RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 RBSNQ9H1K0 784 aa4.9□□□□□ -1.63
BRCA1-220ENST00000492859 ZCCHC17Q9NP64 241 aaKnown RBP4.9□□□□□ -1.63
BRCA1-220ENST00000492859 CYLDQ9NQC7 956 aa4.9□□□□□ -1.63
BRCA1-220ENST00000492859 ATG3Q9NT62 314 aa4.9□□□□□ -1.63
BRCA1-220ENST00000492859 PIH1D1Q9NWS0 290 aaKnown RBP4.9□□□□□ -1.63
BRCA1-220ENST00000492859 KCTD5Q9NXV2 234 aa4.9□□□□□ -1.63
BRCA1-220ENST00000492859 CFAP45Q9UL16 551 aa4.9□□□□□ -1.63
BRCA1-220ENST00000492859 LEMD3Q9Y2U8 911 aa4.9□□□□□ -1.63
BRCA1-220ENST00000492859 TMX2Q9Y320 296 aa4.9□□□□□ -1.63
BRCA1-220ENST00000492859 PCDHGB3Q9Y5G1 929 aa4.9□□□□□ -1.63
BRCA1-220ENST00000492859 DNMT3AQ9Y6K1 912 aaPredicted RBP4.9□□□□□ -1.63
BRCA1-220ENST00000492859 MOXD2PA6NHM9 499 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 SPTLC1O15269 473 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 SPTLC2O15270 562 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 FMNL1O95466 1100 aaPredicted RBP4.89□□□□□ -1.63
BRCA1-220ENST00000492859 PGRP06401 933 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 SLC10A3P09131 477 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 MYCLP1P12525 358 aaPredicted RBP4.89□□□□□ -1.63
BRCA1-220ENST00000492859 NEK2P51955 445 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 GTF2A2P52657 109 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 NLRP12P59046 1061 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 COPS2P61201 443 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 GABREP78334 506 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 NSUN2Q08J23 767 aaKnown RBP eCLIP4.89□□□□□ -1.63
BRCA1-220ENST00000492859 PICALMQ13492 652 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 RAB33AQ14088 237 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 WTAPQ15007 396 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 DIXDC1Q155Q3 683 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 SHROOM1Q2M3G4 852 aaPredicted RBP4.89□□□□□ -1.63
BRCA1-220ENST00000492859 FAM102BQ5T8I3 360 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 NXNQ6DKJ4 435 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 KCNV1Q6PIU1 500 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 ANKRD18AQ8IVF6 992 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 MYOCDQ8IZQ8 938 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.89□□□□□ -1.63
BRCA1-220ENST00000492859 PJA1Q8NG27 643 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 OR8H1Q8NGG4 311 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 GTF3C2Q8WUA4 911 aaPredicted RBP4.89□□□□□ -1.63
BRCA1-220ENST00000492859 ZNF75CPQ92670 426 aaPredicted RBP4.89□□□□□ -1.63
BRCA1-220ENST00000492859 JAKMIP2Q96AA8 810 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 FAM81BQ96LP2 452 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 ZMAT2Q96NC0 199 aaKnown RBP4.89□□□□□ -1.63
BRCA1-220ENST00000492859 MOGAT1Q96PD6 335 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 HAUS7Q99871 368 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 MMTAG2Q9BU76 263 aaKnown RBP4.89□□□□□ -1.63
BRCA1-220ENST00000492859 MRPL9Q9BYD2 267 aaKnown RBP4.89□□□□□ -1.63
BRCA1-220ENST00000492859 RBCK1Q9BYM8 510 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 IRX2Q9BZI1 471 aaPredicted RBP4.89□□□□□ -1.63
BRCA1-220ENST00000492859 IQCGQ9H095 443 aaKnown RBP4.89□□□□□ -1.63
BRCA1-220ENST00000492859 TSPYL1Q9H0U9 437 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 PLCB1Q9NQ66 1216 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 IRAK4Q9NWZ3 460 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 EPS15L1Q9UBC2 864 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 SNCAIPQ9Y6H5 919 aa4.89□□□□□ -1.63
BRCA1-220ENST00000492859 LINC00854A0A1B0GVQ3 168 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 J3KRW8 73 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 RASA4O43374 803 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 KATNA1O75449 491 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 E2F6O75461 281 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 CTSHP09668 335 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 MTHFD1P11586 935 aaKnown RBP4.88□□□□□ -1.63
BRCA1-220ENST00000492859 CCNCP24863 283 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 ETFBP38117 255 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 RAD52P43351 418 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 MAPK8P45983 427 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 SESN3P58005 492 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 FKBP4Q02790 459 aaKnown RBP eCLIP4.88□□□□□ -1.63
BRCA1-220ENST00000492859 MRPL28Q13084 256 aaKnown RBP4.88□□□□□ -1.63
BRCA1-220ENST00000492859 CHAF1AQ13111 956 aaPredicted RBP4.88□□□□□ -1.63
BRCA1-220ENST00000492859 EIF4A2Q14240 407 aaKnown RBP4.88□□□□□ -1.63
BRCA1-220ENST00000492859 SWI5Q1ZZU3 235 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 INF2Q27J81 1249 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 NBPF8Q3BBV2 869 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 RABL6Q3YEC7 729 aaPredicted RBP4.88□□□□□ -1.63
BRCA1-220ENST00000492859 IFFO2Q5TF58 517 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 LRCH2Q5VUJ6 765 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 FAM180BQ6P0A1 224 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 SYNE3Q6ZMZ3 975 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 TOGARAM2Q6ZUX3 1019 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 OTOP3Q7RTS5 596 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 MTERF4Q7Z6M4 381 aaKnown RBP4.88□□□□□ -1.63
BRCA1-220ENST00000492859 THNSL2Q86YJ6 484 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 TRIM22Q8IYM9 498 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 DEPDC4Q8N2C3 294 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 MAGEB6Q8N7X4 407 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 IL17REQ8NFR9 667 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 ANKRD49Q8WVL7 239 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 EMID1Q96A84 441 aaPredicted RBP4.88□□□□□ -1.63
BRCA1-220ENST00000492859 TRIM11Q96F44 468 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 ASIC4Q96FT7 647 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 ELAC2Q9BQ52 826 aaKnown RBP4.88□□□□□ -1.63
BRCA1-220ENST00000492859 SLC39A3Q9BRY0 314 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 TRIM55Q9BYV6 548 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 ALG13Q9NP73 1137 aaKnown RBP4.88□□□□□ -1.63
BRCA1-220ENST00000492859 MED4Q9NPJ6 270 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 ATP8A2Q9NTI2 1148 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 BLOC1S4Q9NUP1 217 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 OBP2AQ9NY56 170 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 CLIP2Q9UDT6 1046 aa4.88□□□□□ -1.63
BRCA1-220ENST00000492859 SEPT3Q9UH03 358 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms