RNA–Protein interactions for RNA: ENST00000512656.1

USP46-208, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 3

Gene USP46, Length 467 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-208ENST00000512656 CSF1RP07333 972 aa9.11□□□□□ -0.95
USP46-208ENST00000512656 KIF23Q02241 960 aaPredicted RBP9.11□□□□□ -0.95
USP46-208ENST00000512656 SKIV2LQ15477 1246 aaKnown RBP9.11□□□□□ -0.95
USP46-208ENST00000512656 SH3D19Q5HYK7 790 aa9.11□□□□□ -0.95
USP46-208ENST00000512656 DACT2Q5SW24 774 aa9.11□□□□□ -0.95
USP46-208ENST00000512656 TTLL5Q6EMB2 1281 aa9.11□□□□□ -0.95
USP46-208ENST00000512656 SH3RF1Q7Z6J0 888 aa9.11□□□□□ -0.95
USP46-208ENST00000512656 NPAS3Q8IXF0 933 aa9.11□□□□□ -0.95
USP46-208ENST00000512656 POLR3EQ9NVU0 708 aa9.11□□□□□ -0.95
USP46-208ENST00000512656 HDAC9Q9UKV0 1011 aa9.11□□□□□ -0.95
USP46-208ENST00000512656 SCN9AQ15858 1988 aa9.11□□□□□ -0.95
USP46-208ENST00000512656 ASTN2O75129 1339 aaPredicted RBP9.1□□□□□ -0.95
USP46-208ENST00000512656 WIPF1O43516 503 aa9.1□□□□□ -0.95
USP46-208ENST00000512656 CASP7P55210 303 aa9.1□□□□□ -0.95
USP46-208ENST00000512656 EXOSC9Q06265 439 aaKnown RBP9.1□□□□□ -0.95
USP46-208ENST00000512656 IFIT5Q13325 482 aaKnown RBP9.1□□□□□ -0.95
USP46-208ENST00000512656 AGERQ15109 404 aa9.1□□□□□ -0.95
USP46-208ENST00000512656 ZIC5Q96T25 663 aa9.1□□□□□ -0.95
USP46-208ENST00000512656 C1QTNF2Q9BXJ5 285 aa9.1□□□□□ -0.95
USP46-208ENST00000512656 KLF16Q9BXK1 252 aaPredicted RBP9.1□□□□□ -0.95
USP46-208ENST00000512656 MCOLN1Q9GZU1 580 aa9.1□□□□□ -0.95
USP46-208ENST00000512656 KDM4CQ9H3R0 1056 aa9.1□□□□□ -0.95
USP46-208ENST00000512656 CHMP3Q9Y3E7 222 aa9.1□□□□□ -0.95
USP46-208ENST00000512656 WNT10BO00744 389 aa9.09□□□□□ -0.95
USP46-208ENST00000512656 TIMP2P16035 220 aa9.09□□□□□ -0.95
USP46-208ENST00000512656 CHRNDQ07001 517 aa9.09□□□□□ -0.95
USP46-208ENST00000512656 DGKZQ13574 1117 aa9.09□□□□□ -0.95
USP46-208ENST00000512656 NBPF9Q3BBW0 867 aa9.09□□□□□ -0.95
USP46-208ENST00000512656 C4orf48Q5BLP8 95 aa9.09□□□□□ -0.95
USP46-208ENST00000512656 SH3BP5LQ7L8J4 393 aa9.09□□□□□ -0.95
USP46-208ENST00000512656 APOBEC3FQ8IUX4 373 aaKnown RBP9.09□□□□□ -0.95
USP46-208ENST00000512656 TRMT44Q8IYL2 757 aaKnown RBP9.09□□□□□ -0.95
USP46-208ENST00000512656 RNF186Q9NXI6 227 aa9.09□□□□□ -0.95
USP46-208ENST00000512656 MAP4K5Q9Y4K4 846 aa9.09□□□□□ -0.95
USP46-208ENST00000512656 POLR2AP24928 1970 aaKnown RBP9.09□□□□□ -0.95
USP46-208ENST00000512656 MYH3P11055 1940 aa9.09□□□□□ -0.95
USP46-208ENST00000512656 WTIPA6NIX2 430 aaPredicted RBP9.08□□□□□ -0.96
USP46-208ENST00000512656 TRPA1O75762 1119 aa9.08□□□□□ -0.96
USP46-208ENST00000512656 BMP1P13497 986 aa9.08□□□□□ -0.96
USP46-208ENST00000512656 WDR4P57081 412 aaKnown RBP9.08□□□□□ -0.96
USP46-208ENST00000512656 GTF2IP78347 998 aa9.08□□□□□ -0.96
USP46-208ENST00000512656 CCDC57Q2TAC2 916 aa9.08□□□□□ -0.96
USP46-208ENST00000512656 TAF7LQ5H9L4 462 aa9.08□□□□□ -0.96
USP46-208ENST00000512656 BEND3Q5T5X7 828 aa9.08□□□□□ -0.96
USP46-208ENST00000512656 PPP2R2DQ66LE6 453 aa9.08□□□□□ -0.96
USP46-208ENST00000512656 C15orf52Q6ZUT6 534 aaKnown RBP9.08□□□□□ -0.96
USP46-208ENST00000512656 ZNF804AQ7Z570 1209 aa9.08□□□□□ -0.96
USP46-208ENST00000512656 TXNRD3Q86VQ6 643 aa9.08□□□□□ -0.96
USP46-208ENST00000512656 RASAL3Q86YV0 1011 aa9.08□□□□□ -0.96
USP46-208ENST00000512656 CSRNP1Q96S65 589 aa9.08□□□□□ -0.96
USP46-208ENST00000512656 MXD3Q9BW11 206 aa9.08□□□□□ -0.96
USP46-208ENST00000512656 CD209Q9NNX6 404 aa9.08□□□□□ -0.96
USP46-208ENST00000512656 C9orf78Q9NZ63 289 aaPredicted RBP9.08□□□□□ -0.96
USP46-208ENST00000512656 CACNA1FO60840 1977 aa9.08□□□□□ -0.96
USP46-208ENST00000512656 PSME4Q14997 1843 aa9.08□□□□□ -0.96
USP46-208ENST00000512656 F6X3S4 739 aa9.07□□□□□ -0.96
USP46-208ENST00000512656 UBE2Q2LH0YL09 131 aa9.07□□□□□ -0.96
USP46-208ENST00000512656 GRM8O00222 908 aa9.07□□□□□ -0.96
USP46-208ENST00000512656 ALDH1L1O75891 902 aa9.07□□□□□ -0.96
USP46-208ENST00000512656 GRM5P41594 1212 aa9.07□□□□□ -0.96
USP46-208ENST00000512656 FOXO4P98177 505 aa9.07□□□□□ -0.96
USP46-208ENST00000512656 MLLT1Q03111 559 aaPredicted RBP9.07□□□□□ -0.96
USP46-208ENST00000512656 DLGAP5Q15398 846 aa9.07□□□□□ -0.96
USP46-208ENST00000512656 MRPL14Q6P1L8 145 aaKnown RBP9.07□□□□□ -0.96
USP46-208ENST00000512656 LMBR1LQ6UX01 489 aa9.07□□□□□ -0.96
USP46-208ENST00000512656 LDHAL6AQ6ZMR3 332 aa9.07□□□□□ -0.96
USP46-208ENST00000512656 ARMC9Q7Z3E5 817 aa9.07□□□□□ -0.96
USP46-208ENST00000512656 KIAA0825Q8IV33 1275 aa9.07□□□□□ -0.96
USP46-208ENST00000512656 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.07□□□□□ -0.96
USP46-208ENST00000512656 CNNM1Q9NRU3 951 aa9.07□□□□□ -0.96
USP46-208ENST00000512656 PAPPA2Q9BXP8 1791 aa9.07□□□□□ -0.96
USP46-208ENST00000512656 CASP8AP2Q9UKL3 1982 aa9.06□□□□□ -0.96
USP46-208ENST00000512656 MYO1BO43795 1136 aa9.06□□□□□ -0.96
USP46-208ENST00000512656 TAF5LO75529 589 aa9.06□□□□□ -0.96
USP46-208ENST00000512656 SASH1O94885 1247 aa9.06□□□□□ -0.96
USP46-208ENST00000512656 KLRK1P26718 216 aa9.06□□□□□ -0.96
USP46-208ENST00000512656 RGS19P49795 217 aa9.06□□□□□ -0.96
USP46-208ENST00000512656 FKBP1AP62942 108 aaKnown RBP9.06□□□□□ -0.96
USP46-208ENST00000512656 SREBF2Q12772 1141 aa9.06□□□□□ -0.96
USP46-208ENST00000512656 ARID5BQ14865 1188 aa9.06□□□□□ -0.96
USP46-208ENST00000512656 PRAMEF18Q5VWM3 479 aa9.06□□□□□ -0.96
USP46-208ENST00000512656 FAM9BQ8IZU0 186 aa9.06□□□□□ -0.96
USP46-208ENST00000512656 MTMR14Q8NCE2 650 aa9.06□□□□□ -0.96
USP46-208ENST00000512656 SRCIN1Q9C0H9 1055 aa9.06□□□□□ -0.96
USP46-208ENST00000512656 NXF1Q9UBU9 619 aaKnown RBP9.06□□□□□ -0.96
USP46-208ENST00000512656 PPP2R3BQ9Y5P8 575 aa9.06□□□□□ -0.96
USP46-208ENST00000512656 COL1A1P02452 1464 aaPredicted RBP9.05□□□□□ -0.96
USP46-208ENST00000512656 PPP1R12BO60237 982 aaPredicted RBP9.05□□□□□ -0.96
USP46-208ENST00000512656 PLIN1O60240 522 aa9.05□□□□□ -0.96
USP46-208ENST00000512656 IL1R1P14778 569 aa9.05□□□□□ -0.96
USP46-208ENST00000512656 CTDSPL2Q05D32 466 aa9.05□□□□□ -0.96
USP46-208ENST00000512656 PDXDC2PQ6P474 469 aa9.05□□□□□ -0.96
USP46-208ENST00000512656 SLC4A10Q6U841 1118 aa9.05□□□□□ -0.96
USP46-208ENST00000512656 CTU1Q7Z7A3 348 aaKnown RBP9.05□□□□□ -0.96
USP46-208ENST00000512656 ZBED3Q96IU2 234 aaPredicted RBP9.05□□□□□ -0.96
USP46-208ENST00000512656 ZFP42Q96MM3 310 aa9.05□□□□□ -0.96
USP46-208ENST00000512656 SCAF8Q9UPN6 1271 aaKnown RBP9.05□□□□□ -0.96
USP46-208ENST00000512656 SPEF2Q9C093 1822 aa9.05□□□□□ -0.96
USP46-208ENST00000512656 UNCXA6NJT0 531 aa9.04□□□□□ -0.96
USP46-208ENST00000512656 TM4SF4P48230 202 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms