RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 HIBADHP31937 336 aaKnown RBP10.47□□□□□ -0.73
CD44-232ENST00000531118 GNAI1P63096 354 aa10.47□□□□□ -0.73
CD44-232ENST00000531118 TRIM32Q13049 653 aa10.47□□□□□ -0.73
CD44-232ENST00000531118 CHAF1AQ13111 956 aaPredicted RBP10.47□□□□□ -0.73
CD44-232ENST00000531118 ZNF710Q8N1W2 664 aa10.47□□□□□ -0.73
CD44-232ENST00000531118 SMCR8Q8TEV9 937 aaPredicted RBP10.47□□□□□ -0.73
CD44-232ENST00000531118 SYMPKQ92797 1274 aaKnown RBP10.47□□□□□ -0.73
CD44-232ENST00000531118 COA7Q96BR5 231 aa10.47□□□□□ -0.73
CD44-232ENST00000531118 ZDHHC15Q96MV8 337 aa10.47□□□□□ -0.73
CD44-232ENST00000531118 MYH16Q9H6N6 1097 aa10.47□□□□□ -0.73
CD44-232ENST00000531118 EMILIN3Q9NT22 766 aa10.47□□□□□ -0.73
CD44-232ENST00000531118 OGDHLQ9ULD0 1010 aa10.47□□□□□ -0.73
CD44-232ENST00000531118 SLC45A1Q9Y2W3 748 aa10.47□□□□□ -0.73
CD44-232ENST00000531118 CHMP3Q9Y3E7 222 aa10.47□□□□□ -0.73
CD44-232ENST00000531118 MAST3O60307 1309 aa10.47□□□□□ -0.73
CD44-232ENST00000531118 ATRNL1Q5VV63 1379 aa10.47□□□□□ -0.73
CD44-232ENST00000531118 PLIN1O60240 522 aa10.46□□□□□ -0.73
CD44-232ENST00000531118 FAM110CQ1W6H9 321 aa10.46□□□□□ -0.73
CD44-232ENST00000531118 APOBEC3HQ6NTF7 200 aaKnown RBP10.46□□□□□ -0.73
CD44-232ENST00000531118 GADL1Q6ZQY3 521 aa10.46□□□□□ -0.73
CD44-232ENST00000531118 TBC1D22AQ8WUA7 517 aa10.46□□□□□ -0.73
CD44-232ENST00000531118 ZNF594Q96JF6 807 aaPredicted RBP10.46□□□□□ -0.73
CD44-232ENST00000531118 FAM84BQ96KN1 310 aaPredicted RBP10.46□□□□□ -0.73
CD44-232ENST00000531118 HMX1Q9NP08 348 aaPredicted RBP10.46□□□□□ -0.73
CD44-232ENST00000531118 IQSEC3Q9UPP2 1182 aaPredicted RBP10.46□□□□□ -0.73
CD44-232ENST00000531118 TNFRSF10AO00220 468 aa10.45□□□□□ -0.74
CD44-232ENST00000531118 COL6A1P12109 1028 aa10.45□□□□□ -0.74
CD44-232ENST00000531118 FOXO4P98177 505 aa10.45□□□□□ -0.74
CD44-232ENST00000531118 UBE4AQ14139 1066 aa10.45□□□□□ -0.74
CD44-232ENST00000531118 LRRC26Q2I0M4 334 aa10.45□□□□□ -0.74
CD44-232ENST00000531118 TAF7LQ5H9L4 462 aa10.45□□□□□ -0.74
CD44-232ENST00000531118 G2E3Q7L622 706 aa10.45□□□□□ -0.74
CD44-232ENST00000531118 FASTKD5Q7L8L6 764 aaKnown RBP10.45□□□□□ -0.74
CD44-232ENST00000531118 ANKRD13CQ8N6S4 541 aa10.45□□□□□ -0.74
CD44-232ENST00000531118 TSPYL6Q8N831 410 aa10.45□□□□□ -0.74
CD44-232ENST00000531118 FAM151AQ8WW52 585 aa10.45□□□□□ -0.74
CD44-232ENST00000531118 MYLIPQ8WY64 445 aa10.45□□□□□ -0.74
CD44-232ENST00000531118 TRIB2Q92519 343 aa10.45□□□□□ -0.74
CD44-232ENST00000531118 STK31Q9BXU1 1019 aa10.45□□□□□ -0.74
CD44-232ENST00000531118 CHMP4AQ9BY43 222 aa10.45□□□□□ -0.74
CD44-232ENST00000531118 CNNM1Q9NRU3 951 aa10.45□□□□□ -0.74
CD44-232ENST00000531118 RLFQ13129 1914 aa10.45□□□□□ -0.74
CD44-232ENST00000531118 FOSL2P15408 326 aa10.44□□□□□ -0.74
CD44-232ENST00000531118 TJAP1Q5JTD0 557 aa10.44□□□□□ -0.74
CD44-232ENST00000531118 LDHAL6AQ6ZMR3 332 aa10.44□□□□□ -0.74
CD44-232ENST00000531118 SCYL3Q8IZE3 742 aa10.44□□□□□ -0.74
CD44-232ENST00000531118 FAM122AQ96E09 287 aa10.44□□□□□ -0.74
CD44-232ENST00000531118 MYH2Q9UKX2 1941 aa10.44□□□□□ -0.74
CD44-232ENST00000531118 PIEZO1Q92508 2521 aa10.43□□□□□ -0.74
CD44-232ENST00000531118 RFX7Q2KHR2 1363 aa10.43□□□□□ -0.74
CD44-232ENST00000531118 TMEM265A0A087WTH1 108 aa10.43□□□□□ -0.74
CD44-232ENST00000531118 ZNF316A6NFI3 1004 aaPredicted RBP10.43□□□□□ -0.74
CD44-232ENST00000531118 PTPRAP18433 802 aa10.43□□□□□ -0.74
CD44-232ENST00000531118 NFIAQ12857 509 aa10.43□□□□□ -0.74
CD44-232ENST00000531118 MAP3K21Q5TCX8 1036 aa10.43□□□□□ -0.74
CD44-232ENST00000531118 LINS1Q8NG48 757 aa10.43□□□□□ -0.74
CD44-232ENST00000531118 DNAAF4Q8WXU2 420 aa10.43□□□□□ -0.74
CD44-232ENST00000531118 TTYH1Q9H313 450 aaPredicted RBP10.43□□□□□ -0.74
CD44-232ENST00000531118 AGTPBP1Q9UPW5 1226 aa10.43□□□□□ -0.74
CD44-232ENST00000531118 PCDHGA4Q9Y5G9 962 aa10.43□□□□□ -0.74
CD44-232ENST00000531118 DPYSL4O14531 572 aa10.42□□□□□ -0.74
CD44-232ENST00000531118 CALD1Q05682 793 aaKnown RBP10.42□□□□□ -0.74
CD44-232ENST00000531118 TCP10Q12799 353 aa10.42□□□□□ -0.74
CD44-232ENST00000531118 FLIIQ13045 1269 aa10.42□□□□□ -0.74
CD44-232ENST00000531118 WDR43Q15061 677 aaKnown RBP eCLIP10.42□□□□□ -0.74
CD44-232ENST00000531118 CCDC57Q2TAC2 916 aa10.42□□□□□ -0.74
CD44-232ENST00000531118 EPHA10Q5JZY3 1008 aa10.42□□□□□ -0.74
CD44-232ENST00000531118 HHIPL2Q6UWX4 724 aa10.42□□□□□ -0.74
CD44-232ENST00000531118 LMBR1LQ6UX01 489 aa10.42□□□□□ -0.74
CD44-232ENST00000531118 SEMA6BQ9H3T3 888 aa10.42□□□□□ -0.74
CD44-232ENST00000531118 PICK1Q9NRD5 415 aa10.42□□□□□ -0.74
CD44-232ENST00000531118 PNMA3Q9UL41 463 aa10.42□□□□□ -0.74
CD44-232ENST00000531118 DAGLAQ9Y4D2 1042 aa10.42□□□□□ -0.74
CD44-232ENST00000531118 AFG3L2Q9Y4W6 797 aa10.42□□□□□ -0.74
CD44-232ENST00000531118 ZHX2Q9Y6X8 837 aa10.42□□□□□ -0.74
CD44-232ENST00000531118 MYO9BQ13459 2157 aa10.41□□□□□ -0.74
CD44-232ENST00000531118 TRIM75PA6NK02 468 aa10.41□□□□□ -0.74
CD44-232ENST00000531118 SPDYE16A6NNV3 312 aaPredicted RBP10.41□□□□□ -0.74
CD44-232ENST00000531118 TREML2Q5T2D2 321 aa10.41□□□□□ -0.74
CD44-232ENST00000531118 FBXO33Q7Z6M2 555 aa10.41□□□□□ -0.74
CD44-232ENST00000531118 VPS37DQ86XT2 251 aa10.41□□□□□ -0.74
CD44-232ENST00000531118 USP38Q8NB14 1042 aa10.41□□□□□ -0.74
CD44-232ENST00000531118 LBHD1Q9BQE6 289 aaPredicted RBP10.41□□□□□ -0.74
CD44-232ENST00000531118 MRIQ9BWK5 157 aa10.41□□□□□ -0.74
CD44-232ENST00000531118 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.41□□□□□ -0.74
CD44-232ENST00000531118 GJD2Q9UKL4 321 aa10.41□□□□□ -0.74
CD44-232ENST00000531118 SUGT1Q9Y2Z0 365 aa10.41□□□□□ -0.74
CD44-232ENST00000531118 BDP1A6H8Y1 2624 aa10.41□□□□□ -0.74
CD44-232ENST00000531118 MYBBP1AQ9BQG0 1328 aaKnown RBP10.4□□□□□ -0.74
CD44-232ENST00000531118 PHF20L1A8MW92 1017 aa10.4□□□□□ -0.74
CD44-232ENST00000531118 FRAT2O75474 233 aaPredicted RBP10.4□□□□□ -0.74
CD44-232ENST00000531118 FKBP5Q13451 457 aaPredicted RBP10.4□□□□□ -0.74
CD44-232ENST00000531118 RALBP1Q15311 655 aa10.4□□□□□ -0.74
CD44-232ENST00000531118 CDC42EP5Q6NZY7 148 aa10.4□□□□□ -0.74
CD44-232ENST00000531118 CCDC84Q86UT8 332 aaPredicted RBP10.4□□□□□ -0.74
CD44-232ENST00000531118 PUS3Q9BZE2 481 aaKnown RBP10.4□□□□□ -0.74
CD44-232ENST00000531118 FAM198AQ9UFP1 575 aa10.4□□□□□ -0.74
CD44-232ENST00000531118 DNAH12Q6ZR08 3092 aa10.39□□□□□ -0.75
CD44-232ENST00000531118 HOXB1P14653 301 aaPredicted RBP10.39□□□□□ -0.75
CD44-232ENST00000531118 ZKSCAN1P17029 563 aaPredicted RBP10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms