RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 RIOK1Q9BRS2 568 aaKnown RBP19.73■□□□□ 0.75
SF3A1-209ENST00000496189 SAP30BPQ9UHR5 308 aaKnown RBP19.73■□□□□ 0.75
SF3A1-209ENST00000496189 FOCADQ5VW36 1801 aa19.72■□□□□ 0.75
SF3A1-209ENST00000496189 CCL15-CCL14A0A0B4J2E2 113 aa19.72■□□□□ 0.75
SF3A1-209ENST00000496189 TCRBV5S4A2TA0A5A2 114 aa19.72■□□□□ 0.75
SF3A1-209ENST00000496189 GJA5P36382 358 aa19.72■□□□□ 0.75
SF3A1-209ENST00000496189 CCL15Q16663 113 aa19.72■□□□□ 0.75
SF3A1-209ENST00000496189 CHD1LQ86WJ1 897 aa19.72■□□□□ 0.75
SF3A1-209ENST00000496189 IFNL1Q8IU54 200 aa19.72■□□□□ 0.75
SF3A1-209ENST00000496189 FSD1Q9BTV5 496 aa19.72■□□□□ 0.75
SF3A1-209ENST00000496189 LNPKQ9C0E8 428 aa19.72■□□□□ 0.75
SF3A1-209ENST00000496189 PALD1Q9ULE6 856 aa19.72■□□□□ 0.75
SF3A1-209ENST00000496189 MYH7P12883 1935 aa19.71■□□□□ 0.75
SF3A1-209ENST00000496189 MBD4O95243 580 aa19.71■□□□□ 0.75
SF3A1-209ENST00000496189 POLR3DP05423 398 aaPredicted RBP19.71■□□□□ 0.75
SF3A1-209ENST00000496189 ERICH6BQ5W0A0 696 aa19.71■□□□□ 0.75
SF3A1-209ENST00000496189 CNKSR2Q8WXI2 1034 aa19.71■□□□□ 0.75
SF3A1-209ENST00000496189 PHF20L1A8MW92 1017 aa19.7■□□□□ 0.74
SF3A1-209ENST00000496189 IRF6O14896 467 aa19.7■□□□□ 0.74
SF3A1-209ENST00000496189 LCORLQ8N3X6 602 aa19.7■□□□□ 0.74
SF3A1-209ENST00000496189 PI4K2BQ8TCG2 481 aa19.7■□□□□ 0.74
SF3A1-209ENST00000496189 OTUD7AQ8TE49 926 aaPredicted RBP19.7■□□□□ 0.74
SF3A1-209ENST00000496189 TBC1D2Q9BYX2 928 aa19.7■□□□□ 0.74
SF3A1-209ENST00000496189 ARMT1Q9H993 441 aa19.7■□□□□ 0.74
SF3A1-209ENST00000496189 MCM9Q9NXL9 1143 aa19.7■□□□□ 0.74
SF3A1-209ENST00000496189 CDK5RAP2Q96SN8 1893 aa19.7■□□□□ 0.74
SF3A1-209ENST00000496189 FAM196BA6NMK8 535 aa19.69■□□□□ 0.74
SF3A1-209ENST00000496189 RNF113AO15541 343 aaKnown RBP19.69■□□□□ 0.74
SF3A1-209ENST00000496189 PDE1AP54750 535 aa19.69■□□□□ 0.74
SF3A1-209ENST00000496189 COL13A1Q5TAT6 717 aaPredicted RBP19.69■□□□□ 0.74
SF3A1-209ENST00000496189 TNS4Q8IZW8 715 aa19.69■□□□□ 0.74
SF3A1-209ENST00000496189 APPBP2Q92624 585 aa19.69■□□□□ 0.74
SF3A1-209ENST00000496189 ATP8A2Q9NTI2 1148 aa19.69■□□□□ 0.74
SF3A1-209ENST00000496189 STAP2Q9UGK3 403 aa19.69■□□□□ 0.74
SF3A1-209ENST00000496189 SERPINB13Q9UIV8 391 aa19.69■□□□□ 0.74
SF3A1-209ENST00000496189 ZHX2Q9Y6X8 837 aa19.69■□□□□ 0.74
SF3A1-209ENST00000496189 MYH1P12882 1939 aa19.68■□□□□ 0.74
SF3A1-209ENST00000496189 LAMB1P07942 1786 aa19.68■□□□□ 0.74
SF3A1-209ENST00000496189 TESPA1A2RU30 521 aaPredicted RBP19.68■□□□□ 0.74
SF3A1-209ENST00000496189 TBC1D8O95759 1140 aa19.68■□□□□ 0.74
SF3A1-209ENST00000496189 PTPRAP18433 802 aa19.68■□□□□ 0.74
SF3A1-209ENST00000496189 SLC4A8Q2Y0W8 1093 aa19.68■□□□□ 0.74
SF3A1-209ENST00000496189 EVI5LQ96CN4 794 aa19.68■□□□□ 0.74
SF3A1-209ENST00000496189 CCDC136Q96JN2 1154 aa19.68■□□□□ 0.74
SF3A1-209ENST00000496189 MS4A4AQ96JQ5 239 aa19.68■□□□□ 0.74
SF3A1-209ENST00000496189 EHD4Q9H223 541 aa19.68■□□□□ 0.74
SF3A1-209ENST00000496189 AS3MTQ9HBK9 375 aa19.68■□□□□ 0.74
SF3A1-209ENST00000496189 GINM1Q9NU53 330 aa19.68■□□□□ 0.74
SF3A1-209ENST00000496189 SLC4A4Q9Y6R1 1079 aa19.68■□□□□ 0.74
SF3A1-209ENST00000496189 DOCK1Q14185 1865 aa19.68■□□□□ 0.74
SF3A1-209ENST00000496189 IGF2BP3O00425 579 aaKnown RBP eCLIP19.67■□□□□ 0.74
SF3A1-209ENST00000496189 CXCL11O14625 94 aa19.67■□□□□ 0.74
SF3A1-209ENST00000496189 ASNSP08243 561 aa19.67■□□□□ 0.74
SF3A1-209ENST00000496189 CAP2P40123 477 aa19.67■□□□□ 0.74
SF3A1-209ENST00000496189 SDR42E1Q8WUS8 393 aa19.67■□□□□ 0.74
SF3A1-209ENST00000496189 CFHR5Q9BXR6 569 aa19.67■□□□□ 0.74
SF3A1-209ENST00000496189 SALL3Q9BXA9 1300 aa19.67■□□□□ 0.74
SF3A1-209ENST00000496189 NAV1Q8NEY1 1877 aa19.67■□□□□ 0.74
SF3A1-209ENST00000496189 GNAT2P19087 354 aa19.66■□□□□ 0.74
SF3A1-209ENST00000496189 TAF1CQ15572 869 aaPredicted RBP19.66■□□□□ 0.74
SF3A1-209ENST00000496189 CENPQQ7L2Z9 268 aaPredicted RBP19.66■□□□□ 0.74
SF3A1-209ENST00000496189 FASTKD5Q7L8L6 764 aaKnown RBP19.66■□□□□ 0.74
SF3A1-209ENST00000496189 BRI3BPQ8WY22 251 aa19.66■□□□□ 0.74
SF3A1-209ENST00000496189 ZFYVE28Q9HCC9 887 aa19.66■□□□□ 0.74
SF3A1-209ENST00000496189 ZCCHC17Q9NP64 241 aaKnown RBP19.66■□□□□ 0.74
SF3A1-209ENST00000496189 DCP1AQ9NPI6 582 aaPredicted RBP19.66■□□□□ 0.74
SF3A1-209ENST00000496189 TAOK2Q9UL54 1235 aa19.66■□□□□ 0.74
SF3A1-209ENST00000496189 KCNH4Q9UQ05 1017 aa19.66■□□□□ 0.74
SF3A1-209ENST00000496189 USP17L5A8MUK1 530 aa19.65■□□□□ 0.74
SF3A1-209ENST00000496189 TRIM6-TRIM34B2RNG4 842 aa19.65■□□□□ 0.74
SF3A1-209ENST00000496189 METTL16Q86W50 562 aaKnown RBP19.65■□□□□ 0.74
SF3A1-209ENST00000496189 PUS7LQ9H0K6 701 aaKnown RBP19.65■□□□□ 0.74
SF3A1-209ENST00000496189 CABP5Q9NP86 173 aa19.65■□□□□ 0.74
SF3A1-209ENST00000496189 SLFNL1Q499Z3 407 aa19.64■□□□□ 0.73
SF3A1-209ENST00000496189 NOM1Q5C9Z4 860 aaKnown RBP19.64■□□□□ 0.73
SF3A1-209ENST00000496189 TICAM2Q86XR7 235 aa19.64■□□□□ 0.73
SF3A1-209ENST00000496189 TRIM75PA6NK02 468 aa19.63■□□□□ 0.73
SF3A1-209ENST00000496189 GPR25O00155 361 aa19.63■□□□□ 0.73
SF3A1-209ENST00000496189 FKTNO75072 461 aa19.63■□□□□ 0.73
SF3A1-209ENST00000496189 APPP05067 770 aa19.63■□□□□ 0.73
SF3A1-209ENST00000496189 SLURP2P0DP57 97 aa19.63■□□□□ 0.73
SF3A1-209ENST00000496189 CERKLQ49MI3 558 aaPredicted RBP19.63■□□□□ 0.73
SF3A1-209ENST00000496189 GADL1Q6ZQY3 521 aa19.63■□□□□ 0.73
SF3A1-209ENST00000496189 ANKRD23Q86SG2 305 aa19.63■□□□□ 0.73
SF3A1-209ENST00000496189 PTPN18Q99952 460 aa19.63■□□□□ 0.73
SF3A1-209ENST00000496189 NACAP1Q9BZK3 213 aa19.63■□□□□ 0.73
SF3A1-209ENST00000496189 ARPP21Q9UBL0 812 aaPredicted RBP19.63■□□□□ 0.73
SF3A1-209ENST00000496189 SWAP70Q9UH65 585 aa19.63■□□□□ 0.73
SF3A1-209ENST00000496189 AFG3L2Q9Y4W6 797 aa19.63■□□□□ 0.73
SF3A1-209ENST00000496189 BTBD19C9JJ37 291 aa19.62■□□□□ 0.73
SF3A1-209ENST00000496189 PRKAB2O43741 272 aa19.62■□□□□ 0.73
SF3A1-209ENST00000496189 GDF11O95390 407 aa19.62■□□□□ 0.73
SF3A1-209ENST00000496189 ZNF280CQ8ND82 737 aa19.62■□□□□ 0.73
SF3A1-209ENST00000496189 OSBP2Q969R2 916 aa19.62■□□□□ 0.73
SF3A1-209ENST00000496189 RILPL2Q969X0 211 aa19.62■□□□□ 0.73
SF3A1-209ENST00000496189 STRBPQ96SI9 672 aaKnown RBP19.62■□□□□ 0.73
SF3A1-209ENST00000496189 DNAJC18Q9H819 358 aa19.62■□□□□ 0.73
SF3A1-209ENST00000496189 SIPA1L1O43166 1804 aa19.61■□□□□ 0.73
SF3A1-209ENST00000496189 ATAD5Q96QE3 1844 aa19.61■□□□□ 0.73
SF3A1-209ENST00000496189 A0A0G2JLL6 359 aaPredicted RBP19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms