RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	TAF1D	Q9H5J8	278 aa	Predicted RBP	13.51	□□□□□ -0.25
BRCA1-222	ENST00000493919	CNOT7	Q9UIV1	285 aa	Known RBP	13.51	□□□□□ -0.25
BRCA1-222	ENST00000493919	SMARCA5	O60264	1052 aa	Predicted RBP	13.51	□□□□□ -0.25
BRCA1-222	ENST00000493919	IRX1	P78414	480 aa	Predicted RBP	13.51	□□□□□ -0.25
BRCA1-222	ENST00000493919	MAP9	Q49MG5	647 aa		13.51	□□□□□ -0.25
BRCA1-222	ENST00000493919	MFSD14B	Q5SR56	506 aa		13.51	□□□□□ -0.25
BRCA1-222	ENST00000493919	PDCL2	Q8N4E4	241 aa		13.51	□□□□□ -0.25
BRCA1-222	ENST00000493919	AGBL3	Q8NEM8	1001 aa		13.51	□□□□□ -0.25
BRCA1-222	ENST00000493919	DBNL	Q9UJU6	430 aa	Known RBP	13.51	□□□□□ -0.25
BRCA1-222	ENST00000493919		H7C1D1	291 aa		13.5	□□□□□ -0.25
BRCA1-222	ENST00000493919	CASQ1	P31415	396 aa		13.5	□□□□□ -0.25
BRCA1-222	ENST00000493919	TTC39A	Q5SRH9	613 aa		13.5	□□□□□ -0.25
BRCA1-222	ENST00000493919	CERS5	Q8N5B7	392 aa		13.5	□□□□□ -0.25
BRCA1-222	ENST00000493919	DPF2	Q92785	391 aa		13.5	□□□□□ -0.25
BRCA1-222	ENST00000493919	DCTPP1	Q9H773	170 aa		13.5	□□□□□ -0.25
BRCA1-222	ENST00000493919	FAM205A	Q6ZU69	1335 aa		13.49	□□□□□ -0.25
BRCA1-222	ENST00000493919	POTEI	P0CG38	1075 aa		13.49	□□□□□ -0.25
BRCA1-222	ENST00000493919	POTEJ	P0CG39	1038 aa		13.49	□□□□□ -0.25
BRCA1-222	ENST00000493919	RASGRF1	Q13972	1273 aa		13.49	□□□□□ -0.25
BRCA1-222	ENST00000493919	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	13.49	□□□□□ -0.25
BRCA1-222	ENST00000493919	CCDC158	Q5M9N0	1113 aa		13.49	□□□□□ -0.25
BRCA1-222	ENST00000493919	SAMD7	Q7Z3H4	446 aa		13.49	□□□□□ -0.25
BRCA1-222	ENST00000493919	DEF6	Q9H4E7	631 aa		13.49	□□□□□ -0.25
BRCA1-222	ENST00000493919	ADARB2	Q9NS39	739 aa	Known RBP	13.49	□□□□□ -0.25
BRCA1-222	ENST00000493919	CHCHD3	Q9NX63	227 aa	Known RBP	13.49	□□□□□ -0.25
BRCA1-222	ENST00000493919	SMAP	O00193	183 aa		13.49	□□□□□ -0.25
BRCA1-222	ENST00000493919	IFIT2	P09913	472 aa	Known RBP	13.49	□□□□□ -0.25
BRCA1-222	ENST00000493919	USP17L8	P0C7I0	530 aa		13.49	□□□□□ -0.25
BRCA1-222	ENST00000493919	NAP1L1	P55209	391 aa	Known RBP	13.49	□□□□□ -0.25
BRCA1-222	ENST00000493919	OGFOD1	Q8N543	542 aa		13.49	□□□□□ -0.25
BRCA1-222	ENST00000493919	TRPM4	Q8TD43	1214 aa		13.49	□□□□□ -0.25
BRCA1-222	ENST00000493919	ARPC5L	Q9BPX5	153 aa		13.49	□□□□□ -0.25
BRCA1-222	ENST00000493919	SUN2	Q9UH99	717 aa		13.49	□□□□□ -0.25
BRCA1-222	ENST00000493919	DENND2A	Q9ULE3	1009 aa		13.49	□□□□□ -0.25
BRCA1-222	ENST00000493919	CLEC11A	Q9Y240	323 aa		13.49	□□□□□ -0.25
BRCA1-222	ENST00000493919	SUGT1	Q9Y2Z0	365 aa		13.49	□□□□□ -0.25
BRCA1-222	ENST00000493919	PES1	O00541	588 aa	Known RBP	13.48	□□□□□ -0.25
BRCA1-222	ENST00000493919	FAM200B	P0CF97	657 aa		13.48	□□□□□ -0.25
BRCA1-222	ENST00000493919	RBM5	P52756	815 aa	Known RBP eCLIP	13.48	□□□□□ -0.25
BRCA1-222	ENST00000493919	PI16	Q6UXB8	463 aa		13.48	□□□□□ -0.25
BRCA1-222	ENST00000493919	GML	Q99445	158 aa		13.48	□□□□□ -0.25
BRCA1-222	ENST00000493919	TACO1	Q9BSH4	297 aa	Known RBP	13.48	□□□□□ -0.25
BRCA1-222	ENST00000493919	ADAMTSL1	Q8N6G6	1762 aa		13.47	□□□□□ -0.25
BRCA1-222	ENST00000493919	SEMA3E	O15041	775 aa		13.47	□□□□□ -0.25
BRCA1-222	ENST00000493919	PPFIA2	O75334	1257 aa		13.47	□□□□□ -0.25
BRCA1-222	ENST00000493919	EGFR	P00533	1210 aa		13.47	□□□□□ -0.25
BRCA1-222	ENST00000493919	MCCD1	P59942	119 aa	Predicted RBP	13.47	□□□□□ -0.25
BRCA1-222	ENST00000493919	KIF4B	Q2VIQ3	1234 aa		13.47	□□□□□ -0.25
BRCA1-222	ENST00000493919	PNMA8A	Q86V59	439 aa	Predicted RBP	13.47	□□□□□ -0.25
BRCA1-222	ENST00000493919	PIAS4	Q8N2W9	510 aa	Predicted RBP	13.47	□□□□□ -0.25
BRCA1-222	ENST00000493919	RWDD1	Q9H446	243 aa	Predicted RBP	13.47	□□□□□ -0.25
BRCA1-222	ENST00000493919	CWC15	Q9P013	229 aa	Known RBP	13.47	□□□□□ -0.25
BRCA1-222	ENST00000493919	HDAC9	Q9UKV0	1011 aa		13.47	□□□□□ -0.25
BRCA1-222	ENST00000493919	UQCRFS1P1	P0C7P4	283 aa		13.47	□□□□□ -0.25
BRCA1-222	ENST00000493919	SCARF1	Q14162	830 aa		13.47	□□□□□ -0.25
BRCA1-222	ENST00000493919	PPP2R5A	Q15172	486 aa		13.47	□□□□□ -0.25
BRCA1-222	ENST00000493919	TERF2	Q15554	542 aa		13.47	□□□□□ -0.25
BRCA1-222	ENST00000493919	WDR66	Q8TBY9	1149 aa		13.47	□□□□□ -0.25
BRCA1-222	ENST00000493919	SNRK	Q9NRH2	765 aa		13.47	□□□□□ -0.25
BRCA1-222	ENST00000493919	MAGEC2	Q9UBF1	373 aa	Predicted RBP	13.47	□□□□□ -0.25
BRCA1-222	ENST00000493919	NOL7	Q9UMY1	257 aa	Known RBP	13.47	□□□□□ -0.25
BRCA1-222	ENST00000493919	TTF2	Q9UNY4	1162 aa	Known RBP	13.47	□□□□□ -0.25
BRCA1-222	ENST00000493919	JRKL	Q9Y4A0	524 aa		13.47	□□□□□ -0.25
BRCA1-222	ENST00000493919	TOMM70	O94826	608 aa		13.46	□□□□□ -0.25
BRCA1-222	ENST00000493919	MCAM	P43121	646 aa		13.46	□□□□□ -0.25
BRCA1-222	ENST00000493919	FKBP1A	P62942	108 aa	Known RBP	13.46	□□□□□ -0.25
BRCA1-222	ENST00000493919	GRIK5	Q16478	980 aa		13.46	□□□□□ -0.25
BRCA1-222	ENST00000493919	USP50	Q70EL3	339 aa	Predicted RBP	13.46	□□□□□ -0.25
BRCA1-222	ENST00000493919	MYOZ2	Q9NPC6	264 aa		13.46	□□□□□ -0.25
BRCA1-222	ENST00000493919	HMG20B	Q9P0W2	317 aa		13.46	□□□□□ -0.25
BRCA1-222	ENST00000493919	IGHD	P01880	384 aa		13.45	□□□□□ -0.26
BRCA1-222	ENST00000493919	SKIL	P12757	684 aa		13.45	□□□□□ -0.26
BRCA1-222	ENST00000493919	ATP2B1	P20020	1258 aa		13.45	□□□□□ -0.26
BRCA1-222	ENST00000493919	PAX3	P23760	479 aa		13.45	□□□□□ -0.26
BRCA1-222	ENST00000493919	PRDX5	P30044	214 aa		13.45	□□□□□ -0.26
BRCA1-222	ENST00000493919	ZNF280A	P59817	542 aa	Predicted RBP	13.45	□□□□□ -0.26
BRCA1-222	ENST00000493919	ANKRD45	Q5TZF3	282 aa		13.45	□□□□□ -0.26
BRCA1-222	ENST00000493919	LDHD	Q86WU2	507 aa		13.45	□□□□□ -0.26
BRCA1-222	ENST00000493919	ZNF710	Q8N1W2	664 aa		13.45	□□□□□ -0.26
BRCA1-222	ENST00000493919	SPATA5	Q8NB90	893 aa		13.45	□□□□□ -0.26
BRCA1-222	ENST00000493919	EVI5L	Q96CN4	794 aa		13.45	□□□□□ -0.26
BRCA1-222	ENST00000493919	GCC1	Q96CN9	775 aa		13.45	□□□□□ -0.26
BRCA1-222	ENST00000493919	ETAA1	Q9NY74	926 aa		13.45	□□□□□ -0.26
BRCA1-222	ENST00000493919	PPFIA4	O75335	1185 aa		13.45	□□□□□ -0.26
BRCA1-222	ENST00000493919	TNNT1	P13805	278 aa		13.45	□□□□□ -0.26
BRCA1-222	ENST00000493919	NAT1	P18440	290 aa		13.44	□□□□□ -0.26
BRCA1-222	ENST00000493919	HIRA	P54198	1017 aa	Predicted RBP	13.44	□□□□□ -0.26
BRCA1-222	ENST00000493919	PSMC1	P62191	440 aa	Known RBP	13.44	□□□□□ -0.26
BRCA1-222	ENST00000493919	RAD51AP2	Q09MP3	1159 aa		13.44	□□□□□ -0.26
BRCA1-222	ENST00000493919	TRAF1	Q13077	416 aa		13.44	□□□□□ -0.26
BRCA1-222	ENST00000493919	SMC1B	Q8NDV3	1235 aa		13.44	□□□□□ -0.26
BRCA1-222	ENST00000493919	RBM46	Q8TBY0	533 aa	Known RBP	13.44	□□□□□ -0.26
BRCA1-222	ENST00000493919	ZNF396	Q96N95	335 aa	Predicted RBP	13.44	□□□□□ -0.26
BRCA1-222	ENST00000493919	NDUFB9	Q9Y6M9	179 aa		13.44	□□□□□ -0.26
BRCA1-222	ENST00000493919	PDS5A	Q29RF7	1337 aa	Known RBP	13.44	□□□□□ -0.26
BRCA1-222	ENST00000493919	AKAP11	Q9UKA4	1901 aa		13.43	□□□□□ -0.26
BRCA1-222	ENST00000493919	LDHB	P07195	334 aa	Known RBP	13.43	□□□□□ -0.26
BRCA1-222	ENST00000493919	MAP1S	Q66K74	1059 aa	Predicted RBP	13.43	□□□□□ -0.26
BRCA1-222	ENST00000493919	TBC1D9	Q6ZT07	1266 aa		13.43	□□□□□ -0.26
BRCA1-222	ENST00000493919	ZGPAT	Q8N5A5	531 aa	Known RBP	13.43	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms