RNA–Protein interactions for RNA: ENST00000503338.5

TOPBP1-202, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 3

Gene TOPBP1, Length 618 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-202ENST00000503338 SYT17Q9BSW7 474 aa9.55□□□□□ -0.88
TOPBP1-202ENST00000503338 MXD3Q9BW11 206 aa9.55□□□□□ -0.88
TOPBP1-202ENST00000503338 OSBPL5Q9H0X9 879 aaPredicted RBP9.55□□□□□ -0.88
TOPBP1-202ENST00000503338 MKNK2Q9HBH9 465 aa9.55□□□□□ -0.88
TOPBP1-202ENST00000503338 ZSWIM5Q9P217 1185 aa9.55□□□□□ -0.88
TOPBP1-202ENST00000503338 SWAP70Q9UH65 585 aa9.55□□□□□ -0.88
TOPBP1-202ENST00000503338 SMC3Q9UQE7 1217 aa9.55□□□□□ -0.88
TOPBP1-202ENST00000503338 SCN9AQ15858 1988 aa9.54□□□□□ -0.88
TOPBP1-202ENST00000503338 CCDC196A0A1B0GTZ2 297 aa9.54□□□□□ -0.88
TOPBP1-202ENST00000503338 CCDC69A6NI79 296 aa9.54□□□□□ -0.88
TOPBP1-202ENST00000503338 TSPY2A6NKD2 308 aa9.54□□□□□ -0.88
TOPBP1-202ENST00000503338 RANBP6O60518 1105 aaKnown RBP9.54□□□□□ -0.88
TOPBP1-202ENST00000503338 ENTPD3O75355 529 aa9.54□□□□□ -0.88
TOPBP1-202ENST00000503338 WDHD1O75717 1129 aaPredicted RBP9.54□□□□□ -0.88
TOPBP1-202ENST00000503338 LMNB1P20700 586 aa9.54□□□□□ -0.88
TOPBP1-202ENST00000503338 ANTXR2P58335 489 aa9.54□□□□□ -0.88
TOPBP1-202ENST00000503338 WTAPQ15007 396 aa9.54□□□□□ -0.88
TOPBP1-202ENST00000503338 FKBP1CQ5VVH2 108 aa9.54□□□□□ -0.88
TOPBP1-202ENST00000503338 NFXL1Q6ZNB6 911 aa9.54□□□□□ -0.88
TOPBP1-202ENST00000503338 C16orf86Q6ZW13 317 aa9.54□□□□□ -0.88
TOPBP1-202ENST00000503338 CYB5R4Q7L1T6 521 aa9.54□□□□□ -0.88
TOPBP1-202ENST00000503338 CCDC83Q8IWF9 413 aa9.54□□□□□ -0.88
TOPBP1-202ENST00000503338 ZNF444Q8N0Y2 327 aaPredicted RBP9.54□□□□□ -0.88
TOPBP1-202ENST00000503338 IGDCC4Q8TDY8 1250 aa9.54□□□□□ -0.88
TOPBP1-202ENST00000503338 GTF3C6Q969F1 213 aa9.54□□□□□ -0.88
TOPBP1-202ENST00000503338 EHD4Q9H223 541 aa9.54□□□□□ -0.88
TOPBP1-202ENST00000503338 TCP11L1Q9NUJ3 509 aa9.54□□□□□ -0.88
TOPBP1-202ENST00000503338 COL2A1P02458 1487 aaPredicted RBP9.53□□□□□ -0.88
TOPBP1-202ENST00000503338 KLF18A0A0U1RQI7 1052 aa9.53□□□□□ -0.88
TOPBP1-202ENST00000503338 SPDYE2BA6NHP3 402 aa9.53□□□□□ -0.88
TOPBP1-202ENST00000503338 CDKL5O76039 1030 aa9.53□□□□□ -0.88
TOPBP1-202ENST00000503338 SPDYE6P0CI01 402 aa9.53□□□□□ -0.88
TOPBP1-202ENST00000503338 CALM1P0DP23 149 aa9.53□□□□□ -0.88
TOPBP1-202ENST00000503338 CALM2P0DP24 149 aa9.53□□□□□ -0.88
TOPBP1-202ENST00000503338 CALM3P0DP25 149 aa9.53□□□□□ -0.88
TOPBP1-202ENST00000503338 PDIA3P30101 505 aaKnown RBP9.53□□□□□ -0.88
TOPBP1-202ENST00000503338 APOBRQ0VD83 1088 aa9.53□□□□□ -0.88
TOPBP1-202ENST00000503338 PICALMQ13492 652 aa9.53□□□□□ -0.88
TOPBP1-202ENST00000503338 ARHGAP27Q6ZUM4 889 aa9.53□□□□□ -0.88
TOPBP1-202ENST00000503338 CHST3Q7LGC8 479 aa9.53□□□□□ -0.88
TOPBP1-202ENST00000503338 DGKHQ86XP1 1220 aa9.53□□□□□ -0.88
TOPBP1-202ENST00000503338 RGS22Q8NE09 1264 aa9.53□□□□□ -0.88
TOPBP1-202ENST00000503338 ZSCAN10Q96SZ4 725 aaPredicted RBP9.53□□□□□ -0.88
TOPBP1-202ENST00000503338 LRRC2Q9BYS8 371 aa9.53□□□□□ -0.88
TOPBP1-202ENST00000503338 LY9Q9HBG7 655 aa9.53□□□□□ -0.88
TOPBP1-202ENST00000503338 PI4KBQ9UBF8 816 aa9.53□□□□□ -0.88
TOPBP1-202ENST00000503338 SERPINB13Q9UIV8 391 aa9.53□□□□□ -0.88
TOPBP1-202ENST00000503338 SLC12A7Q9Y666 1083 aa9.53□□□□□ -0.88
TOPBP1-202ENST00000503338 LAMB1P07942 1786 aa9.52□□□□□ -0.88
TOPBP1-202ENST00000503338 CYP2D7A0A087X1C5 515 aa9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 GOLGA8BA8MQT2 603 aa9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 CPLX1O14810 134 aa9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 ZBTB43O43298 467 aa9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 LARGE1O95461 756 aa9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 TSPY3P0CV98 308 aa9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 TSPY8P0CW00 308 aa9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 CDK8P49336 464 aa9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 METAP2P50579 478 aaKnown RBP eCLIP9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 PLCD1P51178 756 aa9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 ZNF280AP59817 542 aaPredicted RBP9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 RASSF7Q02833 373 aa9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 TNFAIP1Q13829 316 aa9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 RAB3GAP1Q15042 981 aa9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 IFIT1BQ5T764 474 aaKnown RBP9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 APOA5Q6Q788 366 aa9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 CATIPQ7Z7H3 387 aa9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 FOXP4Q8IVH2 680 aaPredicted RBP9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 NAV1Q8NEY1 1877 aa9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 CCDC17Q96LX7 622 aa9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 TRIM34Q9BYJ4 488 aa9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 SAP30BPQ9UHR5 308 aaKnown RBP9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 NAP1L2Q9ULW6 460 aaPredicted RBP9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 BAZ2AQ9UIF9 1905 aaKnown RBP9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 TNKSO95271 1327 aa9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 WDR33Q9C0J8 1336 aaKnown RBP9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 ZNF646O15015 1829 aaPredicted RBP9.52□□□□□ -0.89
TOPBP1-202ENST00000503338 COL4A5P29400 1685 aa9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 NID2Q14112 1375 aa9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 ATRNL1Q5VV63 1379 aa9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 H7C1D1 291 aa9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 DDAH1O94760 285 aa9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 CYP2D6P10635 497 aa9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 PTMSP20962 102 aa9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 GJB2P29033 226 aa9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 TNNI2P48788 182 aa9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 GABPAQ06546 454 aa9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 SCRN1Q12765 414 aa9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 STK3Q13188 491 aa9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 COL9A3Q14050 684 aaPredicted RBP9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 SEC23AQ15436 765 aa9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 SPDYE2Q495Y8 402 aa9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 FAM83AQ86UY5 434 aa9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 FAM184AQ8NB25 1140 aa9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 ANKS1AQ92625 1134 aa9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 PRMT6Q96LA8 375 aaPredicted RBP9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 GBP4Q96PP9 640 aa9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 MAP3K14Q99558 947 aa9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 LARP6Q9BRS8 491 aaKnown RBP9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 TDRD3Q9H7E2 651 aaKnown RBP9.51□□□□□ -0.89
TOPBP1-202ENST00000503338 MYOZ2Q9NPC6 264 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms