RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 PARP2Q9UGN5 583 aa6.44□□□□□ -1.38
CD44-219ENST00000525685 OXCT1P55809 520 aa6.43□□□□□ -1.38
CD44-219ENST00000525685 LRFN4Q6PJG9 635 aa6.43□□□□□ -1.38
CD44-219ENST00000525685 CBLL1Q75N03 491 aa6.43□□□□□ -1.38
CD44-219ENST00000525685 FAM214BQ7L5A3 538 aa6.43□□□□□ -1.38
CD44-219ENST00000525685 PLD6Q8N2A8 252 aaKnown RBP6.43□□□□□ -1.38
CD44-219ENST00000525685 NETO1Q8TDF5 533 aa6.43□□□□□ -1.38
CD44-219ENST00000525685 MKNK2Q9HBH9 465 aa6.43□□□□□ -1.38
CD44-219ENST00000525685 VTI1BQ9UEU0 232 aa6.43□□□□□ -1.38
CD44-219ENST00000525685 ZNF16P17020 682 aaPredicted RBP6.42□□□□□ -1.38
CD44-219ENST00000525685 RPS26P62854 115 aaKnown RBP6.42□□□□□ -1.38
CD44-219ENST00000525685 TAGLNQ01995 201 aaKnown RBP6.42□□□□□ -1.38
CD44-219ENST00000525685 CCDC85BQ15834 202 aaPredicted RBP6.42□□□□□ -1.38
CD44-219ENST00000525685 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.42□□□□□ -1.38
CD44-219ENST00000525685 CYFIP1Q7L576 1253 aa6.42□□□□□ -1.38
CD44-219ENST00000525685 SPRED2Q7Z698 418 aa6.42□□□□□ -1.38
CD44-219ENST00000525685 FBXO33Q7Z6M2 555 aa6.42□□□□□ -1.38
CD44-219ENST00000525685 STK11IPQ8N1F8 1099 aa6.42□□□□□ -1.38
CD44-219ENST00000525685 AGBL5Q8NDL9 886 aa6.42□□□□□ -1.38
CD44-219ENST00000525685 ELMO3Q96BJ8 720 aa6.42□□□□□ -1.38
CD44-219ENST00000525685 MISP3Q96FF7 219 aa6.42□□□□□ -1.38
CD44-219ENST00000525685 PRDM10Q9NQV6 1147 aa6.42□□□□□ -1.38
CD44-219ENST00000525685 PICK1Q9NRD5 415 aa6.42□□□□□ -1.38
CD44-219ENST00000525685 SLC5A6Q9Y289 635 aa6.42□□□□□ -1.38
CD44-219ENST00000525685 RBM47A0AV96 593 aaKnown RBP6.41□□□□□ -1.38
CD44-219ENST00000525685 PAX4O43316 350 aa6.41□□□□□ -1.38
CD44-219ENST00000525685 DAB2P98082 770 aa6.41□□□□□ -1.38
CD44-219ENST00000525685 MEI1Q5TIA1 1274 aa6.41□□□□□ -1.38
CD44-219ENST00000525685 ZNF574Q6ZN55 896 aaPredicted RBP6.41□□□□□ -1.38
CD44-219ENST00000525685 KCT2Q8NC54 265 aa6.41□□□□□ -1.38
CD44-219ENST00000525685 PLPPR2Q96GM1 343 aa6.41□□□□□ -1.38
CD44-219ENST00000525685 HEXIM2Q96MH2 286 aaKnown RBP6.41□□□□□ -1.38
CD44-219ENST00000525685 FAM161BQ96MY7 647 aa6.41□□□□□ -1.38
CD44-219ENST00000525685 PLAGL2Q9UPG8 496 aa6.41□□□□□ -1.38
CD44-219ENST00000525685 SORBS3O60504 671 aa6.4□□□□□ -1.38
CD44-219ENST00000525685 CEACAM5P06731 702 aa6.4□□□□□ -1.38
CD44-219ENST00000525685 CDK8P49336 464 aa6.4□□□□□ -1.38
CD44-219ENST00000525685 BNIP3Q12983 259 aa6.4□□□□□ -1.38
CD44-219ENST00000525685 IFI16Q16666 785 aaKnown RBP6.4□□□□□ -1.38
CD44-219ENST00000525685 CDC37L1Q7L3B6 337 aa6.4□□□□□ -1.38
CD44-219ENST00000525685 ARMCX6Q7L4S7 300 aa6.4□□□□□ -1.38
CD44-219ENST00000525685 HDXQ7Z353 690 aa6.4□□□□□ -1.38
CD44-219ENST00000525685 ZNF507Q8TCN5 953 aa6.4□□□□□ -1.38
CD44-219ENST00000525685 FMNL2Q96PY5 1086 aa6.4□□□□□ -1.38
CD44-219ENST00000525685 KRTAP4-12Q9BQ66 201 aa6.4□□□□□ -1.38
CD44-219ENST00000525685 PCDHB5Q9Y5E4 795 aa6.4□□□□□ -1.38
CD44-219ENST00000525685 SNCAIPQ9Y6H5 919 aa6.4□□□□□ -1.38
CD44-219ENST00000525685 PRAMEF27A3QJZ7 478 aa6.39□□□□□ -1.39
CD44-219ENST00000525685 IGF2BP3O00425 579 aaKnown RBP eCLIP6.39□□□□□ -1.39
CD44-219ENST00000525685 LIG3P49916 1009 aa6.39□□□□□ -1.39
CD44-219ENST00000525685 WIPI1Q5MNZ9 446 aaPredicted RBP6.39□□□□□ -1.39
CD44-219ENST00000525685 AGMOQ6ZNB7 445 aa6.39□□□□□ -1.39
CD44-219ENST00000525685 TMC4Q7Z404 712 aa6.39□□□□□ -1.39
CD44-219ENST00000525685 WNT10AQ9GZT5 417 aa6.39□□□□□ -1.39
CD44-219ENST00000525685 TNKS2Q9H2K2 1166 aa6.39□□□□□ -1.39
CD44-219ENST00000525685 FBRSQ9HAH7 460 aa6.39□□□□□ -1.39
CD44-219ENST00000525685 VAV3Q9UKW4 847 aa6.39□□□□□ -1.39
CD44-219ENST00000525685 TMEM265A0A087WTH1 108 aa6.38□□□□□ -1.39
CD44-219ENST00000525685 LRIG2O94898 1065 aa6.38□□□□□ -1.39
CD44-219ENST00000525685 EOMESO95936 686 aa6.38□□□□□ -1.39
CD44-219ENST00000525685 PRKCQQ04759 706 aa6.38□□□□□ -1.39
CD44-219ENST00000525685 SEPT6Q14141 434 aa6.38□□□□□ -1.39
CD44-219ENST00000525685 SLBPQ14493 270 aaKnown RBP eCLIP6.38□□□□□ -1.39
CD44-219ENST00000525685 MAP3K11Q16584 847 aa6.38□□□□□ -1.39
CD44-219ENST00000525685 ARHGAP27Q6ZUM4 889 aa6.38□□□□□ -1.39
CD44-219ENST00000525685 ZNF428Q96B54 188 aa6.38□□□□□ -1.39
CD44-219ENST00000525685 GTF2IRD1Q9UHL9 959 aa6.38□□□□□ -1.39
CD44-219ENST00000525685 E9PSI1 815 aa6.37□□□□□ -1.39
CD44-219ENST00000525685 GFRA2O00451 464 aa6.37□□□□□ -1.39
CD44-219ENST00000525685 CTSHP09668 335 aa6.37□□□□□ -1.39
CD44-219ENST00000525685 CD8BP10966 210 aa6.37□□□□□ -1.39
CD44-219ENST00000525685 ITIH2P19823 946 aa6.37□□□□□ -1.39
CD44-219ENST00000525685 CAP2P40123 477 aa6.37□□□□□ -1.39
CD44-219ENST00000525685 CD96P40200 585 aa6.37□□□□□ -1.39
CD44-219ENST00000525685 ST13P50502 369 aaKnown RBP6.37□□□□□ -1.39
CD44-219ENST00000525685 PLCL1Q15111 1095 aa6.37□□□□□ -1.39
CD44-219ENST00000525685 NKG7Q16617 165 aa6.37□□□□□ -1.39
CD44-219ENST00000525685 AOC3Q16853 763 aa6.37□□□□□ -1.39
CD44-219ENST00000525685 MRRFQ96E11 262 aaKnown RBP6.37□□□□□ -1.39
CD44-219ENST00000525685 HRASLS5Q96KN8 279 aa6.37□□□□□ -1.39
CD44-219ENST00000525685 SLITRK5O94991 958 aa6.36□□□□□ -1.39
CD44-219ENST00000525685 ITGB5P18084 799 aa6.36□□□□□ -1.39
CD44-219ENST00000525685 TFE3P19532 575 aaPredicted RBP6.36□□□□□ -1.39
CD44-219ENST00000525685 LMNB1P20700 586 aa6.36□□□□□ -1.39
CD44-219ENST00000525685 FUT4P22083 530 aa6.36□□□□□ -1.39
CD44-219ENST00000525685 ETF1P62495 437 aaKnown RBP6.36□□□□□ -1.39
CD44-219ENST00000525685 TAF1CQ15572 869 aaPredicted RBP6.36□□□□□ -1.39
CD44-219ENST00000525685 NKPD1Q17RQ9 610 aa6.36□□□□□ -1.39
CD44-219ENST00000525685 ZNF792Q3KQV3 632 aa6.36□□□□□ -1.39
CD44-219ENST00000525685 NPM2Q86SE8 214 aaKnown RBP6.36□□□□□ -1.39
CD44-219ENST00000525685 SPACA3Q8IXA5 215 aa6.36□□□□□ -1.39
CD44-219ENST00000525685 NOC4LQ9BVI4 516 aaKnown RBP6.36□□□□□ -1.39
CD44-219ENST00000525685 FOXQ1Q9C009 403 aa6.36□□□□□ -1.39
CD44-219ENST00000525685 RNF114Q9Y508 228 aa6.36□□□□□ -1.39
CD44-219ENST00000525685 SNX11Q9Y5W9 270 aa6.36□□□□□ -1.39
CD44-219ENST00000525685 USP31Q70CQ4 1352 aa6.35□□□□□ -1.39
CD44-219ENST00000525685 RLBP1P12271 317 aa6.35□□□□□ -1.39
CD44-219ENST00000525685 TSNAXIP1Q2TAA8 658 aa6.35□□□□□ -1.39
CD44-219ENST00000525685 HID1Q8IV36 788 aa6.35□□□□□ -1.39
CD44-219ENST00000525685 MIR1-1HGQ9H1L0 117 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms