RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 CDK5RAP2Q96SN8 1893 aa15.27■□□□□ 0.03
CPSF3-204ENST00000489403 GJB1P08034 283 aa15.26■□□□□ 0.03
CPSF3-204ENST00000489403 UQCRFS1P1P0C7P4 283 aa15.26■□□□□ 0.03
CPSF3-204ENST00000489403 RRP1BQ14684 758 aaKnown RBP15.26■□□□□ 0.03
CPSF3-204ENST00000489403 TEX11Q8IYF3 940 aa15.26■□□□□ 0.03
CPSF3-204ENST00000489403 RNF208Q9H0X6 261 aa15.26■□□□□ 0.03
CPSF3-204ENST00000489403 BIN2Q9UBW5 565 aaPredicted RBP15.26■□□□□ 0.03
CPSF3-204ENST00000489403 MYO5AQ9Y4I1 1855 aaKnown RBP15.26■□□□□ 0.03
CPSF3-204ENST00000489403 FOCADQ5VW36 1801 aa15.26■□□□□ 0.03
CPSF3-204ENST00000489403 H0YGN5 161 aa15.25■□□□□ 0.03
CPSF3-204ENST00000489403 TNPO2O14787 897 aaKnown RBP15.25■□□□□ 0.03
CPSF3-204ENST00000489403 FLT3LGP49771 235 aa15.25■□□□□ 0.03
CPSF3-204ENST00000489403 FXR1P51114 621 aaKnown RBP eCLIP15.25■□□□□ 0.03
CPSF3-204ENST00000489403 POLA2Q14181 598 aa15.25■□□□□ 0.03
CPSF3-204ENST00000489403 TNNI3KQ59H18 835 aa15.25■□□□□ 0.03
CPSF3-204ENST00000489403 UBE2Q1Q7Z7E8 422 aa15.25■□□□□ 0.03
CPSF3-204ENST00000489403 ANKRD13CQ8N6S4 541 aa15.25■□□□□ 0.03
CPSF3-204ENST00000489403 PROCA1Q8NCQ7 364 aaPredicted RBP15.25■□□□□ 0.03
CPSF3-204ENST00000489403 SH3RF3Q8TEJ3 882 aaPredicted RBP15.25■□□□□ 0.03
CPSF3-204ENST00000489403 UNC93B1Q9H1C4 597 aa15.25■□□□□ 0.03
CPSF3-204ENST00000489403 GPR108Q9NPR9 543 aa15.25■□□□□ 0.03
CPSF3-204ENST00000489403 LRP2BPQ9P2M1 347 aa15.25■□□□□ 0.03
CPSF3-204ENST00000489403 FPGT-TNNI3KV9GXZ4 949 aa15.25■□□□□ 0.03
CPSF3-204ENST00000489403 DOCK3Q8IZD9 2030 aa15.24■□□□□ 0.03
CPSF3-204ENST00000489403 ADCY3O60266 1144 aa15.24■□□□□ 0.03
CPSF3-204ENST00000489403 ELNP15502 786 aa15.24■□□□□ 0.03
CPSF3-204ENST00000489403 CAP2P40123 477 aa15.24■□□□□ 0.03
CPSF3-204ENST00000489403 SPP2Q13103 211 aa15.24■□□□□ 0.03
CPSF3-204ENST00000489403 IRF5Q13568 498 aa15.24■□□□□ 0.03
CPSF3-204ENST00000489403 FAM110CQ1W6H9 321 aa15.24■□□□□ 0.03
CPSF3-204ENST00000489403 TTC39AQ5SRH9 613 aa15.24■□□□□ 0.03
CPSF3-204ENST00000489403 ZKSCAN2Q63HK3 967 aa15.24■□□□□ 0.03
CPSF3-204ENST00000489403 ZNF280CQ8ND82 737 aa15.24■□□□□ 0.03
CPSF3-204ENST00000489403 DBNDD2Q9BQY9 259 aa15.24■□□□□ 0.03
CPSF3-204ENST00000489403 TBC1D2Q9BYX2 928 aa15.24■□□□□ 0.03
CPSF3-204ENST00000489403 SNRKQ9NRH2 765 aa15.24■□□□□ 0.03
CPSF3-204ENST00000489403 AATFQ9NY61 560 aaKnown RBP eCLIP15.24■□□□□ 0.03
CPSF3-204ENST00000489403 PNMA3Q9UL41 463 aa15.24■□□□□ 0.03
CPSF3-204ENST00000489403 INHAP05111 366 aa15.23■□□□□ 0.03
CPSF3-204ENST00000489403 HMGCS2P54868 508 aa15.23■□□□□ 0.03
CPSF3-204ENST00000489403 NAA16Q6N069 864 aaPredicted RBP15.23■□□□□ 0.03
CPSF3-204ENST00000489403 SSH3Q8TE77 659 aa15.23■□□□□ 0.03
CPSF3-204ENST00000489403 PXYLP1Q8TE99 480 aa15.23■□□□□ 0.03
CPSF3-204ENST00000489403 U2AF1L4Q8WU68 220 aaKnown RBP15.23■□□□□ 0.03
CPSF3-204ENST00000489403 NOL10Q9BSC4 688 aaKnown RBP15.23■□□□□ 0.03
CPSF3-204ENST00000489403 HERC5Q9UII4 1024 aaKnown RBP15.23■□□□□ 0.03
CPSF3-204ENST00000489403 USP17L5A8MUK1 530 aa15.22■□□□□ 0.03
CPSF3-204ENST00000489403 CYP2E1P05181 493 aaPredicted RBP15.22■□□□□ 0.03
CPSF3-204ENST00000489403 ATP8B2P98198 1209 aa15.22■□□□□ 0.03
CPSF3-204ENST00000489403 SH3D19Q5HYK7 790 aa15.22■□□□□ 0.03
CPSF3-204ENST00000489403 CCDC158Q5M9N0 1113 aa15.22■□□□□ 0.03
CPSF3-204ENST00000489403 ADGRA1Q86SQ6 560 aa15.22■□□□□ 0.03
CPSF3-204ENST00000489403 DPF3Q92784 378 aa15.22■□□□□ 0.03
CPSF3-204ENST00000489403 C1orf115Q9H7X2 142 aa15.22■□□□□ 0.03
CPSF3-204ENST00000489403 DNAJC18Q9H819 358 aa15.22■□□□□ 0.03
CPSF3-204ENST00000489403 PI4KBQ9UBF8 816 aa15.22■□□□□ 0.03
CPSF3-204ENST00000489403 FLT1P17948 1338 aa15.21■□□□□ 0.03
CPSF3-204ENST00000489403 SGPL1O95470 568 aa15.21■□□□□ 0.03
CPSF3-204ENST00000489403 BAG3O95817 575 aa15.21■□□□□ 0.03
CPSF3-204ENST00000489403 ZAP70P43403 619 aa15.21■□□□□ 0.03
CPSF3-204ENST00000489403 PPP4CP60510 307 aa15.21■□□□□ 0.03
CPSF3-204ENST00000489403 OS9Q13438 667 aaPredicted RBP15.21■□□□□ 0.03
CPSF3-204ENST00000489403 MAPKAPK5Q8IW41 473 aa15.21■□□□□ 0.03
CPSF3-204ENST00000489403 TGFBRAP1Q8WUH2 860 aa15.21■□□□□ 0.03
CPSF3-204ENST00000489403 COA7Q96BR5 231 aa15.21■□□□□ 0.03
CPSF3-204ENST00000489403 HTATIP2Q9BUP3 242 aa15.21■□□□□ 0.03
CPSF3-204ENST00000489403 DHX36Q9H2U1 1008 aaKnown RBP15.21■□□□□ 0.03
CPSF3-204ENST00000489403 AS3MTQ9HBK9 375 aa15.21■□□□□ 0.03
CPSF3-204ENST00000489403 SURF6O75683 361 aaKnown RBP15.2■□□□□ 0.02
CPSF3-204ENST00000489403 FARP2O94887 1054 aaPredicted RBP15.2■□□□□ 0.02
CPSF3-204ENST00000489403 PLCG2P16885 1265 aa15.2■□□□□ 0.02
CPSF3-204ENST00000489403 PABPC4Q13310 644 aaKnown RBP eCLIP15.2■□□□□ 0.024e-9■■■□□ 18.8
CPSF3-204ENST00000489403 CHRDL2Q6WN34 429 aa15.2■□□□□ 0.02
CPSF3-204ENST00000489403 ZNF512BQ96KM6 892 aaPredicted RBP15.2■□□□□ 0.02
CPSF3-204ENST00000489403 ASCC2Q9H1I8 757 aaPredicted RBP15.2■□□□□ 0.02
CPSF3-204ENST00000489403 TLR7Q9NYK1 1049 aaKnown RBP15.2■□□□□ 0.02
CPSF3-204ENST00000489403 TAOK2Q9UL54 1235 aa15.2■□□□□ 0.02
CPSF3-204ENST00000489403 PLXNB2O15031 1838 aa15.2■□□□□ 0.02
CPSF3-204ENST00000489403 GCLCP48506 637 aaPredicted RBP15.19■□□□□ 0.02
CPSF3-204ENST00000489403 JAG1P78504 1218 aa15.19■□□□□ 0.02
CPSF3-204ENST00000489403 MTMR2Q13614 643 aa15.19■□□□□ 0.02
CPSF3-204ENST00000489403 SHROOM1Q2M3G4 852 aaPredicted RBP15.19■□□□□ 0.02
CPSF3-204ENST00000489403 METTL16Q86W50 562 aaKnown RBP15.19■□□□□ 0.02
CPSF3-204ENST00000489403 WDR18Q9BV38 432 aa15.19■□□□□ 0.02
CPSF3-204ENST00000489403 PIH1D3Q9NQM4 214 aaKnown RBP15.19■□□□□ 0.02
CPSF3-204ENST00000489403 PAK6Q9NQU5 681 aaPredicted RBP15.19■□□□□ 0.02
CPSF3-204ENST00000489403 DBNLQ9UJU6 430 aaKnown RBP15.19■□□□□ 0.02
CPSF3-204ENST00000489403 NOP58Q9Y2X3 529 aaKnown RBP15.19■□□□□ 0.02
CPSF3-204ENST00000489403 ZBTB7BO15156 539 aaPredicted RBP15.18■□□□□ 0.02
CPSF3-204ENST00000489403 GDF11O95390 407 aa15.18■□□□□ 0.02
CPSF3-204ENST00000489403 ASNSP08243 561 aa15.18■□□□□ 0.02
CPSF3-204ENST00000489403 RLBP1P12271 317 aa15.18■□□□□ 0.02
CPSF3-204ENST00000489403 ITPRIPQ8IWB1 547 aa15.18■□□□□ 0.02
CPSF3-204ENST00000489403 FTSJ3Q8IY81 847 aaKnown RBP15.18■□□□□ 0.02
CPSF3-204ENST00000489403 DEFB118Q96PH6 123 aa15.18■□□□□ 0.02
CPSF3-204ENST00000489403 CCDC8Q9H0W5 538 aaPredicted RBP15.18■□□□□ 0.02
CPSF3-204ENST00000489403 PALD1Q9ULE6 856 aa15.18■□□□□ 0.02
CPSF3-204ENST00000489403 MYH1P12882 1939 aa15.17■□□□□ 0.02
CPSF3-204ENST00000489403 IGSF3O75054 1194 aa15.17■□□□□ 0.02
CPSF3-204ENST00000489403 TFRCP02786 760 aaKnown RBP15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms