RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 TNFAIP1Q13829 316 aa8.55□□□□□ -1.04
NUP54-204ENST00000506098 AKNAD1Q5T1N1 836 aa8.55□□□□□ -1.04
NUP54-204ENST00000506098 SH3BP5LQ7L8J4 393 aa8.55□□□□□ -1.04
NUP54-204ENST00000506098 PNMA8AQ86V59 439 aaPredicted RBP8.55□□□□□ -1.04
NUP54-204ENST00000506098 APOBEC3FQ8IUX4 373 aaKnown RBP8.55□□□□□ -1.04
NUP54-204ENST00000506098 ZFPM1Q8IX07 1006 aa8.55□□□□□ -1.04
NUP54-204ENST00000506098 AMOTL1Q8IY63 956 aa8.55□□□□□ -1.04
NUP54-204ENST00000506098 EHD4Q9H223 541 aa8.55□□□□□ -1.04
NUP54-204ENST00000506098 TAF1DQ9H5J8 278 aaPredicted RBP8.55□□□□□ -1.04
NUP54-204ENST00000506098 TSHZ2Q9NRE2 1034 aa8.55□□□□□ -1.04
NUP54-204ENST00000506098 TACC3Q9Y6A5 838 aa8.55□□□□□ -1.04
NUP54-204ENST00000506098 TAF6LQ9Y6J9 622 aa8.55□□□□□ -1.04
NUP54-204ENST00000506098 ASTN2O75129 1339 aaPredicted RBP8.54□□□□□ -1.04
NUP54-204ENST00000506098 CYP2D7A0A087X1C5 515 aa8.54□□□□□ -1.04
NUP54-204ENST00000506098 DDTLA6NHG4 134 aaPredicted RBP8.54□□□□□ -1.04
NUP54-204ENST00000506098 MINDY4BA8MYZ0 360 aa8.54□□□□□ -1.04
NUP54-204ENST00000506098 TCP10L2B9ZVM9 353 aa8.54□□□□□ -1.04
NUP54-204ENST00000506098 ORC4O43929 436 aa8.54□□□□□ -1.04
NUP54-204ENST00000506098 TBC1D12O60347 775 aa8.54□□□□□ -1.04
NUP54-204ENST00000506098 MYCNP04198 464 aaPredicted RBP8.54□□□□□ -1.04
NUP54-204ENST00000506098 POLR3DP05423 398 aaPredicted RBP8.54□□□□□ -1.04
NUP54-204ENST00000506098 PSMA5P28066 241 aa8.54□□□□□ -1.04
NUP54-204ENST00000506098 HAND2P61296 217 aa8.54□□□□□ -1.04
NUP54-204ENST00000506098 CTDSPL2Q05D32 466 aa8.54□□□□□ -1.04
NUP54-204ENST00000506098 ADCK5Q3MIX3 580 aa8.54□□□□□ -1.04
NUP54-204ENST00000506098 STOX1Q6ZVD7 989 aa8.54□□□□□ -1.04
NUP54-204ENST00000506098 C16orf86Q6ZW13 317 aa8.54□□□□□ -1.04
NUP54-204ENST00000506098 FOXP4Q8IVH2 680 aaPredicted RBP8.54□□□□□ -1.04
NUP54-204ENST00000506098 TEPSINQ96N21 525 aa8.54□□□□□ -1.04
NUP54-204ENST00000506098 RNF41Q9H4P4 317 aaPredicted RBP8.54□□□□□ -1.04
NUP54-204ENST00000506098 CNNM2Q9H8M5 875 aa8.54□□□□□ -1.04
NUP54-204ENST00000506098 ZSWIM6Q9HCJ5 1215 aa8.54□□□□□ -1.04
NUP54-204ENST00000506098 PI4KBQ9UBF8 816 aa8.54□□□□□ -1.04
NUP54-204ENST00000506098 SAP30BPQ9UHR5 308 aaKnown RBP8.54□□□□□ -1.04
NUP54-204ENST00000506098 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.54□□□□□ -1.04
NUP54-204ENST00000506098 PPP2R3BQ9Y5P8 575 aa8.54□□□□□ -1.04
NUP54-204ENST00000506098 WDR19Q8NEZ3 1342 aa8.54□□□□□ -1.04
NUP54-204ENST00000506098 SMCHD1A6NHR9 2005 aa8.53□□□□□ -1.04
NUP54-204ENST00000506098 TCHHQ07283 1943 aa8.53□□□□□ -1.04
NUP54-204ENST00000506098 SMIM22K7EJ46 135 aa8.53□□□□□ -1.04
NUP54-204ENST00000506098 HLA-DOAP06340 250 aa8.53□□□□□ -1.04
NUP54-204ENST00000506098 SLC3A2P08195 630 aaKnown RBP8.53□□□□□ -1.04
NUP54-204ENST00000506098 HMGB1P09429 215 aaKnown RBP8.53□□□□□ -1.04
NUP54-204ENST00000506098 CYP2D6P10635 497 aa8.53□□□□□ -1.04
NUP54-204ENST00000506098 VEGFAP15692 232 aaPredicted RBP8.53□□□□□ -1.04
NUP54-204ENST00000506098 EXOSC10Q01780 885 aaKnown RBP8.53□□□□□ -1.04
NUP54-204ENST00000506098 EVX2Q03828 476 aa8.53□□□□□ -1.04
NUP54-204ENST00000506098 PDE4BQ07343 736 aa8.53□□□□□ -1.04
NUP54-204ENST00000506098 TCP10Q12799 353 aa8.53□□□□□ -1.04
NUP54-204ENST00000506098 RASA3Q14644 834 aa8.53□□□□□ -1.04
NUP54-204ENST00000506098 RABEP1Q15276 862 aa8.53□□□□□ -1.04
NUP54-204ENST00000506098 ANGEL2Q5VTE6 544 aaKnown RBP8.53□□□□□ -1.04
NUP54-204ENST00000506098 MFSD6Q6ZSS7 791 aa8.53□□□□□ -1.04
NUP54-204ENST00000506098 RUFY3Q7L099 469 aa8.53□□□□□ -1.04
NUP54-204ENST00000506098 TBC1D10CQ8IV04 446 aa8.53□□□□□ -1.04
NUP54-204ENST00000506098 FBXL16Q8N461 479 aa8.53□□□□□ -1.04
NUP54-204ENST00000506098 NCOA7Q8NI08 942 aa8.53□□□□□ -1.04
NUP54-204ENST00000506098 NEK1Q96PY6 1258 aa8.53□□□□□ -1.04
NUP54-204ENST00000506098 MTA3Q9BTC8 594 aa8.53□□□□□ -1.04
NUP54-204ENST00000506098 KRT23Q9C075 422 aa8.53□□□□□ -1.04
NUP54-204ENST00000506098 ALDH8A1Q9H2A2 487 aaPredicted RBP8.53□□□□□ -1.04
NUP54-204ENST00000506098 VEZTQ9HBM0 779 aa8.53□□□□□ -1.04
NUP54-204ENST00000506098 GGA3Q9NZ52 723 aa8.53□□□□□ -1.04
NUP54-204ENST00000506098 SWAP70Q9UH65 585 aa8.53□□□□□ -1.04
NUP54-204ENST00000506098 HERC5Q9UII4 1024 aaKnown RBP8.53□□□□□ -1.04
NUP54-204ENST00000506098 SERPINB13Q9UIV8 391 aa8.53□□□□□ -1.04
NUP54-204ENST00000506098 COL11A1P12107 1806 aaPredicted RBP8.52□□□□□ -1.04
NUP54-204ENST00000506098 CDK8P49336 464 aa8.52□□□□□ -1.05
NUP54-204ENST00000506098 TRDNQ13061 729 aa8.52□□□□□ -1.05
NUP54-204ENST00000506098 TATDN1Q6P1N9 297 aa8.52□□□□□ -1.05
NUP54-204ENST00000506098 BLOC1S2Q6QNY1 142 aa8.52□□□□□ -1.05
NUP54-204ENST00000506098 MB21D2Q8IYB1 491 aaPredicted RBP8.52□□□□□ -1.05
NUP54-204ENST00000506098 DCPSQ96C86 337 aaKnown RBP8.52□□□□□ -1.05
NUP54-204ENST00000506098 JAKMIP1Q96N16 626 aaKnown RBP8.52□□□□□ -1.05
NUP54-204ENST00000506098 TTC14Q96N46 770 aa8.52□□□□□ -1.05
NUP54-204ENST00000506098 AGXT2Q9BYV1 514 aa8.52□□□□□ -1.05
NUP54-204ENST00000506098 TMEM39BQ9GZU3 492 aa8.52□□□□□ -1.05
NUP54-204ENST00000506098 DEFB129Q9H1M3 183 aa8.52□□□□□ -1.05
NUP54-204ENST00000506098 RRAGCQ9HB90 399 aa8.52□□□□□ -1.05
NUP54-204ENST00000506098 ZNF287Q9HBT7 754 aa8.52□□□□□ -1.05
NUP54-204ENST00000506098 RLFQ13129 1914 aa8.52□□□□□ -1.05
NUP54-204ENST00000506098 MYH15Q9Y2K3 1946 aa8.52□□□□□ -1.05
NUP54-204ENST00000506098 NEDD4P46934 1319 aa8.52□□□□□ -1.05
NUP54-204ENST00000506098 PLIN4Q96Q06 1357 aa8.51□□□□□ -1.05
NUP54-204ENST00000506098 CASTP20810 708 aaKnown RBP8.51□□□□□ -1.05
NUP54-204ENST00000506098 RASA1P20936 1047 aa8.51□□□□□ -1.05
NUP54-204ENST00000506098 RPS6KB1P23443 525 aa8.51□□□□□ -1.05
NUP54-204ENST00000506098 MCM5P33992 734 aa8.51□□□□□ -1.05
NUP54-204ENST00000506098 SHMT1P34896 483 aa8.51□□□□□ -1.05
NUP54-204ENST00000506098 COL9A3Q14050 684 aaPredicted RBP8.51□□□□□ -1.05
NUP54-204ENST00000506098 DHX32Q7L7V1 743 aaKnown RBP8.51□□□□□ -1.05
NUP54-204ENST00000506098 ZSCAN29Q8IWY8 852 aaPredicted RBP8.51□□□□□ -1.05
NUP54-204ENST00000506098 NKX2-3Q8TAU0 364 aa8.51□□□□□ -1.05
NUP54-204ENST00000506098 ESR2Q92731 530 aa8.51□□□□□ -1.05
NUP54-204ENST00000506098 HOOK2Q96ED9 719 aa8.51□□□□□ -1.05
NUP54-204ENST00000506098 DYNLL2Q96FJ2 89 aa8.51□□□□□ -1.05
NUP54-204ENST00000506098 CSRNP1Q96S65 589 aa8.51□□□□□ -1.05
NUP54-204ENST00000506098 DNAJC18Q9H819 358 aa8.51□□□□□ -1.05
NUP54-204ENST00000506098 INCENPQ9NQS7 918 aa8.51□□□□□ -1.05
NUP54-204ENST00000506098 TCP11L1Q9NUJ3 509 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms