RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 FBRSQ9HAH7 460 aa7.05□□□□□ -1.28
VPS41-213ENST00000485955 VTI1BQ9UEU0 232 aa7.05□□□□□ -1.28
VPS41-213ENST00000485955 ZBTB7CA1YPR0 619 aa7.04□□□□□ -1.28
VPS41-213ENST00000485955 RBAK-RBAKDNI3L0D1 243 aa7.04□□□□□ -1.28
VPS41-213ENST00000485955 FAM214BQ7L5A3 538 aa7.04□□□□□ -1.28
VPS41-213ENST00000485955 PLD6Q8N2A8 252 aaKnown RBP7.04□□□□□ -1.28
VPS41-213ENST00000485955 PHC3Q8NDX5 983 aa7.04□□□□□ -1.28
VPS41-213ENST00000485955 GIPC2Q8TF65 315 aa7.04□□□□□ -1.28
VPS41-213ENST00000485955 CRELD1Q96HD1 420 aa7.04□□□□□ -1.28
VPS41-213ENST00000485955 HEXIM2Q96MH2 286 aaKnown RBP7.04□□□□□ -1.28
VPS41-213ENST00000485955 MRS2Q9HD23 443 aa7.04□□□□□ -1.28
VPS41-213ENST00000485955 BSDC1Q9NW68 430 aaPredicted RBP7.04□□□□□ -1.28
VPS41-213ENST00000485955 SNCAIPQ9Y6H5 919 aa7.04□□□□□ -1.28
VPS41-213ENST00000485955 SLBPQ14493 270 aaKnown RBP eCLIP7.03□□□□□ -1.28
VPS41-213ENST00000485955 NKG7Q16617 165 aa7.03□□□□□ -1.28
VPS41-213ENST00000485955 CDC37L1Q7L3B6 337 aa7.03□□□□□ -1.28
VPS41-213ENST00000485955 ZNF507Q8TCN5 953 aa7.03□□□□□ -1.28
VPS41-213ENST00000485955 JARID2Q92833 1246 aaPredicted RBP7.03□□□□□ -1.28
VPS41-213ENST00000485955 WNT10AQ9GZT5 417 aa7.03□□□□□ -1.28
VPS41-213ENST00000485955 MIR1-1HGQ9H1L0 117 aa7.03□□□□□ -1.28
VPS41-213ENST00000485955 PRDM10Q9NQV6 1147 aa7.03□□□□□ -1.28
VPS41-213ENST00000485955 HOMEZQ8IX15 550 aa7.02□□□□□ -1.29
VPS41-213ENST00000485955 CNTNAP4Q9C0A0 1308 aa7.01□□□□□ -1.29
VPS41-213ENST00000485955 RLBP1P12271 317 aa7.01□□□□□ -1.29
VPS41-213ENST00000485955 LMNB1P20700 586 aa7.01□□□□□ -1.29
VPS41-213ENST00000485955 GRK4P32298 578 aa7.01□□□□□ -1.29
VPS41-213ENST00000485955 OXCT1P55809 520 aa7.01□□□□□ -1.29
VPS41-213ENST00000485955 ETF1P62495 437 aaKnown RBP7.01□□□□□ -1.29
VPS41-213ENST00000485955 TMCO4Q5TGY1 634 aa7.01□□□□□ -1.29
VPS41-213ENST00000485955 ARMCX6Q7L4S7 300 aa7.01□□□□□ -1.29
VPS41-213ENST00000485955 SPRED2Q7Z698 418 aa7.01□□□□□ -1.29
VPS41-213ENST00000485955 WFDC3Q8IUB2 231 aa7.01□□□□□ -1.29
VPS41-213ENST00000485955 ANGEL1Q9UNK9 670 aaKnown RBP7.01□□□□□ -1.29
VPS41-213ENST00000485955 PLAGL2Q9UPG8 496 aa7.01□□□□□ -1.29
VPS41-213ENST00000485955 SLITRK5O94991 958 aa7□□□□□ -1.29
VPS41-213ENST00000485955 EOMESO95936 686 aa7□□□□□ -1.29
VPS41-213ENST00000485955 PF4P02776 101 aa7□□□□□ -1.29
VPS41-213ENST00000485955 BNIP3Q12983 259 aa7□□□□□ -1.29
VPS41-213ENST00000485955 CAMK2GQ13555 558 aaPredicted RBP7□□□□□ -1.29
VPS41-213ENST00000485955 TSNAXIP1Q2TAA8 658 aa7□□□□□ -1.29
VPS41-213ENST00000485955 BNC2Q6ZN30 1099 aaPredicted RBP7□□□□□ -1.29
VPS41-213ENST00000485955 ABI1Q8IZP0 508 aa7□□□□□ -1.29
VPS41-213ENST00000485955 KCT2Q8NC54 265 aa7□□□□□ -1.29
VPS41-213ENST00000485955 BCL7CQ8WUZ0 217 aaPredicted RBP7□□□□□ -1.29
VPS41-213ENST00000485955 FAM221AA4D161 298 aa6.99□□□□□ -1.29
VPS41-213ENST00000485955 LRIG2O94898 1065 aa6.99□□□□□ -1.29
VPS41-213ENST00000485955 RPL6Q02878 288 aaKnown RBP6.99□□□□□ -1.29
VPS41-213ENST00000485955 MRPL58Q14197 206 aaKnown RBP6.99□□□□□ -1.29
VPS41-213ENST00000485955 ZNF326Q5BKZ1 582 aaKnown RBP6.99□□□□□ -1.29
VPS41-213ENST00000485955 VSIG10LQ86VR7 867 aa6.99□□□□□ -1.29
VPS41-213ENST00000485955 RIN3Q8TB24 985 aa6.99□□□□□ -1.29
VPS41-213ENST00000485955 NETO1Q8TDF5 533 aa6.99□□□□□ -1.29
VPS41-213ENST00000485955 RSRP1Q9BUV0 290 aa6.99□□□□□ -1.29
VPS41-213ENST00000485955 FOXQ1Q9C009 403 aa6.99□□□□□ -1.29
VPS41-213ENST00000485955 PAK6Q9NQU5 681 aaPredicted RBP6.99□□□□□ -1.29
VPS41-213ENST00000485955 MINDY4BA8MYZ0 360 aa6.98□□□□□ -1.29
VPS41-213ENST00000485955 F13A1P00488 732 aa6.98□□□□□ -1.29
VPS41-213ENST00000485955 ZNF16P17020 682 aaPredicted RBP6.98□□□□□ -1.29
VPS41-213ENST00000485955 GBP2P32456 591 aaPredicted RBP6.98□□□□□ -1.29
VPS41-213ENST00000485955 CAP2P40123 477 aa6.98□□□□□ -1.29
VPS41-213ENST00000485955 CD96P40200 585 aa6.98□□□□□ -1.29
VPS41-213ENST00000485955 LMNB2Q03252 620 aa6.98□□□□□ -1.29
VPS41-213ENST00000485955 ZNF574Q6ZN55 896 aaPredicted RBP6.98□□□□□ -1.29
VPS41-213ENST00000485955 HID1Q8IV36 788 aa6.98□□□□□ -1.29
VPS41-213ENST00000485955 RHOVQ96L33 236 aa6.98□□□□□ -1.29
VPS41-213ENST00000485955 TMEM74Q96NL1 305 aa6.98□□□□□ -1.29
VPS41-213ENST00000485955 COPRSQ9NQ92 184 aa6.98□□□□□ -1.29
VPS41-213ENST00000485955 TJP2Q9UDY2 1190 aa6.98□□□□□ -1.29
VPS41-213ENST00000485955 ADGRE2Q9UHX3 823 aa6.98□□□□□ -1.29
VPS41-213ENST00000485955 CORINQ9Y5Q5 1042 aa6.98□□□□□ -1.29
VPS41-213ENST00000485955 CILPO75339 1184 aa6.97□□□□□ -1.29
VPS41-213ENST00000485955 ITIH2P19823 946 aa6.97□□□□□ -1.29
VPS41-213ENST00000485955 MFAP1P55081 439 aaKnown RBP6.97□□□□□ -1.29
VPS41-213ENST00000485955 LDLRAD1Q5T700 205 aa6.97□□□□□ -1.29
VPS41-213ENST00000485955 PRAMEF13Q5VWM6 474 aa6.97□□□□□ -1.29
VPS41-213ENST00000485955 CCDC84Q86UT8 332 aaPredicted RBP6.97□□□□□ -1.29
VPS41-213ENST00000485955 RELL1Q8IUW5 271 aa6.97□□□□□ -1.29
VPS41-213ENST00000485955 TP53INP2Q8IXH6 220 aa6.97□□□□□ -1.29
VPS41-213ENST00000485955 FLCNQ8NFG4 579 aa6.97□□□□□ -1.29
VPS41-213ENST00000485955 MKNK2Q9HBH9 465 aa6.97□□□□□ -1.29
VPS41-213ENST00000485955 SLC5A6Q9Y289 635 aa6.97□□□□□ -1.29
VPS41-213ENST00000485955 TACC3Q9Y6A5 838 aa6.97□□□□□ -1.29
VPS41-213ENST00000485955 COL17A1Q9UMD9 1497 aaPredicted RBP6.97□□□□□ -1.29
VPS41-213ENST00000485955 IGF2BP3O00425 579 aaKnown RBP eCLIP6.96□□□□□ -1.3
VPS41-213ENST00000485955 PGRP06401 933 aa6.96□□□□□ -1.3
VPS41-213ENST00000485955 CEACAM5P06731 702 aa6.96□□□□□ -1.3
VPS41-213ENST00000485955 IRAK1P51617 712 aa6.96□□□□□ -1.3
VPS41-213ENST00000485955 FAM160A1Q05DH4 1040 aa6.96□□□□□ -1.3
VPS41-213ENST00000485955 IFI16Q16666 785 aaKnown RBP6.96□□□□□ -1.3
VPS41-213ENST00000485955 ARHGAP27Q6ZUM4 889 aa6.96□□□□□ -1.3
VPS41-213ENST00000485955 ERMP1Q7Z2K6 904 aa6.96□□□□□ -1.3
VPS41-213ENST00000485955 XAGE3Q8WTP9 111 aa6.96□□□□□ -1.3
VPS41-213ENST00000485955 GATAD2BQ8WXI9 593 aa6.96□□□□□ -1.3
VPS41-213ENST00000485955 FBXL18Q96ME1 805 aa6.96□□□□□ -1.3
VPS41-213ENST00000485955 MIPEPQ99797 713 aa6.96□□□□□ -1.3
VPS41-213ENST00000485955 DPH2Q9BQC3 489 aaPredicted RBP6.96□□□□□ -1.3
VPS41-213ENST00000485955 TNKS2Q9H2K2 1166 aa6.96□□□□□ -1.3
VPS41-213ENST00000485955 KBTBD4Q9NVX7 518 aa6.96□□□□□ -1.3
VPS41-213ENST00000485955 GTF2IRD1Q9UHL9 959 aa6.96□□□□□ -1.3
VPS41-213ENST00000485955 PRR33A8MZF0 331 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms