RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 FAM43AQ8N2R8 423 aa15.91■□□□□ 0.14
TCOF1-209ENST00000506630 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.91■□□□□ 0.14
TCOF1-209ENST00000506630 HOOK2Q96ED9 719 aa15.91■□□□□ 0.14
TCOF1-209ENST00000506630 EDC3Q96F86 508 aaKnown RBP15.91■□□□□ 0.14
TCOF1-209ENST00000506630 RWDD1Q9H446 243 aaPredicted RBP15.91■□□□□ 0.14
TCOF1-209ENST00000506630 DDX4Q9NQI0 724 aaKnown RBP15.91■□□□□ 0.14
TCOF1-209ENST00000506630 ECHDC1Q9NTX5 307 aa15.91■□□□□ 0.14
TCOF1-209ENST00000506630 PAG1Q9NWQ8 432 aa15.91■□□□□ 0.14
TCOF1-209ENST00000506630 MYH8P13535 1937 aa15.9■□□□□ 0.14
TCOF1-209ENST00000506630 TLR2O60603 784 aa15.9■□□□□ 0.14
TCOF1-209ENST00000506630 ENTPD3O75355 529 aa15.9■□□□□ 0.14
TCOF1-209ENST00000506630 GNRH1P01148 92 aa15.9■□□□□ 0.14
TCOF1-209ENST00000506630 CETPP11597 493 aa15.9■□□□□ 0.14
TCOF1-209ENST00000506630 ANKRD45Q5TZF3 282 aa15.9■□□□□ 0.14
TCOF1-209ENST00000506630 DCAF15Q66K64 600 aa15.9■□□□□ 0.14
TCOF1-209ENST00000506630 ZSCAN29Q8IWY8 852 aaPredicted RBP15.9■□□□□ 0.14
TCOF1-209ENST00000506630 SH3RF3Q8TEJ3 882 aaPredicted RBP15.9■□□□□ 0.14
TCOF1-209ENST00000506630 HAUS7Q99871 368 aa15.9■□□□□ 0.14
TCOF1-209ENST00000506630 ZCCHC17Q9NP64 241 aaKnown RBP15.9■□□□□ 0.14
TCOF1-209ENST00000506630 BAZ2AQ9UIF9 1905 aaKnown RBP15.9■□□□□ 0.14
TCOF1-209ENST00000506630 SPDYE5A6NIY4 337 aa15.89■□□□□ 0.13
TCOF1-209ENST00000506630 H0YGN5 161 aa15.89■□□□□ 0.13
TCOF1-209ENST00000506630 MAP4K4O95819 1239 aaPredicted RBP15.89■□□□□ 0.13
TCOF1-209ENST00000506630 PLCG2P16885 1265 aa15.89■□□□□ 0.13
TCOF1-209ENST00000506630 PRMT2P55345 433 aa15.89■□□□□ 0.13
TCOF1-209ENST00000506630 MIGA2Q7L4E1 593 aa15.89■□□□□ 0.13
TCOF1-209ENST00000506630 ERO1BQ86YB8 467 aa15.89■□□□□ 0.13
TCOF1-209ENST00000506630 SH3TC2Q8TF17 1288 aa15.89■□□□□ 0.13
TCOF1-209ENST00000506630 ZKSCAN4Q969J2 545 aaPredicted RBP15.89■□□□□ 0.13
TCOF1-209ENST00000506630 HTTP42858 3142 aa15.88■□□□□ 0.13
TCOF1-209ENST00000506630 PDE6AP16499 860 aa15.88■□□□□ 0.13
TCOF1-209ENST00000506630 DYNLL1P63167 89 aaKnown RBP15.88■□□□□ 0.13
TCOF1-209ENST00000506630 LACTBP83111 547 aaPredicted RBP15.88■□□□□ 0.13
TCOF1-209ENST00000506630 SNAPC2Q13487 334 aa15.88■□□□□ 0.13
TCOF1-209ENST00000506630 MIGA1Q8NAN2 632 aa15.88■□□□□ 0.13
TCOF1-209ENST00000506630 ZNF341Q9BYN7 854 aa15.88■□□□□ 0.13
TCOF1-209ENST00000506630 SNCAIPQ9Y6H5 919 aa15.88■□□□□ 0.13
TCOF1-209ENST00000506630 DDX60LQ5H9U9 1706 aaKnown RBP15.88■□□□□ 0.13
TCOF1-209ENST00000506630 PPP4CP60510 307 aa15.87■□□□□ 0.13
TCOF1-209ENST00000506630 SLC9C2Q5TAH2 1124 aa15.87■□□□□ 0.13
TCOF1-209ENST00000506630 TMED8Q6PL24 325 aaPredicted RBP15.87■□□□□ 0.13
TCOF1-209ENST00000506630 OTUD7AQ8TE49 926 aaPredicted RBP15.87■□□□□ 0.13
TCOF1-209ENST00000506630 WRNIP1Q96S55 665 aa15.87■□□□□ 0.13
TCOF1-209ENST00000506630 ARHGAP39Q9C0H5 1083 aa15.87■□□□□ 0.13
TCOF1-209ENST00000506630 TTC41PQ6P2S7 1318 aa15.87■□□□□ 0.13
TCOF1-209ENST00000506630 ZNF532Q9HCE3 1301 aa15.87■□□□□ 0.13
TCOF1-209ENST00000506630 COL2A1P02458 1487 aaPredicted RBP15.86■□□□□ 0.13
TCOF1-209ENST00000506630 CENPFP49454 3210 aa15.86■□□□□ 0.13
TCOF1-209ENST00000506630 DDTLA6NHG4 134 aaPredicted RBP15.86■□□□□ 0.13
TCOF1-209ENST00000506630 BTBD19C9JJ37 291 aa15.86■□□□□ 0.13
TCOF1-209ENST00000506630 ERC2O15083 957 aa15.86■□□□□ 0.13
TCOF1-209ENST00000506630 IGHDP01880 384 aa15.86■□□□□ 0.13
TCOF1-209ENST00000506630 MX1P20591 662 aa15.86■□□□□ 0.13
TCOF1-209ENST00000506630 INPP5BP32019 993 aa15.86■□□□□ 0.13
TCOF1-209ENST00000506630 B4GALNT3Q6L9W6 998 aa15.86■□□□□ 0.13
TCOF1-209ENST00000506630 SH3BP5LQ7L8J4 393 aa15.86■□□□□ 0.13
TCOF1-209ENST00000506630 CERS3Q8IU89 383 aa15.86■□□□□ 0.13
TCOF1-209ENST00000506630 MAPKAPK5Q8IW41 473 aa15.86■□□□□ 0.13
TCOF1-209ENST00000506630 TGFBRAP1Q8WUH2 860 aa15.86■□□□□ 0.13
TCOF1-209ENST00000506630 DPF3Q92784 378 aa15.86■□□□□ 0.13
TCOF1-209ENST00000506630 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.86■□□□□ 0.13
TCOF1-209ENST00000506630 OSBPL5Q9H0X9 879 aaPredicted RBP15.86■□□□□ 0.13
TCOF1-209ENST00000506630 PTPRFP10586 1907 aa15.86■□□□□ 0.13
TCOF1-209ENST00000506630 ZSWIM8A7E2V4 1837 aa15.85■□□□□ 0.13
TCOF1-209ENST00000506630 PHIPQ8WWQ0 1821 aa15.85■□□□□ 0.13
TCOF1-209ENST00000506630 IRF6O14896 467 aa15.85■□□□□ 0.13
TCOF1-209ENST00000506630 HOXD10P28358 340 aa15.85■□□□□ 0.13
TCOF1-209ENST00000506630 CHRDL2Q6WN34 429 aa15.85■□□□□ 0.13
TCOF1-209ENST00000506630 SMC5Q8IY18 1101 aa15.85■□□□□ 0.13
TCOF1-209ENST00000506630 NKX2-3Q8TAU0 364 aa15.85■□□□□ 0.13
TCOF1-209ENST00000506630 LNPKQ9C0E8 428 aa15.85■□□□□ 0.13
TCOF1-209ENST00000506630 MKI67P46013 3256 aaKnown RBP15.85■□□□□ 0.13
TCOF1-209ENST00000506630 FLT1P17948 1338 aa15.85■□□□□ 0.13
TCOF1-209ENST00000506630 ATRNL1Q5VV63 1379 aa15.85■□□□□ 0.13
TCOF1-209ENST00000506630 MAGEB6P1A0A0J9YX57 407 aa15.84■□□□□ 0.13
TCOF1-209ENST00000506630 GLRX3O76003 335 aaKnown RBP15.84■□□□□ 0.13
TCOF1-209ENST00000506630 ADD2P35612 726 aa15.84■□□□□ 0.13
TCOF1-209ENST00000506630 USP5P45974 858 aa15.84■□□□□ 0.13
TCOF1-209ENST00000506630 PPIL2Q13356 520 aa15.84■□□□□ 0.13
TCOF1-209ENST00000506630 ZSCAN25Q6NSZ9 544 aa15.84■□□□□ 0.13
TCOF1-209ENST00000506630 PI4K2BQ8TCG2 481 aa15.84■□□□□ 0.13
TCOF1-209ENST00000506630 SALL3Q9BXA9 1300 aa15.84■□□□□ 0.13
TCOF1-209ENST00000506630 TCRBV5S4A2TA0A5A2 114 aa15.83■□□□□ 0.12
TCOF1-209ENST00000506630 ECM2O94769 699 aaPredicted RBP15.83■□□□□ 0.12
TCOF1-209ENST00000506630 SLFNL1Q499Z3 407 aa15.83■□□□□ 0.12
TCOF1-209ENST00000506630 C17orf99Q6UX52 265 aa15.83■□□□□ 0.12
TCOF1-209ENST00000506630 RAET1EQ8TD07 263 aa15.83■□□□□ 0.12
TCOF1-209ENST00000506630 HTATIP2Q9BUP3 242 aa15.83■□□□□ 0.12
TCOF1-209ENST00000506630 SRRDQ9UH36 339 aa15.83■□□□□ 0.12
TCOF1-209ENST00000506630 BRCA2P51587 3418 aa15.82■□□□□ 0.12
TCOF1-209ENST00000506630 FMNL1O95466 1100 aaPredicted RBP15.82■□□□□ 0.12
TCOF1-209ENST00000506630 PSMC4P43686 418 aa15.82■□□□□ 0.12
TCOF1-209ENST00000506630 PPATQ06203 517 aa15.82■□□□□ 0.12
TCOF1-209ENST00000506630 MTFR1Q15390 333 aa15.82■□□□□ 0.12
TCOF1-209ENST00000506630 KBTBD3Q8NAB2 608 aa15.82■□□□□ 0.12
TCOF1-209ENST00000506630 RIOK1Q9BRS2 568 aaKnown RBP15.82■□□□□ 0.12
TCOF1-209ENST00000506630 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.82■□□□□ 0.12
TCOF1-209ENST00000506630 SAP30BPQ9UHR5 308 aaKnown RBP15.82■□□□□ 0.12
TCOF1-209ENST00000506630 CPA4Q9UI42 421 aa15.82■□□□□ 0.12
TCOF1-209ENST00000506630 FAM196BA6NMK8 535 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms