RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 ERO1AQ96HE7 468 aa12.74□□□□□ -0.37
HDAC9-228ENST00000524023 MTA3Q9BTC8 594 aa12.74□□□□□ -0.37
HDAC9-228ENST00000524023 UTP14AQ9BVJ6 771 aaKnown RBP12.74□□□□□ -0.37
HDAC9-228ENST00000524023 FOXP1Q9H334 677 aaPredicted RBP12.74□□□□□ -0.37
HDAC9-228ENST00000524023 COL14A1Q05707 1796 aaKnown RBP12.74□□□□□ -0.37
HDAC9-228ENST00000524023 PLCH1Q4KWH8 1693 aa12.74□□□□□ -0.37
HDAC9-228ENST00000524023 FOXN1O15353 648 aa12.73□□□□□ -0.37
HDAC9-228ENST00000524023 SLU7O95391 586 aaKnown RBP12.73□□□□□ -0.37
HDAC9-228ENST00000524023 SPECC1Q5M775 1068 aa12.73□□□□□ -0.37
HDAC9-228ENST00000524023 CRACR2BQ8N4Y2 399 aaPredicted RBP12.73□□□□□ -0.37
HDAC9-228ENST00000524023 BCL11BQ9C0K0 894 aaPredicted RBP12.73□□□□□ -0.37
HDAC9-228ENST00000524023 FBXO2Q9UK22 296 aaPredicted RBP12.73□□□□□ -0.37
HDAC9-228ENST00000524023 MYH6P13533 1939 aa12.73□□□□□ -0.37
HDAC9-228ENST00000524023 PHLPP1O60346 1717 aa12.73□□□□□ -0.37
HDAC9-228ENST00000524023 ERICH2A1L162 156 aa12.73□□□□□ -0.37
HDAC9-228ENST00000524023 DEXIO95424 95 aa12.73□□□□□ -0.37
HDAC9-228ENST00000524023 BMP6P22004 513 aa12.73□□□□□ -0.37
HDAC9-228ENST00000524023 PTPREP23469 700 aa12.73□□□□□ -0.37
HDAC9-228ENST00000524023 GRIN1Q05586 938 aa12.73□□□□□ -0.37
HDAC9-228ENST00000524023 CFAP100Q494V2 611 aa12.73□□□□□ -0.37
HDAC9-228ENST00000524023 CCDC152Q4G0S7 254 aa12.73□□□□□ -0.37
HDAC9-228ENST00000524023 RILPL1Q5EBL4 403 aa12.73□□□□□ -0.37
HDAC9-228ENST00000524023 INTS5Q6P9B9 1019 aaKnown RBP12.73□□□□□ -0.37
HDAC9-228ENST00000524023 VSTM4Q8IW00 320 aa12.73□□□□□ -0.37
HDAC9-228ENST00000524023 TMTC2Q8N394 836 aa12.73□□□□□ -0.37
HDAC9-228ENST00000524023 MIGA1Q8NAN2 632 aa12.73□□□□□ -0.37
HDAC9-228ENST00000524023 FANCLQ9NW38 375 aa12.73□□□□□ -0.37
HDAC9-228ENST00000524023 OGFRQ9NZT2 677 aa12.73□□□□□ -0.37
HDAC9-228ENST00000524023 PRDM4Q9UKN5 801 aa12.73□□□□□ -0.37
HDAC9-228ENST00000524023 DOT1LQ8TEK3 1739 aa12.73□□□□□ -0.37
HDAC9-228ENST00000524023 CCDC196A0A1B0GTZ2 297 aa12.72□□□□□ -0.37
HDAC9-228ENST00000524023 TUBB4AP04350 444 aa12.72□□□□□ -0.37
HDAC9-228ENST00000524023 IGHMBP2P38935 993 aaKnown RBP12.72□□□□□ -0.37
HDAC9-228ENST00000524023 RCAN1P53805 252 aa12.72□□□□□ -0.37
HDAC9-228ENST00000524023 PDE4BQ07343 736 aa12.72□□□□□ -0.37
HDAC9-228ENST00000524023 CMTR1Q8N1G2 835 aaKnown RBP12.72□□□□□ -0.37
HDAC9-228ENST00000524023 CCDC82Q8N4S0 544 aa12.72□□□□□ -0.37
HDAC9-228ENST00000524023 TMX1Q9H3N1 280 aa12.72□□□□□ -0.37
HDAC9-228ENST00000524023 RNF41Q9H4P4 317 aaPredicted RBP12.72□□□□□ -0.37
HDAC9-228ENST00000524023 L2HGDHQ9H9P8 463 aa12.72□□□□□ -0.37
HDAC9-228ENST00000524023 CCDC87Q9NVE4 849 aa12.72□□□□□ -0.37
HDAC9-228ENST00000524023 LRP2BPQ9P2M1 347 aa12.72□□□□□ -0.37
HDAC9-228ENST00000524023 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.72□□□□□ -0.37
HDAC9-228ENST00000524023 HOOK1Q9UJC3 728 aaKnown RBP12.72□□□□□ -0.37
HDAC9-228ENST00000524023 V9GYY5 206 aaPredicted RBP12.72□□□□□ -0.37
HDAC9-228ENST00000524023 DMTNQ08495 405 aa12.71□□□□□ -0.37
HDAC9-228ENST00000524023 NR5A1Q13285 461 aa12.71□□□□□ -0.37
HDAC9-228ENST00000524023 SYT10Q6XYQ8 523 aa12.71□□□□□ -0.37
HDAC9-228ENST00000524023 ZNF654Q8IZM8 581 aa12.71□□□□□ -0.37
HDAC9-228ENST00000524023 FANCBQ8NB91 859 aa12.71□□□□□ -0.37
HDAC9-228ENST00000524023 RTL9Q8NET4 1388 aa12.71□□□□□ -0.37
HDAC9-228ENST00000524023 WNK3Q9BYP7 1800 aa12.71□□□□□ -0.37
HDAC9-228ENST00000524023 TMEM232C9JQI7 657 aa12.71□□□□□ -0.37
HDAC9-228ENST00000524023 POLR2DO15514 142 aaKnown RBP12.71□□□□□ -0.37
HDAC9-228ENST00000524023 CCP110O43303 1012 aa12.71□□□□□ -0.37
HDAC9-228ENST00000524023 CAMTA2O94983 1202 aa12.71□□□□□ -0.37
HDAC9-228ENST00000524023 CHRNDQ07001 517 aa12.71□□□□□ -0.37
HDAC9-228ENST00000524023 PPARAQ07869 468 aa12.71□□□□□ -0.37
HDAC9-228ENST00000524023 POSTNQ15063 836 aa12.71□□□□□ -0.37
HDAC9-228ENST00000524023 PARP10Q53GL7 1025 aa12.71□□□□□ -0.37
HDAC9-228ENST00000524023 UTP14CQ5TAP6 766 aaKnown RBP12.71□□□□□ -0.37
HDAC9-228ENST00000524023 NT5DC1Q5TFE4 455 aa12.71□□□□□ -0.37
HDAC9-228ENST00000524023 ZNF579Q8NAF0 562 aaKnown RBP12.71□□□□□ -0.37
HDAC9-228ENST00000524023 ZNF397Q8NF99 534 aaPredicted RBP12.71□□□□□ -0.37
HDAC9-228ENST00000524023 PKNOX2Q96KN3 472 aa12.71□□□□□ -0.37
HDAC9-228ENST00000524023 DDX41Q9UJV9 622 aaKnown RBP12.71□□□□□ -0.37
HDAC9-228ENST00000524023 MAN1B1Q9UKM7 699 aa12.71□□□□□ -0.37
HDAC9-228ENST00000524023 PCDHB6Q9Y5E3 794 aa12.71□□□□□ -0.37
HDAC9-228ENST00000524023 LAMB2P55268 1798 aa12.7□□□□□ -0.38
HDAC9-228ENST00000524023 NTSR2O95665 410 aa12.7□□□□□ -0.38
HDAC9-228ENST00000524023 TOP1P11387 765 aaKnown RBP12.7□□□□□ -0.38
HDAC9-228ENST00000524023 CRKLP46109 303 aaKnown RBP12.7□□□□□ -0.38
HDAC9-228ENST00000524023 ELF2Q15723 593 aa12.7□□□□□ -0.38
HDAC9-228ENST00000524023 KMT5BQ4FZB7 885 aa12.7□□□□□ -0.38
HDAC9-228ENST00000524023 CCDC93Q567U6 631 aa12.7□□□□□ -0.38
HDAC9-228ENST00000524023 NUP133Q8WUM0 1156 aa12.7□□□□□ -0.38
HDAC9-228ENST00000524023 UBAC1Q9BSL1 405 aa12.7□□□□□ -0.38
HDAC9-228ENST00000524023 INTS13Q9NVM9 706 aa12.7□□□□□ -0.38
HDAC9-228ENST00000524023 SERTAD1Q9UHV2 236 aa12.7□□□□□ -0.38
HDAC9-228ENST00000524023 SRPRBQ9Y5M8 271 aaKnown RBP12.7□□□□□ -0.38
HDAC9-228ENST00000524023 BCL9LQ86UU0 1499 aa12.7□□□□□ -0.38
HDAC9-228ENST00000524023 PRR29P0C7W0 189 aa12.7□□□□□ -0.38
HDAC9-228ENST00000524023 CYP7A1P22680 504 aa12.7□□□□□ -0.38
HDAC9-228ENST00000524023 SARSP49591 514 aaKnown RBP12.7□□□□□ -0.38
HDAC9-228ENST00000524023 SEC23AQ15436 765 aa12.7□□□□□ -0.38
HDAC9-228ENST00000524023 ADGRA1Q86SQ6 560 aa12.7□□□□□ -0.38
HDAC9-228ENST00000524023 OXER1Q8TDS5 423 aa12.7□□□□□ -0.38
HDAC9-228ENST00000524023 ANAPC4Q9UJX5 808 aa12.7□□□□□ -0.38
HDAC9-228ENST00000524023 CEP131Q9UPN4 1083 aa12.7□□□□□ -0.38
HDAC9-228ENST00000524023 MYH2Q9UKX2 1941 aa12.69□□□□□ -0.38
HDAC9-228ENST00000524023 MINDY4BA8MYZ0 360 aa12.69□□□□□ -0.38
HDAC9-228ENST00000524023 ATP6V1AP38606 617 aa12.69□□□□□ -0.38
HDAC9-228ENST00000524023 ETF1P62495 437 aaKnown RBP12.69□□□□□ -0.38
HDAC9-228ENST00000524023 MORC3Q14149 939 aa12.69□□□□□ -0.38
HDAC9-228ENST00000524023 PTPN21Q16825 1174 aa12.69□□□□□ -0.38
HDAC9-228ENST00000524023 MLKLQ8NB16 471 aa12.69□□□□□ -0.38
HDAC9-228ENST00000524023 SDR42E1Q8WUS8 393 aa12.69□□□□□ -0.38
HDAC9-228ENST00000524023 IQSEC3Q9UPP2 1182 aaPredicted RBP12.69□□□□□ -0.38
HDAC9-228ENST00000524023 NIP7Q9Y221 180 aaKnown RBP eCLIP12.69□□□□□ -0.38
HDAC9-228ENST00000524023 MYH14Q7Z406 1995 aaKnown RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms