RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 NLRP12P59046 1061 aa6.16□□□□□ -1.42
USP54-217ENST00000498213 ARHGAP4P98171 946 aa6.16□□□□□ -1.42
USP54-217ENST00000498213 IKBKEQ14164 716 aa6.16□□□□□ -1.42
USP54-217ENST00000498213 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.16□□□□□ -1.42
USP54-217ENST00000498213 DNAJC5GQ8N7S2 189 aa6.16□□□□□ -1.42
USP54-217ENST00000498213 NXPE3Q969Y0 559 aa6.16□□□□□ -1.42
USP54-217ENST00000498213 CITED4Q96RK1 184 aa6.16□□□□□ -1.42
USP54-217ENST00000498213 OSGEPQ9NPF4 335 aa6.16□□□□□ -1.42
USP54-217ENST00000498213 LATS2Q9NRM7 1088 aa6.16□□□□□ -1.42
USP54-217ENST00000498213 DISP2A7MBM2 1401 aa6.16□□□□□ -1.42
USP54-217ENST00000498213 CHD2O14647 1828 aaKnown RBP6.15□□□□□ -1.42
USP54-217ENST00000498213 SLIT2O94813 1529 aa6.15□□□□□ -1.42
USP54-217ENST00000498213 CD97P48960 835 aa6.15□□□□□ -1.42
USP54-217ENST00000498213 C19orf57Q0VDD7 668 aa6.15□□□□□ -1.42
USP54-217ENST00000498213 ADAMTSL4Q6UY14 1074 aa6.15□□□□□ -1.42
USP54-217ENST00000498213 KLHDC7BQ96G42 594 aa6.15□□□□□ -1.42
USP54-217ENST00000498213 SOX13Q9UN79 622 aa6.15□□□□□ -1.42
USP54-217ENST00000498213 RAXQ9Y2V3 346 aa6.15□□□□□ -1.42
USP54-217ENST00000498213 SPHKAPQ2M3C7 1700 aa6.15□□□□□ -1.42
USP54-217ENST00000498213 DCCP43146 1447 aa6.15□□□□□ -1.43
USP54-217ENST00000498213 ADGRL3Q9HAR2 1447 aa6.15□□□□□ -1.43
USP54-217ENST00000498213 NRKQ7Z2Y5 1582 aa6.14□□□□□ -1.43
USP54-217ENST00000498213 SOWAHDA6NJG2 315 aa6.14□□□□□ -1.43
USP54-217ENST00000498213 GSC2O15499 205 aa6.14□□□□□ -1.43
USP54-217ENST00000498213 DDX3YO15523 660 aaKnown RBP6.14□□□□□ -1.43
USP54-217ENST00000498213 SART1O43290 800 aaKnown RBP6.14□□□□□ -1.43
USP54-217ENST00000498213 CPNE3O75131 537 aaKnown RBP6.14□□□□□ -1.43
USP54-217ENST00000498213 WISP1O95388 367 aa6.14□□□□□ -1.43
USP54-217ENST00000498213 TXKP42681 527 aa6.14□□□□□ -1.43
USP54-217ENST00000498213 IRAK1P51617 712 aa6.14□□□□□ -1.43
USP54-217ENST00000498213 Q6ZS46 218 aa6.14□□□□□ -1.43
USP54-217ENST00000498213 UBASH3BQ8TF42 649 aa6.14□□□□□ -1.43
USP54-217ENST00000498213 BHLHE41Q9C0J9 482 aaPredicted RBP6.14□□□□□ -1.43
USP54-217ENST00000498213 LIN7BQ9HAP6 207 aa6.14□□□□□ -1.43
USP54-217ENST00000498213 KCNK4Q9NYG8 393 aa6.14□□□□□ -1.43
USP54-217ENST00000498213 PTPRUQ92729 1446 aa6.14□□□□□ -1.43
USP54-217ENST00000498213 IGLV1-40P01703 118 aa6.13□□□□□ -1.43
USP54-217ENST00000498213 PEAR1Q5VY43 1037 aaPredicted RBP6.13□□□□□ -1.43
USP54-217ENST00000498213 FDX2Q6P4F2 183 aa6.13□□□□□ -1.43
USP54-217ENST00000498213 GALNT12Q8IXK2 581 aa6.13□□□□□ -1.43
USP54-217ENST00000498213 FOXD4L4Q8WXT5 416 aaPredicted RBP6.13□□□□□ -1.43
USP54-217ENST00000498213 UTP4Q969X6 686 aaKnown RBP6.13□□□□□ -1.43
USP54-217ENST00000498213 DMRTB1Q96MA1 342 aa6.13□□□□□ -1.43
USP54-217ENST00000498213 USP26Q9BXU7 913 aa6.13□□□□□ -1.43
USP54-217ENST00000498213 STOML1Q9UBI4 398 aa6.13□□□□□ -1.43
USP54-217ENST00000498213 ADAMTS13Q76LX8 1427 aa6.13□□□□□ -1.43
USP54-217ENST00000498213 RIMS2Q9UQ26 1411 aa6.13□□□□□ -1.43
USP54-217ENST00000498213 C1orf167Q5SNV9 1468 aa6.13□□□□□ -1.43
USP54-217ENST00000498213 LRRIQ1Q96JM4 1722 aa6.13□□□□□ -1.43
USP54-217ENST00000498213 DHX15O43143 795 aaKnown RBP6.12□□□□□ -1.43
USP54-217ENST00000498213 EIF4EBP3O60516 100 aaPredicted RBP6.12□□□□□ -1.43
USP54-217ENST00000498213 COBLO75128 1261 aa6.12□□□□□ -1.43
USP54-217ENST00000498213 TSPY4P0CV99 314 aa6.12□□□□□ -1.43
USP54-217ENST00000498213 TSPY10P0CW01 314 aa6.12□□□□□ -1.43
USP54-217ENST00000498213 HTRA3P83110 453 aa6.12□□□□□ -1.43
USP54-217ENST00000498213 ORC1Q13415 861 aa6.12□□□□□ -1.43
USP54-217ENST00000498213 CHD4Q14839 1912 aa6.12□□□□□ -1.43
USP54-217ENST00000498213 MTUS2Q5JR59 1369 aa6.12□□□□□ -1.43
USP54-217ENST00000498213 PARD3Q8TEW0 1356 aa6.12□□□□□ -1.43
USP54-217ENST00000498213 FAM129BQ96TA1 746 aa6.12□□□□□ -1.43
USP54-217ENST00000498213 RUSC1Q9BVN2 902 aa6.12□□□□□ -1.43
USP54-217ENST00000498213 SHANK3Q9BYB0 1731 aa6.12□□□□□ -1.43
USP54-217ENST00000498213 NIF3L1Q9GZT8 377 aa6.12□□□□□ -1.43
USP54-217ENST00000498213 RNF208Q9H0X6 261 aa6.12□□□□□ -1.43
USP54-217ENST00000498213 EHD4Q9H223 541 aa6.12□□□□□ -1.43
USP54-217ENST00000498213 ATP10DQ9P241 1426 aa6.12□□□□□ -1.43
USP54-217ENST00000498213 RGPD1P0DJD0 1748 aa6.11□□□□□ -1.43
USP54-217ENST00000498213 ZFYVE9O95405 1425 aa6.11□□□□□ -1.43
USP54-217ENST00000498213 ARHGAP31Q2M1Z3 1444 aa6.11□□□□□ -1.43
USP54-217ENST00000498213 A0A1W2PP55 124 aa6.11□□□□□ -1.43
USP54-217ENST00000498213 METTL12A8MUP2 240 aa6.11□□□□□ -1.43
USP54-217ENST00000498213 ADAM11O75078 769 aa6.11□□□□□ -1.43
USP54-217ENST00000498213 GADD45BO75293 160 aaPredicted RBP6.11□□□□□ -1.43
USP54-217ENST00000498213 MED26O95402 600 aa6.11□□□□□ -1.43
USP54-217ENST00000498213 TGFB1P01137 390 aa6.11□□□□□ -1.43
USP54-217ENST00000498213 MAPK1P28482 360 aa6.11□□□□□ -1.43
USP54-217ENST00000498213 GSTM4Q03013 218 aa6.11□□□□□ -1.43
USP54-217ENST00000498213 ECM1Q16610 540 aa6.11□□□□□ -1.43
USP54-217ENST00000498213 UVSSAQ2YD98 709 aa6.11□□□□□ -1.43
USP54-217ENST00000498213 USPL1Q5W0Q7 1092 aa6.11□□□□□ -1.43
USP54-217ENST00000498213 ANKRD34AQ69YU3 496 aa6.11□□□□□ -1.43
USP54-217ENST00000498213 FAM196AQ6ZSG2 479 aa6.11□□□□□ -1.43
USP54-217ENST00000498213 KIAA1211Q6ZU35 1233 aa6.11□□□□□ -1.43
USP54-217ENST00000498213 VN1R5Q7Z5H4 357 aa6.11□□□□□ -1.43
USP54-217ENST00000498213 DDX54Q8TDD1 881 aaKnown RBP6.11□□□□□ -1.43
USP54-217ENST00000498213 UBL7Q96S82 380 aaPredicted RBP6.11□□□□□ -1.43
USP54-217ENST00000498213 NPHS2Q9NP85 383 aa6.11□□□□□ -1.43
USP54-217ENST00000498213 DCTN4Q9UJW0 460 aa6.11□□□□□ -1.43
USP54-217ENST00000498213 GNEQ9Y223 722 aaKnown RBP6.11□□□□□ -1.43
USP54-217ENST00000498213 CEP152O94986 1710 aa6.11□□□□□ -1.43
USP54-217ENST00000498213 MYOM1P52179 1685 aa6.1□□□□□ -1.43
USP54-217ENST00000498213 TRPM2O94759 1503 aa6.1□□□□□ -1.43
USP54-217ENST00000498213 CCDC141Q6ZP82 1450 aa6.1□□□□□ -1.43
USP54-217ENST00000498213 NOS1P29475 1434 aa6.1□□□□□ -1.43
USP54-217ENST00000498213 PIK3R4Q99570 1358 aa6.1□□□□□ -1.43
USP54-217ENST00000498213 A0A096LPE4 126 aa6.1□□□□□ -1.43
USP54-217ENST00000498213 A0A1W2PPZ6 126 aa6.1□□□□□ -1.43
USP54-217ENST00000498213 KIAA1324LA8MWY0 1029 aaPredicted RBP6.1□□□□□ -1.43
USP54-217ENST00000498213 SOX1O00570 391 aaPredicted RBP6.1□□□□□ -1.43
USP54-217ENST00000498213 EIF1AYO14602 144 aaKnown RBP6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms