RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 OSBPP22059 807 aa12.35□□□□□ -0.43
VPS28-204ENST00000526054 HOXD10P28358 340 aa12.35□□□□□ -0.43
VPS28-204ENST00000526054 CTGFP29279 349 aa12.35□□□□□ -0.43
VPS28-204ENST00000526054 ARID4AP29374 1257 aaPredicted RBP12.35□□□□□ -0.43
VPS28-204ENST00000526054 MECOMQ03112 1051 aa12.35□□□□□ -0.43
VPS28-204ENST00000526054 SH3BP5LQ7L8J4 393 aa12.35□□□□□ -0.43
VPS28-204ENST00000526054 PRRT2Q7Z6L0 340 aaPredicted RBP12.35□□□□□ -0.43
VPS28-204ENST00000526054 RAET1EQ8TD07 263 aa12.35□□□□□ -0.43
VPS28-204ENST00000526054 FAM163AQ96GL9 167 aaPredicted RBP12.35□□□□□ -0.43
VPS28-204ENST00000526054 ZBTB47Q9UFB7 747 aaPredicted RBP12.35□□□□□ -0.43
VPS28-204ENST00000526054 SRRDQ9UH36 339 aa12.35□□□□□ -0.43
VPS28-204ENST00000526054 ZHX2Q9Y6X8 837 aa12.35□□□□□ -0.43
VPS28-204ENST00000526054 LOC285556D6RIA3 1793 aa12.35□□□□□ -0.43
VPS28-204ENST00000526054 COL2A1P02458 1487 aaPredicted RBP12.34□□□□□ -0.43
VPS28-204ENST00000526054 FCGRTP55899 365 aa12.34□□□□□ -0.43
VPS28-204ENST00000526054 GPAT2Q6NUI2 795 aa12.34□□□□□ -0.43
VPS28-204ENST00000526054 PI16Q6UXB8 463 aa12.34□□□□□ -0.43
VPS28-204ENST00000526054 GADL1Q6ZQY3 521 aa12.34□□□□□ -0.43
VPS28-204ENST00000526054 FASTKD5Q7L8L6 764 aaKnown RBP12.34□□□□□ -0.43
VPS28-204ENST00000526054 SPATA5Q8NB90 893 aa12.34□□□□□ -0.43
VPS28-204ENST00000526054 BCL11AQ9H165 835 aa12.34□□□□□ -0.43
VPS28-204ENST00000526054 TLR7Q9NYK1 1049 aaKnown RBP12.34□□□□□ -0.43
VPS28-204ENST00000526054 HMG20BQ9P0W2 317 aa12.34□□□□□ -0.43
VPS28-204ENST00000526054 CEP290O15078 2479 aa12.34□□□□□ -0.43
VPS28-204ENST00000526054 GPR75-ASB3A0A0A6YYF3 556 aa12.33□□□□□ -0.44
VPS28-204ENST00000526054 CTNND1O60716 968 aaKnown RBP12.33□□□□□ -0.44
VPS28-204ENST00000526054 SLURP2P0DP57 97 aa12.33□□□□□ -0.44
VPS28-204ENST00000526054 BCRP11274 1271 aa12.33□□□□□ -0.44
VPS28-204ENST00000526054 GRK4P32298 578 aa12.33□□□□□ -0.44
VPS28-204ENST00000526054 RHBDL3P58872 404 aa12.33□□□□□ -0.44
VPS28-204ENST00000526054 GSTO1P78417 241 aa12.33□□□□□ -0.44
VPS28-204ENST00000526054 SMCR8Q8TEV9 937 aaPredicted RBP12.33□□□□□ -0.44
VPS28-204ENST00000526054 ZNF512BQ96KM6 892 aaPredicted RBP12.33□□□□□ -0.44
VPS28-204ENST00000526054 RAI14Q9P0K7 980 aa12.33□□□□□ -0.44
VPS28-204ENST00000526054 AFG3L2Q9Y4W6 797 aa12.33□□□□□ -0.44
VPS28-204ENST00000526054 FOCADQ5VW36 1801 aa12.32□□□□□ -0.44
VPS28-204ENST00000526054 CDK5RAP2Q96SN8 1893 aa12.32□□□□□ -0.44
VPS28-204ENST00000526054 TRIM75PA6NK02 468 aa12.32□□□□□ -0.44
VPS28-204ENST00000526054 SMARCA5O60264 1052 aaPredicted RBP12.32□□□□□ -0.44
VPS28-204ENST00000526054 LDHCP07864 332 aa12.32□□□□□ -0.44
VPS28-204ENST00000526054 MCAMP43121 646 aa12.32□□□□□ -0.44
VPS28-204ENST00000526054 MAP3K10Q02779 954 aa12.32□□□□□ -0.44
VPS28-204ENST00000526054 PRKCZQ05513 592 aa12.32□□□□□ -0.44
VPS28-204ENST00000526054 MTFR1Q15390 333 aa12.32□□□□□ -0.44
VPS28-204ENST00000526054 HABP4Q5JVS0 413 aaKnown RBP12.32□□□□□ -0.44
VPS28-204ENST00000526054 TBC1D9Q6ZT07 1266 aa12.32□□□□□ -0.44
VPS28-204ENST00000526054 ZNF384Q8TF68 577 aa12.32□□□□□ -0.44
VPS28-204ENST00000526054 NSUN4Q96CB9 384 aaKnown RBP12.32□□□□□ -0.44
VPS28-204ENST00000526054 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.32□□□□□ -0.44
VPS28-204ENST00000526054 SLC45A1Q9Y2W3 748 aa12.32□□□□□ -0.44
VPS28-204ENST00000526054 SIPA1L1O43166 1804 aa12.32□□□□□ -0.44
VPS28-204ENST00000526054 FAM196BA6NMK8 535 aa12.31□□□□□ -0.44
VPS28-204ENST00000526054 NPM3O75607 178 aaKnown RBP12.31□□□□□ -0.44
VPS28-204ENST00000526054 MAP4K4O95819 1239 aaPredicted RBP12.31□□□□□ -0.44
VPS28-204ENST00000526054 CCDC84Q86UT8 332 aaPredicted RBP12.31□□□□□ -0.44
VPS28-204ENST00000526054 NKX2-3Q8TAU0 364 aa12.31□□□□□ -0.44
VPS28-204ENST00000526054 SHISA4Q96DD7 197 aa12.31□□□□□ -0.44
VPS28-204ENST00000526054 GPATCH3Q96I76 525 aa12.31□□□□□ -0.44
VPS28-204ENST00000526054 OSBPL5Q9H0X9 879 aaPredicted RBP12.31□□□□□ -0.44
VPS28-204ENST00000526054 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.31□□□□□ -0.44
VPS28-204ENST00000526054 LRP2BPQ9P2M1 347 aa12.31□□□□□ -0.44
VPS28-204ENST00000526054 BIN2Q9UBW5 565 aaPredicted RBP12.31□□□□□ -0.44
VPS28-204ENST00000526054 AGTPBP1Q9UPW5 1226 aa12.31□□□□□ -0.44
VPS28-204ENST00000526054 MYO5AQ9Y4I1 1855 aaKnown RBP12.3□□□□□ -0.44
VPS28-204ENST00000526054 TBC1D12O60347 775 aa12.3□□□□□ -0.44
VPS28-204ENST00000526054 UBXN2AP68543 259 aa12.3□□□□□ -0.44
VPS28-204ENST00000526054 ANKRD45Q5TZF3 282 aa12.3□□□□□ -0.44
VPS28-204ENST00000526054 SMC5Q8IY18 1101 aa12.3□□□□□ -0.44
VPS28-204ENST00000526054 TEX11Q8IYF3 940 aa12.3□□□□□ -0.44
VPS28-204ENST00000526054 SLAIN1Q8ND83 568 aa12.3□□□□□ -0.44
VPS28-204ENST00000526054 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.3□□□□□ -0.44
VPS28-204ENST00000526054 NOL10Q9BSC4 688 aaKnown RBP12.3□□□□□ -0.44
VPS28-204ENST00000526054 PNMA3Q9UL41 463 aa12.3□□□□□ -0.44
VPS28-204ENST00000526054 TNPO2O14787 897 aaKnown RBP12.29□□□□□ -0.44
VPS28-204ENST00000526054 IGHDP01880 384 aa12.29□□□□□ -0.44
VPS28-204ENST00000526054 CCL5P13501 91 aa12.29□□□□□ -0.44
VPS28-204ENST00000526054 RNF208Q9H0X6 261 aa12.29□□□□□ -0.44
VPS28-204ENST00000526054 SNRKQ9NRH2 765 aa12.29□□□□□ -0.44
VPS28-204ENST00000526054 GABRQQ9UN88 632 aa12.29□□□□□ -0.44
VPS28-204ENST00000526054 MYH7P12883 1935 aa12.29□□□□□ -0.44
VPS28-204ENST00000526054 IGSF3O75054 1194 aa12.28□□□□□ -0.44
VPS28-204ENST00000526054 GJB1P08034 283 aa12.28□□□□□ -0.44
VPS28-204ENST00000526054 ZAP70P43403 619 aa12.28□□□□□ -0.44
VPS28-204ENST00000526054 GJA8P48165 433 aa12.28□□□□□ -0.44
VPS28-204ENST00000526054 FLT3LGP49771 235 aa12.28□□□□□ -0.44
VPS28-204ENST00000526054 TREML2Q5T2D2 321 aa12.28□□□□□ -0.44
VPS28-204ENST00000526054 NAA16Q6N069 864 aaPredicted RBP12.28□□□□□ -0.44
VPS28-204ENST00000526054 ANKRD13CQ8N6S4 541 aa12.28□□□□□ -0.44
VPS28-204ENST00000526054 PROCA1Q8NCQ7 364 aaPredicted RBP12.28□□□□□ -0.44
VPS28-204ENST00000526054 SH3RF3Q8TEJ3 882 aaPredicted RBP12.28□□□□□ -0.44
VPS28-204ENST00000526054 TBC1D2Q9BYX2 928 aa12.28□□□□□ -0.44
VPS28-204ENST00000526054 ECHDC1Q9NTX5 307 aa12.28□□□□□ -0.44
VPS28-204ENST00000526054 AATFQ9NY61 560 aaKnown RBP eCLIP12.28□□□□□ -0.446e-6■■■■□ 25.6
VPS28-204ENST00000526054 HERC5Q9UII4 1024 aaKnown RBP12.28□□□□□ -0.44
VPS28-204ENST00000526054 H0YGN5 161 aa12.27□□□□□ -0.45
VPS28-204ENST00000526054 ADCY3O60266 1144 aa12.27□□□□□ -0.45
VPS28-204ENST00000526054 BAG3O95817 575 aa12.27□□□□□ -0.45
VPS28-204ENST00000526054 PLCG2P16885 1265 aa12.27□□□□□ -0.45
VPS28-204ENST00000526054 ATP5JP18859 108 aa12.27□□□□□ -0.45
VPS28-204ENST00000526054 CAP2P40123 477 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 105.9 ms