 433 aa17.92■□□□□ 0.46
VPS28-215ENST00000531924 IRF5Q13568 498 aa17.92■□□□□ 0.46
VPS28-215ENST00000531924 TTF1Q15361 905 aaPredicted RBP17.92■□□□□ 0.46
VPS28-215ENST00000531924 SH3D19Q5HYK7 790 aa17.92■□□□□ 0.46
VPS28-215ENST00000531924 CLASRPQ8N2M8 674 aaKnown RBP17.92■□□□□ 0.46
VPS28-215ENST00000531924 PXYLP1Q8TE99 480 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms