RNA–Protein interactions for RNA: ENST00000514660.1

NEDD9-215, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 473 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-215ENST00000514660 SPINK5Q9NQ38 1064 aaPredicted RBP13.33□□□□□ -0.28
NEDD9-215ENST00000514660 ATAD5Q96QE3 1844 aa13.33□□□□□ -0.28
NEDD9-215ENST00000514660 MAST3O60307 1309 aa13.33□□□□□ -0.28
NEDD9-215ENST00000514660 TMEM265A0A087WTH1 108 aa13.32□□□□□ -0.28
NEDD9-215ENST00000514660 PDE8BO95263 885 aa13.32□□□□□ -0.28
NEDD9-215ENST00000514660 GRIN2CQ14957 1233 aa13.32□□□□□ -0.28
NEDD9-215ENST00000514660 LBHD1Q9BQE6 289 aaPredicted RBP13.32□□□□□ -0.28
NEDD9-215ENST00000514660 SENP6Q9GZR1 1112 aaPredicted RBP13.32□□□□□ -0.28
NEDD9-215ENST00000514660 MORF4L1Q9UBU8 362 aa13.32□□□□□ -0.28
NEDD9-215ENST00000514660 MROH5Q6ZUA9 1318 aa13.32□□□□□ -0.28
NEDD9-215ENST00000514660 CTNND1O60716 968 aaKnown RBP13.31□□□□□ -0.28
NEDD9-215ENST00000514660 EPHB4P54760 987 aa13.31□□□□□ -0.28
NEDD9-215ENST00000514660 CALD1Q05682 793 aaKnown RBP13.31□□□□□ -0.28
NEDD9-215ENST00000514660 MAP3K12Q12852 859 aa13.31□□□□□ -0.28
NEDD9-215ENST00000514660 SPP2Q13103 211 aa13.31□□□□□ -0.28
NEDD9-215ENST00000514660 Q3C1V9 767 aa13.31□□□□□ -0.28
NEDD9-215ENST00000514660 CAVIN4Q5BKX8 364 aa13.31□□□□□ -0.28
NEDD9-215ENST00000514660 SH3RF1Q7Z6J0 888 aa13.31□□□□□ -0.28
NEDD9-215ENST00000514660 ANKRD44Q8N8A2 993 aa13.31□□□□□ -0.28
NEDD9-215ENST00000514660 FAM122AQ96E09 287 aa13.31□□□□□ -0.28
NEDD9-215ENST00000514660 IDI2Q9BXS1 227 aa13.31□□□□□ -0.28
NEDD9-215ENST00000514660 FLRT1Q9NZU1 646 aa13.31□□□□□ -0.28
NEDD9-215ENST00000514660 NCOR1O75376 2440 aa13.3□□□□□ -0.28
NEDD9-215ENST00000514660 NBPF7P0C2Y1 421 aaPredicted RBP13.3□□□□□ -0.28
NEDD9-215ENST00000514660 XRCC5P13010 732 aaKnown RBP13.3□□□□□ -0.28
NEDD9-215ENST00000514660 ITGB8P26012 769 aa13.3□□□□□ -0.28
NEDD9-215ENST00000514660 GCLCP48506 637 aaPredicted RBP13.3□□□□□ -0.28
NEDD9-215ENST00000514660 HMGCS2P54868 508 aa13.3□□□□□ -0.28
NEDD9-215ENST00000514660 RTP1P59025 263 aa13.3□□□□□ -0.28
NEDD9-215ENST00000514660 SMAD3P84022 425 aaKnown RBP13.3□□□□□ -0.28
NEDD9-215ENST00000514660 METTL24Q5JXM2 366 aa13.3□□□□□ -0.28
NEDD9-215ENST00000514660 BADQ92934 168 aa13.3□□□□□ -0.28
NEDD9-215ENST00000514660 PORCNQ9H237 461 aa13.3□□□□□ -0.28
NEDD9-215ENST00000514660 TCF20Q9UGU0 1960 aaKnown RBP13.29□□□□□ -0.28
NEDD9-215ENST00000514660 ENTPD3O75355 529 aa13.29□□□□□ -0.28
NEDD9-215ENST00000514660 VAMP4O75379 141 aa13.29□□□□□ -0.28
NEDD9-215ENST00000514660 JAG1P78504 1218 aa13.29□□□□□ -0.28
NEDD9-215ENST00000514660 MORN1Q5T089 497 aa13.29□□□□□ -0.28
NEDD9-215ENST00000514660 PROCA1Q8NCQ7 364 aaPredicted RBP13.29□□□□□ -0.28
NEDD9-215ENST00000514660 P2RX7Q99572 595 aaKnown RBP13.29□□□□□ -0.28
NEDD9-215ENST00000514660 CHMP4AQ9BY43 222 aa13.29□□□□□ -0.28
NEDD9-215ENST00000514660 RBPJLQ9UBG7 517 aa13.29□□□□□ -0.28
NEDD9-215ENST00000514660 LRRFIP2Q9Y608 721 aaKnown RBP13.29□□□□□ -0.28
NEDD9-215ENST00000514660 MYO9BQ13459 2157 aa13.28□□□□□ -0.28
NEDD9-215ENST00000514660 SIPA1L1O43166 1804 aa13.28□□□□□ -0.28
NEDD9-215ENST00000514660 TRIM43BA6NCK2 446 aa13.28□□□□□ -0.28
NEDD9-215ENST00000514660 RABL6Q3YEC7 729 aaPredicted RBP13.28□□□□□ -0.28
NEDD9-215ENST00000514660 TRPV1Q8NER1 839 aa13.28□□□□□ -0.28
NEDD9-215ENST00000514660 WDR66Q8TBY9 1149 aa13.28□□□□□ -0.28
NEDD9-215ENST00000514660 TRIM43Q96BQ3 446 aaPredicted RBP13.28□□□□□ -0.28
NEDD9-215ENST00000514660 NUDT12Q9BQG2 462 aa13.28□□□□□ -0.28
NEDD9-215ENST00000514660 BICC1Q9H694 974 aaKnown RBP13.28□□□□□ -0.28
NEDD9-215ENST00000514660 PNMA3Q9UL41 463 aa13.28□□□□□ -0.28
NEDD9-215ENST00000514660 ZKSCAN1P17029 563 aaPredicted RBP13.27□□□□□ -0.29
NEDD9-215ENST00000514660 SHROOM1Q2M3G4 852 aaPredicted RBP13.27□□□□□ -0.29
NEDD9-215ENST00000514660 SH3D19Q5HYK7 790 aa13.27□□□□□ -0.29
NEDD9-215ENST00000514660 NECAB3Q96P71 396 aaPredicted RBP13.27□□□□□ -0.29
NEDD9-215ENST00000514660 GAKO14976 1311 aa13.27□□□□□ -0.29
NEDD9-215ENST00000514660 ZSCAN29Q8IWY8 852 aaPredicted RBP13.26□□□□□ -0.29
NEDD9-215ENST00000514660 ZNF280CQ8ND82 737 aa13.26□□□□□ -0.29
NEDD9-215ENST00000514660 ADAMTS19Q8TE59 1207 aa13.26□□□□□ -0.29
NEDD9-215ENST00000514660 ZNF384Q8TF68 577 aa13.26□□□□□ -0.29
NEDD9-215ENST00000514660 KIF16BQ96L93 1317 aa13.26□□□□□ -0.29
NEDD9-215ENST00000514660 PDLIM7Q9NR12 457 aa13.26□□□□□ -0.29
NEDD9-215ENST00000514660 C9orf78Q9NZ63 289 aaPredicted RBP13.26□□□□□ -0.29
NEDD9-215ENST00000514660 ATP11BQ9Y2G3 1177 aa13.26□□□□□ -0.29
NEDD9-215ENST00000514660 UTYO14607 1347 aa13.25□□□□□ -0.29
NEDD9-215ENST00000514660 IGHA2P01877 340 aa13.25□□□□□ -0.29
NEDD9-215ENST00000514660 PICALMQ13492 652 aa13.25□□□□□ -0.29
NEDD9-215ENST00000514660 GPR142Q7Z601 462 aa13.25□□□□□ -0.29
NEDD9-215ENST00000514660 WWC1Q8IX03 1113 aa13.25□□□□□ -0.29
NEDD9-215ENST00000514660 SOCS4Q8WXH5 440 aa13.25□□□□□ -0.29
NEDD9-215ENST00000514660 NDUFB9Q9Y6M9 179 aa13.25□□□□□ -0.29
NEDD9-215ENST00000514660 FANCIQ9NVI1 1328 aa13.24□□□□□ -0.29
NEDD9-215ENST00000514660 TBC1D12O60347 775 aa13.24□□□□□ -0.29
NEDD9-215ENST00000514660 ALDH1L1O75891 902 aa13.24□□□□□ -0.29
NEDD9-215ENST00000514660 LDHBP07195 334 aaKnown RBP13.24□□□□□ -0.29
NEDD9-215ENST00000514660 RFX5P48382 616 aaPredicted RBP13.24□□□□□ -0.29
NEDD9-215ENST00000514660 RHBDL3P58872 404 aa13.24□□□□□ -0.29
NEDD9-215ENST00000514660 HERVK_113P62684 666 aa13.24□□□□□ -0.29
NEDD9-215ENST00000514660 PUM3Q15397 648 aaKnown RBP13.24□□□□□ -0.29
NEDD9-215ENST00000514660 TRIM60Q495X7 471 aa13.24□□□□□ -0.29
NEDD9-215ENST00000514660 GJC2Q5T442 439 aaPredicted RBP13.24□□□□□ -0.29
NEDD9-215ENST00000514660 SLC39A5Q6ZMH5 540 aa13.24□□□□□ -0.29
NEDD9-215ENST00000514660 PPM1EQ8WY54 764 aa13.24□□□□□ -0.29
NEDD9-215ENST00000514660 ASB2Q96Q27 587 aa13.24□□□□□ -0.29
NEDD9-215ENST00000514660 PRDM5Q9NQX1 630 aaPredicted RBP13.24□□□□□ -0.29
NEDD9-215ENST00000514660 DDX20Q9UHI6 824 aaKnown RBP13.24□□□□□ -0.29
NEDD9-215ENST00000514660 SYNGAP1Q96PV0 1343 aa13.23□□□□□ -0.29
NEDD9-215ENST00000514660 SALL1Q9NSC2 1324 aa13.23□□□□□ -0.29
NEDD9-215ENST00000514660 CNMDO75829 334 aa13.23□□□□□ -0.29
NEDD9-215ENST00000514660 IFIT1P09914 478 aaKnown RBP13.23□□□□□ -0.29
NEDD9-215ENST00000514660 HOXA7P31268 230 aaPredicted RBP13.23□□□□□ -0.29
NEDD9-215ENST00000514660 CAP2P40123 477 aa13.23□□□□□ -0.29
NEDD9-215ENST00000514660 PHKA1P46020 1223 aa13.23□□□□□ -0.29
NEDD9-215ENST00000514660 MTMR2Q13614 643 aa13.23□□□□□ -0.29
NEDD9-215ENST00000514660 SNX17Q15036 470 aa13.23□□□□□ -0.29
NEDD9-215ENST00000514660 ANO1Q5XXA6 986 aa13.23□□□□□ -0.29
NEDD9-215ENST00000514660 ATG9AQ7Z3C6 839 aa13.23□□□□□ -0.29
NEDD9-215ENST00000514660 GPRC5AQ8NFJ5 357 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms