RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 TUBB2AQ13885 445 aa15.99■□□□□ 0.15
PCF11-204ENST00000530660 TLDC1Q6P9B6 456 aa15.99■□□□□ 0.15
PCF11-204ENST00000530660 CCDC26Q8TAB7 109 aa15.99■□□□□ 0.15
PCF11-204ENST00000530660 ARL8AQ96BM9 186 aa15.99■□□□□ 0.15
PCF11-204ENST00000530660 TUBB2BQ9BVA1 445 aa15.99■□□□□ 0.15
PCF11-204ENST00000530660 BOLA2Q9H3K6 86 aa15.99■□□□□ 0.15
PCF11-204ENST00000530660 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.99■□□□□ 0.15
PCF11-204ENST00000530660 NFE2L3Q9Y4A8 694 aa15.99■□□□□ 0.15
PCF11-204ENST00000530660 EZRP15311 586 aaKnown RBP15.99■□□□□ 0.15
PCF11-204ENST00000530660 SYKP43405 635 aa15.99■□□□□ 0.15
PCF11-204ENST00000530660 AMPD2Q01433 879 aa15.99■□□□□ 0.15
PCF11-204ENST00000530660 SH2D3CQ8N5H7 860 aa15.99■□□□□ 0.15
PCF11-204ENST00000530660 RRP36Q96EU6 259 aaKnown RBP15.99■□□□□ 0.15
PCF11-204ENST00000530660 EDC3Q96F86 508 aaKnown RBP15.99■□□□□ 0.15
PCF11-204ENST00000530660 PPARDQ03181 441 aa15.98■□□□□ 0.15
PCF11-204ENST00000530660 FMR1Q06787 632 aaKnown RBP eCLIP15.98■□□□□ 0.151e-6■■■■■ 35.7
PCF11-204ENST00000530660 HSP90AB4PQ58FF6 505 aa15.98■□□□□ 0.15
PCF11-204ENST00000530660 KCNG4Q8TDN1 519 aa15.98■□□□□ 0.15
PCF11-204ENST00000530660 SH3GL3Q99963 347 aa15.98■□□□□ 0.15
PCF11-204ENST00000530660 AGLP35573 1532 aa15.98■□□□□ 0.15
PCF11-204ENST00000530660 ZC3H12AQ5D1E8 599 aaKnown RBP15.98■□□□□ 0.15
PCF11-204ENST00000530660 FKBP15Q5T1M5 1219 aa15.98■□□□□ 0.15
PCF11-204ENST00000530660 KCTD16Q68DU8 428 aa15.98■□□□□ 0.15
PCF11-204ENST00000530660 PARP9Q8IXQ6 854 aa15.98■□□□□ 0.15
PCF11-204ENST00000530660 MICAL1Q8TDZ2 1067 aa15.98■□□□□ 0.15
PCF11-204ENST00000530660 EYA1Q99502 592 aa15.98■□□□□ 0.15
PCF11-204ENST00000530660 CCDC8Q9H0W5 538 aaPredicted RBP15.98■□□□□ 0.15
PCF11-204ENST00000530660 TAF5LO75529 589 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 NAP1L1P55209 391 aaKnown RBP15.97■□□□□ 0.15
PCF11-204ENST00000530660 NBPF9Q3BBW0 867 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 NAA35Q5VZE5 725 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 LLPHQ9BRT6 129 aaKnown RBP15.97■□□□□ 0.15
PCF11-204ENST00000530660 SAMSN1Q9NSI8 373 aaKnown RBP15.97■□□□□ 0.15
PCF11-204ENST00000530660 HMG20BQ9P0W2 317 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 CPSF2Q9P2I0 782 aaKnown RBP15.97■□□□□ 0.15
PCF11-204ENST00000530660 TRIM10Q9UDY6 481 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 PI4KAP2A4QPH2 592 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 FOXN1O15353 648 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 ANXA1P04083 346 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 ACCSLQ4AC99 568 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 CYB5D1Q6P9G0 228 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 RASGRP2Q7LDG7 609 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 TICAM2Q86XR7 235 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 PI4KAP1Q8N8J0 262 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 TPX2Q9ULW0 747 aaKnown RBP15.97■□□□□ 0.15
PCF11-204ENST00000530660 PCDHA5Q9Y5H7 936 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 RIMBP3CA6NJZ7 1639 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 RIMBP3BA6NNM3 1639 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 RIMBP3Q9UFD9 1639 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 PXDNLA1KZ92 1463 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 RGPD1P0DJD0 1748 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 ZNF827Q17R98 1081 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 IL17REQ8NFR9 667 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 ITFG2Q969R8 447 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 GPATCH3Q96I76 525 aa15.97■□□□□ 0.15
PCF11-204ENST00000530660 ATXN2Q99700 1313 aaKnown RBP15.97■□□□□ 0.15
PCF11-204ENST00000530660 SEC24CP53992 1094 aa15.96■□□□□ 0.15
PCF11-204ENST00000530660 KCNB1Q14721 858 aa15.96■□□□□ 0.15
PCF11-204ENST00000530660 CCDC129Q6ZRS4 1044 aa15.96■□□□□ 0.15
PCF11-204ENST00000530660 CCDC114Q96M63 670 aa15.96■□□□□ 0.15
PCF11-204ENST00000530660 GNAT3A8MTJ3 354 aa15.96■□□□□ 0.15
PCF11-204ENST00000530660 CYP21A2P08686 494 aa15.96■□□□□ 0.15
PCF11-204ENST00000530660 CMA1P23946 247 aa15.96■□□□□ 0.15
PCF11-204ENST00000530660 CDC25CP30307 473 aa15.96■□□□□ 0.15
PCF11-204ENST00000530660 MRPS25P82663 173 aaKnown RBP15.96■□□□□ 0.15
PCF11-204ENST00000530660 GUCY1A3Q02108 690 aa15.96■□□□□ 0.15
PCF11-204ENST00000530660 SPRED3Q2MJR0 410 aa15.96■□□□□ 0.15
PCF11-204ENST00000530660 TTMPQ5BVD1 217 aa15.96■□□□□ 0.15
PCF11-204ENST00000530660 BEND3Q5T5X7 828 aa15.96■□□□□ 0.15
PCF11-204ENST00000530660 SND1Q7KZF4 910 aaKnown RBP eCLIP15.96■□□□□ 0.15
PCF11-204ENST00000530660 PANX2Q96RD6 677 aa15.96■□□□□ 0.15
PCF11-204ENST00000530660 METP08581 1390 aa15.96■□□□□ 0.15
PCF11-204ENST00000530660 OPLAHO14841 1288 aa15.96■□□□□ 0.14
PCF11-204ENST00000530660 CCNI2Q6ZMN8 369 aaPredicted RBP15.96■□□□□ 0.14
PCF11-204ENST00000530660 CHST3Q7LGC8 479 aa15.96■□□□□ 0.14
PCF11-204ENST00000530660 TLR7Q9NYK1 1049 aaKnown RBP15.96■□□□□ 0.14
PCF11-204ENST00000530660 FDPSP14324 419 aaKnown RBP15.95■□□□□ 0.14
PCF11-204ENST00000530660 AMPHP49418 695 aa15.95■□□□□ 0.14
PCF11-204ENST00000530660 METTL16Q86W50 562 aaKnown RBP15.95■□□□□ 0.14
PCF11-204ENST00000530660 HAUS2Q9NVX0 235 aa15.95■□□□□ 0.14
PCF11-204ENST00000530660 ACEP12821 1306 aa15.95■□□□□ 0.14
PCF11-204ENST00000530660 COL15A1P39059 1388 aa15.95■□□□□ 0.14
PCF11-204ENST00000530660 MYO1BO43795 1136 aa15.95■□□□□ 0.14
PCF11-204ENST00000530660 ALDH1L1O75891 902 aa15.95■□□□□ 0.14
PCF11-204ENST00000530660 STOX1Q6ZVD7 989 aa15.95■□□□□ 0.14
PCF11-204ENST00000530660 FUKQ8N0W3 1084 aa15.95■□□□□ 0.14
PCF11-204ENST00000530660 HOOK1Q9UJC3 728 aaKnown RBP15.95■□□□□ 0.14
PCF11-204ENST00000530660 ZNF18P17022 549 aa15.94■□□□□ 0.14
PCF11-204ENST00000530660 HDLBPQ00341 1268 aaKnown RBP15.94■□□□□ 0.14
PCF11-204ENST00000530660 KRT32Q14532 448 aa15.94■□□□□ 0.14
PCF11-204ENST00000530660 PPFIBP1Q86W92 1011 aa15.94■□□□□ 0.14
PCF11-204ENST00000530660 LMBR1Q8WVP7 490 aa15.94■□□□□ 0.14
PCF11-204ENST00000530660 TBC1D31Q96DN5 1066 aa15.94■□□□□ 0.14
PCF11-204ENST00000530660 CARMIL3Q8ND23 1372 aa15.94■□□□□ 0.14
PCF11-204ENST00000530660 MED23Q9ULK4 1368 aa15.94■□□□□ 0.14
PCF11-204ENST00000530660 OVOS2A0A0J9YW53 1432 aa15.94■□□□□ 0.14
PCF11-204ENST00000530660 OVOS2Q6IE36 1432 aa15.94■□□□□ 0.14
PCF11-204ENST00000530660 CEP170BQ9Y4F5 1589 aaPredicted RBP15.94■□□□□ 0.14
PCF11-204ENST00000530660 YEATS4O95619 227 aa15.94■□□□□ 0.14
PCF11-204ENST00000530660 SPDYE1Q8NFV5 336 aaPredicted RBP15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms