RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 TLL2Q9Y6L7 1015 aa9.3□□□□□ -0.92
LIMCH1-222ENST00000515847 CDK5RAP2Q96SN8 1893 aa9.3□□□□□ -0.92
LIMCH1-222ENST00000515847 FOCADQ5VW36 1801 aa9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 UNCXA6NJT0 531 aa9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 WDHD1O75717 1129 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 RGS3P49796 1198 aa9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 HUNKP57058 714 aa9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 RHBDL3P58872 404 aa9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 TCP10Q12799 353 aa9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 PICALMQ13492 652 aa9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 PRKG1Q13976 671 aa9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 BMP2KLQ5H9B9 411 aa9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 NBPF12Q5TAG4 269 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 ARMC9Q7Z3E5 817 aa9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 SAPCD2Q86UD0 394 aa9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 ZSCAN29Q8IWY8 852 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 C2orf69Q8N8R5 385 aa9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 MIGA1Q8NAN2 632 aa9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 SH3RF3Q8TEJ3 882 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 FAM151AQ8WW52 585 aa9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 ZNF287Q9HBT7 754 aa9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 DDX4Q9NQI0 724 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 HELLSQ9NRZ9 838 aa9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 ATP8A2Q9NTI2 1148 aa9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 AATFQ9NY61 560 aaKnown RBP eCLIP9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 MKRN1Q9UHC7 482 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 FZD1Q9UP38 647 aa9.29□□□□□ -0.92
LIMCH1-222ENST00000515847 OTOFQ9HC10 1997 aa9.28□□□□□ -0.92
LIMCH1-222ENST00000515847 TCRBV5S4A2TA0A5A2 114 aa9.28□□□□□ -0.92
LIMCH1-222ENST00000515847 RASSF10A6NK89 507 aa9.28□□□□□ -0.92
LIMCH1-222ENST00000515847 SNPHO15079 494 aa9.28□□□□□ -0.92
LIMCH1-222ENST00000515847 CHGBP05060 677 aa9.28□□□□□ -0.92
LIMCH1-222ENST00000515847 SLC3A2P08195 630 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-222ENST00000515847 IREB2P48200 963 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-222ENST00000515847 NT5C2P49902 561 aa9.28□□□□□ -0.92
LIMCH1-222ENST00000515847 DYNLL1P63167 89 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-222ENST00000515847 TTLL12Q14166 644 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-222ENST00000515847 SLFNL1Q499Z3 407 aa9.28□□□□□ -0.92
LIMCH1-222ENST00000515847 GIMAP6Q6P9H5 292 aa9.28□□□□□ -0.92
LIMCH1-222ENST00000515847 PAXIP1Q6ZW49 1069 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-222ENST00000515847 TTC6Q86TZ1 520 aa9.28□□□□□ -0.92
LIMCH1-222ENST00000515847 ZFPM1Q8IX07 1006 aa9.28□□□□□ -0.92
LIMCH1-222ENST00000515847 DNAJC5GQ8N7S2 189 aa9.28□□□□□ -0.92
LIMCH1-222ENST00000515847 ARPP21Q9UBL0 812 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-222ENST00000515847 AK9Q5TCS8 1911 aa9.28□□□□□ -0.92
LIMCH1-222ENST00000515847 ATRNL1Q5VV63 1379 aa9.27□□□□□ -0.93
LIMCH1-222ENST00000515847 UBE2Q2LH0YL09 131 aa9.27□□□□□ -0.93
LIMCH1-222ENST00000515847 MBD4O95243 580 aa9.27□□□□□ -0.93
LIMCH1-222ENST00000515847 DEFB115Q30KQ5 88 aa9.27□□□□□ -0.93
LIMCH1-222ENST00000515847 CYP4F22Q6NT55 531 aa9.27□□□□□ -0.93
LIMCH1-222ENST00000515847 KLRG1Q96E93 195 aa9.27□□□□□ -0.93
LIMCH1-222ENST00000515847 CSRNP1Q96S65 589 aa9.27□□□□□ -0.93
LIMCH1-222ENST00000515847 OSBPL5Q9H0X9 879 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-222ENST00000515847 HERC5Q9UII4 1024 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-222ENST00000515847 ANGEL1Q9UNK9 670 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-222ENST00000515847 FLT1P17948 1338 aa9.27□□□□□ -0.93
LIMCH1-222ENST00000515847 THSD7BQ9C0I4 1608 aa9.27□□□□□ -0.93
LIMCH1-222ENST00000515847 NAV1Q8NEY1 1877 aa9.26□□□□□ -0.93
LIMCH1-222ENST00000515847 DDX60LQ5H9U9 1706 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-222ENST00000515847 GPAA1O43292 621 aa9.26□□□□□ -0.93
LIMCH1-222ENST00000515847 PDE4AP27815 886 aa9.26□□□□□ -0.93
LIMCH1-222ENST00000515847 TDO2P48775 406 aa9.26□□□□□ -0.93
LIMCH1-222ENST00000515847 VEGFBP49765 207 aa9.26□□□□□ -0.93
LIMCH1-222ENST00000515847 GRM1Q13255 1194 aa9.26□□□□□ -0.93
LIMCH1-222ENST00000515847 MCMDC2Q4G0Z9 681 aa9.26□□□□□ -0.93
LIMCH1-222ENST00000515847 ZMYM1Q5SVZ6 1142 aa9.26□□□□□ -0.93
LIMCH1-222ENST00000515847 SH3BP5LQ7L8J4 393 aa9.26□□□□□ -0.93
LIMCH1-222ENST00000515847 CRACR2BQ8N4Y2 399 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-222ENST00000515847 TGFBRAP1Q8WUH2 860 aa9.26□□□□□ -0.93
LIMCH1-222ENST00000515847 HHIPL1Q96JK4 782 aa9.26□□□□□ -0.93
LIMCH1-222ENST00000515847 CAPNS2Q96L46 248 aa9.26□□□□□ -0.93
LIMCH1-222ENST00000515847 RIOK1Q9BRS2 568 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-222ENST00000515847 ZNF341Q9BYN7 854 aa9.26□□□□□ -0.93
LIMCH1-222ENST00000515847 GINM1Q9NU53 330 aa9.26□□□□□ -0.93
LIMCH1-222ENST00000515847 PI4KBQ9UBF8 816 aa9.26□□□□□ -0.93
LIMCH1-222ENST00000515847 CSADQ9Y600 493 aa9.26□□□□□ -0.93
LIMCH1-222ENST00000515847 SLC4A4Q9Y6R1 1079 aa9.26□□□□□ -0.93
LIMCH1-222ENST00000515847 SIPA1L1O43166 1804 aa9.26□□□□□ -0.93
LIMCH1-222ENST00000515847 DDTLA6NHG4 134 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 CDC45O75419 566 aa9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 USP2O75604 605 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 APPP05067 770 aa9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 POLR3DP05423 398 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 SDSP20132 328 aa9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 ECE1P42892 770 aa9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 ZNF157P51786 506 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 MAP3K11Q16584 847 aa9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 PPP4R3BQ5MIZ7 849 aa9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 RGMBQ6NW40 437 aa9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 KIAA1211Q6ZU35 1233 aa9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 MIGA2Q7L4E1 593 aa9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 RASAL3Q86YV0 1011 aa9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 MAPKAPK5Q8IW41 473 aa9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 LCORLQ8N3X6 602 aa9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 TBC1D2Q9BYX2 928 aa9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 NAPBQ9H115 298 aa9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 EHD4Q9H223 541 aa9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 SWAP70Q9UH65 585 aa9.25□□□□□ -0.93
LIMCH1-222ENST00000515847 CTNNA3Q9UI47 895 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms