RNA–Protein interactions for RNA: ENST00000494654.1

MDC1-208, Transcript of mediator of DNA damage checkpoint 1, human

TSL 3

Gene MDC1, Length 148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MDC1-208	ENST00000494654	RRP7A	Q9Y3A4	280 aa	Known RBP	3.14	□□□□□ -1.91
MDC1-208	ENST00000494654	MRFAP1	Q9Y605	127 aa		3.14	□□□□□ -1.91
MDC1-208	ENST00000494654	PARP3	Q9Y6F1	533 aa		3.14	□□□□□ -1.91
MDC1-208	ENST00000494654		V9GY48	417 aa	Predicted RBP	3.14	□□□□□ -1.91
MDC1-208	ENST00000494654	SOS1	Q07889	1333 aa	Predicted RBP	3.14	□□□□□ -1.91
MDC1-208	ENST00000494654	SLIT1	O75093	1534 aa		3.14	□□□□□ -1.91
MDC1-208	ENST00000494654	SRCAP	Q6ZRS2	3230 aa		3.14	□□□□□ -1.91
MDC1-208	ENST00000494654	PNPLA6	Q8IY17	1366 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	JCAD	Q9P266	1359 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	NUP188	Q5SRE5	1749 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	RGPD8	O14715	1765 aa	Predicted RBP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	RGPD5	Q99666	1765 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	MYH14	Q7Z406	1995 aa	Known RBP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654		A0A1B0GUA9	196 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	MPHOSPH10	O00566	681 aa	Known RBP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	CHUK	O15111	745 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	ST8SIA5	O15466	376 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	ZBTB24	O43167	697 aa	Predicted RBP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	SIAH2	O43255	324 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	ZEB2	O60315	1214 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	GIGYF1	O75420	1035 aa	Predicted RBP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	TUBB	P07437	444 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	SYT1	P21579	422 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	SCP2	P22307	547 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	HNRNPH1	P31943	449 aa	Known RBP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	HSPA4	P34932	840 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	NF2	P35240	595 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	RDX	P35241	583 aa	Known RBP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	TMPO	P42166	694 aa	Known RBP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	RPIA	P49247	311 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	AARS	P49588	968 aa	Known RBP eCLIP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	ZNF165	P49910	485 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	RWDD2B	P57060	319 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	GNAI1	P63096	354 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	TUBB4B	P68371	445 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	PPP2R3A	Q06190	1150 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	GRIK3	Q13003	919 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	MTA1	Q13330	715 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	MCM6	Q14566	821 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	TMEM132A	Q24JP5	1023 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	ZC3H12A	Q5D1E8	599 aa	Known RBP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	WLS	Q5T9L3	541 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	HDX	Q7Z353	690 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	ANKRD18A	Q8IVF6	992 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	RPAP2	Q8IXW5	612 aa	Predicted RBP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	CEP57L1	Q8IYX8	460 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	CNNM3	Q8NE01	707 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	CTCFL	Q8NI51	663 aa	Predicted RBP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	N4BP2L2	Q92802	583 aa	Predicted RBP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	XAGE2	Q96GT9	111 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	PUS7	Q96PZ0	661 aa	Known RBP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	PLEKHF1	Q96S99	279 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	BAG1	Q99933	345 aa	Predicted RBP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	SH3GL3	Q99963	347 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	PAIP2	Q9BPZ3	127 aa	Known RBP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	BPIFA3	Q9BQP9	254 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	THUMPD2	Q9BTF0	503 aa	Known RBP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	CARD6	Q9BX69	1037 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	TEX13A	Q9BXU3	409 aa	Predicted RBP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	SCAND2P	Q9GZW5	306 aa	Predicted RBP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	DNAJC25	Q9H1X3	360 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	BICC1	Q9H694	974 aa	Known RBP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	C1orf115	Q9H7X2	142 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	VIPAS39	Q9H9C1	493 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	SH2B1	Q9NRF2	756 aa	Predicted RBP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	SPATS2L	Q9NUQ6	558 aa	Known RBP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	PALD1	Q9ULE6	856 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	SMC3	Q9UQE7	1217 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	FAN1	Q9Y2M0	1017 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	ZNF142	P52746	1687 aa	Predicted RBP	3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	RPGRIP1L	Q68CZ1	1315 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654	EVC2	Q86UK5	1308 aa		3.13	□□□□□ -1.91
MDC1-208	ENST00000494654		A0A1W2PP64	1363 aa		3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	RGPD2	P0DJD1	1756 aa		3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	LAMB2	P55268	1798 aa		3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	NRXN3	Q9Y4C0	1643 aa		3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	NCAPD2	Q15021	1401 aa		3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	ADAMTS7	Q9UKP4	1686 aa		3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	CAMTA1	Q9Y6Y1	1673 aa		3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	MAGEB6P1	A0A0J9YX57	407 aa		3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	SHTN1	A0MZ66	631 aa		3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	PES1	O00541	588 aa	Known RBP	3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	ZSCAN12	O43309	604 aa		3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	PRPF6	O94906	941 aa	Known RBP	3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	SNUPN	O95149	360 aa	Known RBP	3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	IPO7	O95373	1038 aa	Known RBP	3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	GNAI3	P08754	354 aa		3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	FBXO45	P0C2W1	286 aa		3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	TSPY4	P0CV99	314 aa		3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	TSPY10	P0CW01	314 aa		3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	SMPD1	P17405	629 aa		3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	SFPQ	P23246	707 aa	Known RBP eCLIP	3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	CHML	P26374	656 aa		3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	TXLNA	P40222	546 aa		3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	HNRNPM	P52272	730 aa	Known RBP eCLIP	3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	SLC8A3	P57103	927 aa		3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	DNM1	Q05193	864 aa	Known RBP	3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	TBC1D8B	Q0IIM8	1120 aa		3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	SCRN1	Q12765	414 aa		3.12	□□□□□ -1.91
MDC1-208	ENST00000494654	TRAF1	Q13077	416 aa		3.12	□□□□□ -1.91

Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms