RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 BCRP11274 1271 aa15.02■□□□□ -0
SDC3-204ENST00000487984 PSMC4P43686 418 aa15.02■□□□□ -0
SDC3-204ENST00000487984 RRP1BQ14684 758 aaKnown RBP15.02■□□□□ -0
SDC3-204ENST00000487984 MAPKAPK5Q8IW41 473 aa15.02■□□□□ -0
SDC3-204ENST00000487984 RHPN1Q8TCX5 695 aa15.02■□□□□ -0
SDC3-204ENST00000487984 TRIM47Q96LD4 638 aa15.02■□□□□ -0
SDC3-204ENST00000487984 ZBTB40Q9NUA8 1239 aa15.02■□□□□ -0
SDC3-204ENST00000487984 RCAN3Q9UKA8 241 aa15.02■□□□□ -0
SDC3-204ENST00000487984 DDX19BQ9UMR2 479 aa15.02■□□□□ -0
SDC3-204ENST00000487984 BRCA2P51587 3418 aa15.02□□□□□ -0.01
SDC3-204ENST00000487984 DOCK1Q14185 1865 aa15.01□□□□□ -0.01
SDC3-204ENST00000487984 ZSWIM8A7E2V4 1837 aa15.01□□□□□ -0.01
SDC3-204ENST00000487984 IDH1O75874 414 aaKnown RBP15.01□□□□□ -0.01
SDC3-204ENST00000487984 CYP7A1P22680 504 aa15.01□□□□□ -0.01
SDC3-204ENST00000487984 CAP2P40123 477 aa15.01□□□□□ -0.01
SDC3-204ENST00000487984 DYNLL1P63167 89 aaKnown RBP15.01□□□□□ -0.01
SDC3-204ENST00000487984 HSP90AB4PQ58FF6 505 aa15.01□□□□□ -0.01
SDC3-204ENST00000487984 NBPF11Q86T75 865 aa15.01□□□□□ -0.01
SDC3-204ENST00000487984 SIRT2Q8IXJ6 389 aa15.01□□□□□ -0.01
SDC3-204ENST00000487984 DHX36Q9H2U1 1008 aaKnown RBP15.01□□□□□ -0.01
SDC3-204ENST00000487984 ANTXR1Q9H6X2 564 aa15.01□□□□□ -0.01
SDC3-204ENST00000487984 IL1RAPL2Q9NP60 686 aa15.01□□□□□ -0.01
SDC3-204ENST00000487984 PI4KBQ9UBF8 816 aa15.01□□□□□ -0.01
SDC3-204ENST00000487984 HERC5Q9UII4 1024 aaKnown RBP15.01□□□□□ -0.01
SDC3-204ENST00000487984 SLC45A1Q9Y2W3 748 aa15.01□□□□□ -0.01
SDC3-204ENST00000487984 FMNL1O95466 1100 aaPredicted RBP15□□□□□ -0.01
SDC3-204ENST00000487984 OSBPP22059 807 aa15□□□□□ -0.01
SDC3-204ENST00000487984 PRMT2P55345 433 aa15□□□□□ -0.01
SDC3-204ENST00000487984 RPAP2Q8IXW5 612 aaPredicted RBP15□□□□□ -0.01
SDC3-204ENST00000487984 SH3TC2Q8TF17 1288 aa15□□□□□ -0.01
SDC3-204ENST00000487984 DNAJC18Q9H819 358 aa15□□□□□ -0.01
SDC3-204ENST00000487984 SRRDQ9UH36 339 aa15□□□□□ -0.01
SDC3-204ENST00000487984 AGTPBP1Q9UPW5 1226 aa15□□□□□ -0.01
SDC3-204ENST00000487984 KIAA0100Q14667 2235 aaKnown RBP14.99□□□□□ -0.01
SDC3-204ENST00000487984 APBB1O00213 710 aa14.99□□□□□ -0.01
SDC3-204ENST00000487984 HMMRO75330 724 aa14.99□□□□□ -0.01
SDC3-204ENST00000487984 EN2P19622 333 aaPredicted RBP14.99□□□□□ -0.01
SDC3-204ENST00000487984 SPP2Q13103 211 aa14.99□□□□□ -0.01
SDC3-204ENST00000487984 TREML2Q5T2D2 321 aa14.99□□□□□ -0.01
SDC3-204ENST00000487984 METTL16Q86W50 562 aaKnown RBP14.99□□□□□ -0.01
SDC3-204ENST00000487984 MAGEB6Q8N7X4 407 aa14.99□□□□□ -0.01
SDC3-204ENST00000487984 MIGA1Q8NAN2 632 aa14.99□□□□□ -0.01
SDC3-204ENST00000487984 ZNF280CQ8ND82 737 aa14.99□□□□□ -0.01
SDC3-204ENST00000487984 TMEM106CQ9BVX2 250 aa14.99□□□□□ -0.01
SDC3-204ENST00000487984 SAP30BPQ9UHR5 308 aaKnown RBP14.99□□□□□ -0.01
SDC3-204ENST00000487984 PALD1Q9ULE6 856 aa14.99□□□□□ -0.01
SDC3-204ENST00000487984 MKI67P46013 3256 aaKnown RBP14.99□□□□□ -0.01
SDC3-204ENST00000487984 USP17L5A8MUK1 530 aa14.98□□□□□ -0.01
SDC3-204ENST00000487984 MYCP01106 439 aaPredicted RBP14.98□□□□□ -0.01
SDC3-204ENST00000487984 HOXD10P28358 340 aa14.98□□□□□ -0.01
SDC3-204ENST00000487984 MAP3K12Q12852 859 aa14.98□□□□□ -0.01
SDC3-204ENST00000487984 PRPF38BQ5VTL8 546 aaKnown RBP14.98□□□□□ -0.01
SDC3-204ENST00000487984 CLASRPQ8N2M8 674 aaKnown RBP14.98□□□□□ -0.01
SDC3-204ENST00000487984 PROCA1Q8NCQ7 364 aaPredicted RBP14.98□□□□□ -0.01
SDC3-204ENST00000487984 SMCR8Q8TEV9 937 aaPredicted RBP14.98□□□□□ -0.01
SDC3-204ENST00000487984 KIF1BPQ96EK5 621 aa14.98□□□□□ -0.01
SDC3-204ENST00000487984 TBC1D2Q9BYX2 928 aa14.98□□□□□ -0.01
SDC3-204ENST00000487984 PHIPQ8WWQ0 1821 aa14.98□□□□□ -0.01
SDC3-204ENST00000487984 MYPNQ86TC9 1320 aa14.97□□□□□ -0.01
SDC3-204ENST00000487984 HMGCS2P54868 508 aa14.97□□□□□ -0.01
SDC3-204ENST00000487984 FCGRTP55899 365 aa14.97□□□□□ -0.01
SDC3-204ENST00000487984 JAG1P78504 1218 aa14.97□□□□□ -0.01
SDC3-204ENST00000487984 SHROOM1Q2M3G4 852 aaPredicted RBP14.97□□□□□ -0.01
SDC3-204ENST00000487984 SLC4A8Q2Y0W8 1093 aa14.97□□□□□ -0.01
SDC3-204ENST00000487984 C20orf194Q5TEA3 1177 aa14.97□□□□□ -0.01
SDC3-204ENST00000487984 FOXP4Q8IVH2 680 aaPredicted RBP14.97□□□□□ -0.01
SDC3-204ENST00000487984 CRACR2BQ8N4Y2 399 aaPredicted RBP14.97□□□□□ -0.01
SDC3-204ENST00000487984 RAET1EQ8TD07 263 aa14.97□□□□□ -0.01
SDC3-204ENST00000487984 TRIM34Q9BYJ4 488 aa14.97□□□□□ -0.01
SDC3-204ENST00000487984 SIPA1L1O43166 1804 aa14.96□□□□□ -0.01
SDC3-204ENST00000487984 GDF11O95390 407 aa14.96□□□□□ -0.01
SDC3-204ENST00000487984 HLA-DOAP06340 250 aa14.96□□□□□ -0.01
SDC3-204ENST00000487984 IFIT2P09913 472 aaKnown RBP14.96□□□□□ -0.01
SDC3-204ENST00000487984 PRKCZQ05513 592 aa14.96□□□□□ -0.01
SDC3-204ENST00000487984 SH3D19Q5HYK7 790 aa14.96□□□□□ -0.01
SDC3-204ENST00000487984 TMED8Q6PL24 325 aaPredicted RBP14.96□□□□□ -0.01
SDC3-204ENST00000487984 CERS3Q8IU89 383 aa14.96□□□□□ -0.01
SDC3-204ENST00000487984 CHMP4BQ9H444 224 aaKnown RBP14.96□□□□□ -0.01
SDC3-204ENST00000487984 AS3MTQ9HBK9 375 aa14.96□□□□□ -0.01
SDC3-204ENST00000487984 PNMA3Q9UL41 463 aa14.96□□□□□ -0.01
SDC3-204ENST00000487984 MYO5AQ9Y4I1 1855 aaKnown RBP14.96□□□□□ -0.01
SDC3-204ENST00000487984 PTPRFP10586 1907 aa14.96□□□□□ -0.02
SDC3-204ENST00000487984 RBBP6Q7Z6E9 1792 aaKnown RBP14.96□□□□□ -0.02
SDC3-204ENST00000487984 RAB11FIP3O75154 756 aa14.95□□□□□ -0.02
SDC3-204ENST00000487984 SLC34A2O95436 690 aa14.95□□□□□ -0.02
SDC3-204ENST00000487984 ASNSP08243 561 aa14.95□□□□□ -0.02
SDC3-204ENST00000487984 GRK4P32298 578 aa14.95□□□□□ -0.02
SDC3-204ENST00000487984 USP5P45974 858 aa14.95□□□□□ -0.02
SDC3-204ENST00000487984 MTMR2Q13614 643 aa14.95□□□□□ -0.02
SDC3-204ENST00000487984 TTF1Q15361 905 aaPredicted RBP14.95□□□□□ -0.02
SDC3-204ENST00000487984 ANKRD13CQ8N6S4 541 aa14.95□□□□□ -0.02
SDC3-204ENST00000487984 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.95□□□□□ -0.02
SDC3-204ENST00000487984 YTHDC1Q96MU7 727 aaKnown RBP14.95□□□□□ -0.02
SDC3-204ENST00000487984 WDR18Q9BV38 432 aa14.95□□□□□ -0.02
SDC3-204ENST00000487984 BCL11AQ9H165 835 aa14.95□□□□□ -0.02
SDC3-204ENST00000487984 GABRQQ9UN88 632 aa14.95□□□□□ -0.02
SDC3-204ENST00000487984 GOLIM4O00461 696 aa14.94□□□□□ -0.02
SDC3-204ENST00000487984 PDE6AP16499 860 aa14.94□□□□□ -0.02
SDC3-204ENST00000487984 BACE1P56817 501 aa14.94□□□□□ -0.02
SDC3-204ENST00000487984 PDE3AQ14432 1141 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms