RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 CHAF1AQ13111 956 aaPredicted RBP17.15■□□□□ 0.34
NUP54-217ENST00000514987 RILPL1Q5EBL4 403 aa17.15■□□□□ 0.34
NUP54-217ENST00000514987 RESP18Q5W5W9 173 aa17.15■□□□□ 0.34
NUP54-217ENST00000514987 TBC1D9BQ66K14 1250 aa17.15■□□□□ 0.34
NUP54-217ENST00000514987 TPTE2Q6XPS3 522 aa17.15■□□□□ 0.34
NUP54-217ENST00000514987 MYL10Q9BUA6 226 aa17.15■□□□□ 0.34
NUP54-217ENST00000514987 HOOK1Q9UJC3 728 aaKnown RBP17.15■□□□□ 0.34
NUP54-217ENST00000514987 PYCARDQ9ULZ3 195 aa17.15■□□□□ 0.34
NUP54-217ENST00000514987 MINDY4BA8MYZ0 360 aa17.14■□□□□ 0.33
NUP54-217ENST00000514987 WDHD1O75717 1129 aaPredicted RBP17.14■□□□□ 0.33
NUP54-217ENST00000514987 FGRP09769 529 aa17.14■□□□□ 0.33
NUP54-217ENST00000514987 SEC23AQ15436 765 aa17.14■□□□□ 0.33
NUP54-217ENST00000514987 C3orf67Q6ZVT6 689 aa17.14■□□□□ 0.33
NUP54-217ENST00000514987 NBPF11Q86T75 865 aa17.14■□□□□ 0.33
NUP54-217ENST00000514987 NBPF5PQ86XG9 351 aaPredicted RBP17.14■□□□□ 0.33
NUP54-217ENST00000514987 MYRIPQ8NFW9 859 aa17.14■□□□□ 0.33
NUP54-217ENST00000514987 NGLY1Q96IV0 654 aa17.14■□□□□ 0.33
NUP54-217ENST00000514987 MAP7D2Q96T17 732 aa17.14■□□□□ 0.33
NUP54-217ENST00000514987 RNF26Q9BY78 433 aaPredicted RBP17.14■□□□□ 0.33
NUP54-217ENST00000514987 RBM28Q9NW13 759 aaKnown RBP17.14■□□□□ 0.33
NUP54-217ENST00000514987 CEP131Q9UPN4 1083 aa17.14■□□□□ 0.33
NUP54-217ENST00000514987 MORC2Q9Y6X9 1032 aaPredicted RBP17.14■□□□□ 0.33
NUP54-217ENST00000514987 COL1A1P02452 1464 aaPredicted RBP17.13■□□□□ 0.33
NUP54-217ENST00000514987 AKAP17AQ02040 695 aaKnown RBP17.13■□□□□ 0.33
NUP54-217ENST00000514987 IQCA1Q86XH1 822 aa17.13■□□□□ 0.33
NUP54-217ENST00000514987 AOPEPQ8N6M6 819 aa17.13■□□□□ 0.33
NUP54-217ENST00000514987 KRI1Q8N9T8 703 aaKnown RBP17.13■□□□□ 0.33
NUP54-217ENST00000514987 BCL2L12Q9HB09 334 aa17.13■□□□□ 0.33
NUP54-217ENST00000514987 IMPACTQ9P2X3 320 aa17.13■□□□□ 0.33
NUP54-217ENST00000514987 IQSEC3Q9UPP2 1182 aaPredicted RBP17.13■□□□□ 0.33
NUP54-217ENST00000514987 COL4A1P02462 1669 aa17.12■□□□□ 0.33
NUP54-217ENST00000514987 NHSQ6T4R5 1651 aa17.12■□□□□ 0.33
NUP54-217ENST00000514987 TNKSO95271 1327 aa17.12■□□□□ 0.33
NUP54-217ENST00000514987 MYO1BO43795 1136 aa17.12■□□□□ 0.33
NUP54-217ENST00000514987 MARCKSP29966 332 aaPredicted RBP17.12■□□□□ 0.33
NUP54-217ENST00000514987 HIBADHP31937 336 aaKnown RBP17.12■□□□□ 0.33
NUP54-217ENST00000514987 GSDMDP57764 484 aa17.12■□□□□ 0.33
NUP54-217ENST00000514987 SPTY2D1Q68D10 685 aaPredicted RBP17.12■□□□□ 0.33
NUP54-217ENST00000514987 MTERF4Q7Z6M4 381 aaKnown RBP17.12■□□□□ 0.33
NUP54-217ENST00000514987 CATIPQ7Z7H3 387 aa17.12■□□□□ 0.33
NUP54-217ENST00000514987 ADGRA1Q86SQ6 560 aa17.12■□□□□ 0.33
NUP54-217ENST00000514987 DIS3L2Q8IYB7 885 aaKnown RBP17.12■□□□□ 0.33
NUP54-217ENST00000514987 SDR42E1Q8WUS8 393 aa17.12■□□□□ 0.33
NUP54-217ENST00000514987 CELF1Q92879 486 aaKnown RBP17.12■□□□□ 0.33
NUP54-217ENST00000514987 ZSCAN10Q96SZ4 725 aaPredicted RBP17.12■□□□□ 0.33
NUP54-217ENST00000514987 CRNKL1Q9BZJ0 848 aaKnown RBP17.12■□□□□ 0.33
NUP54-217ENST00000514987 TUBE1Q9UJT0 475 aa17.12■□□□□ 0.33
NUP54-217ENST00000514987 MYH13Q9UKX3 1938 aa17.12■□□□□ 0.33
NUP54-217ENST00000514987 MAST2Q6P0Q8 1798 aa17.12■□□□□ 0.33
NUP54-217ENST00000514987 DUOX1Q9NRD9 1551 aa17.12■□□□□ 0.33
NUP54-217ENST00000514987 IKBKBO14920 756 aa17.11■□□□□ 0.33
NUP54-217ENST00000514987 SHC4Q6S5L8 630 aa17.11■□□□□ 0.33
NUP54-217ENST00000514987 BICDL1Q6ZP65 573 aa17.11■□□□□ 0.33
NUP54-217ENST00000514987 ZNF579Q8NAF0 562 aaKnown RBP17.11■□□□□ 0.33
NUP54-217ENST00000514987 ZKSCAN3Q9BRR0 538 aa17.11■□□□□ 0.33
NUP54-217ENST00000514987 ATP8A2Q9NTI2 1148 aa17.11■□□□□ 0.33
NUP54-217ENST00000514987 FAM13BQ9NYF5 915 aa17.11■□□□□ 0.33
NUP54-217ENST00000514987 RTCBQ9Y3I0 505 aaKnown RBP17.11■□□□□ 0.33
NUP54-217ENST00000514987 BTAF1O14981 1849 aa17.11■□□□□ 0.33
NUP54-217ENST00000514987 DLEC1Q9Y238 1755 aa17.11■□□□□ 0.33
NUP54-217ENST00000514987 MROH7-TTC4A0A0A0MT08 1334 aa17.11■□□□□ 0.33
NUP54-217ENST00000514987 ORC4O43929 436 aa17.11■□□□□ 0.33
NUP54-217ENST00000514987 DDAH1O94760 285 aa17.11■□□□□ 0.33
NUP54-217ENST00000514987 PIP4K2BP78356 416 aa17.11■□□□□ 0.33
NUP54-217ENST00000514987 FNBP4Q8N3X1 1017 aaPredicted RBP17.11■□□□□ 0.33
NUP54-217ENST00000514987 NUP133Q8WUM0 1156 aa17.11■□□□□ 0.33
NUP54-217ENST00000514987 GTF2F1P35269 517 aaKnown RBP eCLIP17.1■□□□□ 0.33
NUP54-217ENST00000514987 HSP90AA2PQ14568 343 aaPredicted RBP17.1■□□□□ 0.33
NUP54-217ENST00000514987 DPCR1Q3MIW9 517 aa17.1■□□□□ 0.33
NUP54-217ENST00000514987 IFIT1BQ5T764 474 aaKnown RBP17.1■□□□□ 0.33
NUP54-217ENST00000514987 NSUN4Q96CB9 384 aaKnown RBP17.1■□□□□ 0.33
NUP54-217ENST00000514987 NRBP1Q9UHY1 535 aa17.1■□□□□ 0.33
NUP54-217ENST00000514987 BTBD18B2RXH4 712 aa17.09■□□□□ 0.33
NUP54-217ENST00000514987 PRPF3O43395 683 aaKnown RBP17.09■□□□□ 0.33
NUP54-217ENST00000514987 BMP15O95972 392 aa17.09■□□□□ 0.33
NUP54-217ENST00000514987 SBK1Q52WX2 424 aa17.09■□□□□ 0.33
NUP54-217ENST00000514987 LRRC8AQ8IWT6 810 aa17.09■□□□□ 0.33
NUP54-217ENST00000514987 C17orf53Q8N3J3 647 aaPredicted RBP17.09■□□□□ 0.33
NUP54-217ENST00000514987 ENAHQ8N8S7 591 aaPredicted RBP17.09■□□□□ 0.33
NUP54-217ENST00000514987 C8orf37Q96NL8 207 aa17.09■□□□□ 0.33
NUP54-217ENST00000514987 ARPP21Q9UBL0 812 aaPredicted RBP17.09■□□□□ 0.33
NUP54-217ENST00000514987 KCNH3Q9ULD8 1083 aa17.09■□□□□ 0.33
NUP54-217ENST00000514987 MYH6P13533 1939 aa17.09■□□□□ 0.33
NUP54-217ENST00000514987 TAF1P21675 1872 aa17.09■□□□□ 0.33
NUP54-217ENST00000514987 CCDC88AQ3V6T2 1871 aa17.09■□□□□ 0.33
NUP54-217ENST00000514987 KIAA1551Q9HCM1 1747 aa17.08■□□□□ 0.33
NUP54-217ENST00000514987 THSD7AQ9UPZ6 1657 aa17.08■□□□□ 0.32
NUP54-217ENST00000514987 GNPATO15228 680 aa17.08■□□□□ 0.32
NUP54-217ENST00000514987 PTPREP23469 700 aa17.08■□□□□ 0.32
NUP54-217ENST00000514987 DYNLL1P63167 89 aaKnown RBP17.08■□□□□ 0.32
NUP54-217ENST00000514987 KANK3Q6NY19 840 aa17.08■□□□□ 0.32
NUP54-217ENST00000514987 CTR9Q6PD62 1173 aa17.08■□□□□ 0.32
NUP54-217ENST00000514987 KRBA2Q6ZNG9 492 aa17.08■□□□□ 0.32
NUP54-217ENST00000514987 CACTINQ8WUQ7 758 aaKnown RBP17.08■□□□□ 0.32
NUP54-217ENST00000514987 CCDC34Q96HJ3 373 aa17.08■□□□□ 0.32
NUP54-217ENST00000514987 CCNL1Q9UK58 526 aaPredicted RBP17.08■□□□□ 0.32
NUP54-217ENST00000514987 LAMB1P07942 1786 aa17.08■□□□□ 0.32
NUP54-217ENST00000514987 GUCY1A2P33402 732 aa17.07■□□□□ 0.32
NUP54-217ENST00000514987 MECOMQ03112 1051 aa17.07■□□□□ 0.32
NUP54-217ENST00000514987 OLFM4Q6UX06 510 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms