RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 NAA15Q9BXJ9 866 aaKnown RBP15.18■□□□□ 0.02
USP40-214ENST00000483519 VPS18Q9P253 973 aa15.18■□□□□ 0.02
USP40-214ENST00000483519 RGPD5Q99666 1765 aa15.17■□□□□ 0.02
USP40-214ENST00000483519 ANTXR2P58335 489 aa15.17■□□□□ 0.02
USP40-214ENST00000483519 TRIM29Q14134 588 aa15.17■□□□□ 0.02
USP40-214ENST00000483519 WASHC4Q2M389 1173 aa15.17■□□□□ 0.02
USP40-214ENST00000483519 BEND6Q5SZJ8 279 aaPredicted RBP15.17■□□□□ 0.02
USP40-214ENST00000483519 PANX2Q96RD6 677 aa15.17■□□□□ 0.02
USP40-214ENST00000483519 CDC23Q9UJX2 597 aa15.17■□□□□ 0.02
USP40-214ENST00000483519 RAB21Q9UL25 225 aa15.17■□□□□ 0.02
USP40-214ENST00000483519 AKR1B15C9JRZ8 316 aaPredicted RBP15.17■□□□□ 0.02
USP40-214ENST00000483519 FGAP02671 866 aa15.17■□□□□ 0.02
USP40-214ENST00000483519 SNRPA1P09661 255 aaKnown RBP15.17■□□□□ 0.02
USP40-214ENST00000483519 CDC27P30260 824 aa15.17■□□□□ 0.02
USP40-214ENST00000483519 MCM6Q14566 821 aa15.17■□□□□ 0.02
USP40-214ENST00000483519 TTC39AQ5SRH9 613 aa15.17■□□□□ 0.02
USP40-214ENST00000483519 FOXP4Q8IVH2 680 aaPredicted RBP15.17■□□□□ 0.02
USP40-214ENST00000483519 MSANTD4Q8NCY6 345 aa15.17■□□□□ 0.02
USP40-214ENST00000483519 CLIC6Q96NY7 704 aa15.17■□□□□ 0.02
USP40-214ENST00000483519 PDE11AQ9HCR9 933 aa15.17■□□□□ 0.02
USP40-214ENST00000483519 ZNF213O14771 459 aa15.16■□□□□ 0.02
USP40-214ENST00000483519 BMP6P22004 513 aa15.16■□□□□ 0.02
USP40-214ENST00000483519 METAP2P50579 478 aaKnown RBP eCLIP15.16■□□□□ 0.02
USP40-214ENST00000483519 FOXO4P98177 505 aa15.16■□□□□ 0.02
USP40-214ENST00000483519 HSP90AA4PQ58FG1 418 aa15.16■□□□□ 0.02
USP40-214ENST00000483519 CARD10Q9BWT7 1032 aa15.16■□□□□ 0.02
USP40-214ENST00000483519 GBP3Q9H0R5 595 aa15.16■□□□□ 0.02
USP40-214ENST00000483519 ANKZF1Q9H8Y5 726 aa15.16■□□□□ 0.02
USP40-214ENST00000483519 MRPL44Q9H9J2 332 aaKnown RBP15.16■□□□□ 0.02
USP40-214ENST00000483519 NLRP2Q9NX02 1062 aa15.16■□□□□ 0.02
USP40-214ENST00000483519 LCMT1Q9UIC8 334 aa15.16■□□□□ 0.02
USP40-214ENST00000483519 MAN1B1Q9UKM7 699 aa15.16■□□□□ 0.02
USP40-214ENST00000483519 A0A1B0GUL7 405 aa15.16■□□□□ 0.02
USP40-214ENST00000483519 TRDNQ13061 729 aa15.16■□□□□ 0.02
USP40-214ENST00000483519 POSTNQ15063 836 aa15.16■□□□□ 0.02
USP40-214ENST00000483519 KRI1Q8N9T8 703 aaKnown RBP15.16■□□□□ 0.02
USP40-214ENST00000483519 TRIML1Q8N9V2 468 aa15.16■□□□□ 0.02
USP40-214ENST00000483519 ZSWIM4Q9H7M6 989 aa15.16■□□□□ 0.02
USP40-214ENST00000483519 ATG3Q9NT62 314 aa15.16■□□□□ 0.02
USP40-214ENST00000483519 THRAP3Q9Y2W1 955 aaKnown RBP15.16■□□□□ 0.02
USP40-214ENST00000483519 SPATA31A5Q5VU36 1347 aa15.16■□□□□ 0.02
USP40-214ENST00000483519 SPATA31A7Q8IWB4 1347 aa15.16■□□□□ 0.02
USP40-214ENST00000483519 TRIM66O15016 1216 aa15.16■□□□□ 0.02
USP40-214ENST00000483519 RPS6KA5O75582 802 aa15.16■□□□□ 0.02
USP40-214ENST00000483519 PLBD2Q8NHP8 589 aa15.16■□□□□ 0.02
USP40-214ENST00000483519 ZNF496Q96IT1 587 aaPredicted RBP15.16■□□□□ 0.02
USP40-214ENST00000483519 GJD4Q96KN9 370 aaPredicted RBP15.16■□□□□ 0.02
USP40-214ENST00000483519 ANGEL1Q9UNK9 670 aaKnown RBP15.16■□□□□ 0.02
USP40-214ENST00000483519 LAMB4A4D0S4 1761 aa15.15■□□□□ 0.02
USP40-214ENST00000483519 FOXP2O15409 715 aa15.15■□□□□ 0.02
USP40-214ENST00000483519 TUBBP07437 444 aa15.15■□□□□ 0.02
USP40-214ENST00000483519 MDM2Q00987 491 aaPredicted RBP15.15■□□□□ 0.02
USP40-214ENST00000483519 FKBP4Q02790 459 aaKnown RBP eCLIP15.15■□□□□ 0.02
USP40-214ENST00000483519 NT5DC1Q5TFE4 455 aa15.15■□□□□ 0.02
USP40-214ENST00000483519 TTC5Q8N0Z6 440 aa15.15■□□□□ 0.02
USP40-214ENST00000483519 AIFM3Q96NN9 605 aa15.15■□□□□ 0.02
USP40-214ENST00000483519 LZTFL1Q9NQ48 299 aa15.15■□□□□ 0.02
USP40-214ENST00000483519 PUF60Q9UHX1 559 aaKnown RBP15.15■□□□□ 0.02
USP40-214ENST00000483519 EYA2O00167 538 aa15.15■□□□□ 0.02
USP40-214ENST00000483519 HSP90B2PQ58FF3 399 aa15.15■□□□□ 0.02
USP40-214ENST00000483519 APPBP2Q92624 585 aa15.15■□□□□ 0.02
USP40-214ENST00000483519 ACBD3Q9H3P7 528 aa15.15■□□□□ 0.02
USP40-214ENST00000483519 RGS17Q9UGC6 210 aaPredicted RBP15.15■□□□□ 0.02
USP40-214ENST00000483519 ADGRG1Q9Y653 693 aa15.15■□□□□ 0.02
USP40-214ENST00000483519 SPATA31A1Q5TZJ5 1347 aa15.14■□□□□ 0.01
USP40-214ENST00000483519 RXRBP28702 533 aa15.14■□□□□ 0.01
USP40-214ENST00000483519 FMR1Q06787 632 aaKnown RBP eCLIP15.14■□□□□ 0.01
USP40-214ENST00000483519 NR1I3Q14994 352 aa15.14■□□□□ 0.01
USP40-214ENST00000483519 PPFIBP1Q86W92 1011 aa15.14■□□□□ 0.01
USP40-214ENST00000483519 CTAGE9A4FU28 777 aa15.14■□□□□ 0.01
USP40-214ENST00000483519 SOWAHDA6NJG2 315 aa15.14■□□□□ 0.01
USP40-214ENST00000483519 H7C1W4 665 aa15.14■□□□□ 0.01
USP40-214ENST00000483519 CIAO1O76071 339 aa15.14■□□□□ 0.01
USP40-214ENST00000483519 MORC3Q14149 939 aa15.14■□□□□ 0.01
USP40-214ENST00000483519 MTF1Q14872 753 aa15.14■□□□□ 0.01
USP40-214ENST00000483519 CDCA7Q9BWT1 371 aaPredicted RBP15.14■□□□□ 0.01
USP40-214ENST00000483519 MKRN1Q9UHC7 482 aaKnown RBP15.14■□□□□ 0.01
USP40-214ENST00000483519 L1RE1Q9UN81 338 aa15.14■□□□□ 0.01
USP40-214ENST00000483519 PAPPAQ13219 1627 aa15.14■□□□□ 0.01
USP40-214ENST00000483519 KDM6AO15550 1401 aaPredicted RBP15.13■□□□□ 0.01
USP40-214ENST00000483519 A0A1B0GTH6 734 aa15.13■□□□□ 0.01
USP40-214ENST00000483519 PIP4K2AP48426 406 aaPredicted RBP15.13■□□□□ 0.01
USP40-214ENST00000483519 PLCD3Q8N3E9 789 aa15.13■□□□□ 0.01
USP40-214ENST00000483519 FAM71BQ8TC56 605 aa15.13■□□□□ 0.01
USP40-214ENST00000483519 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.13■□□□□ 0.01
USP40-214ENST00000483519 IRX2Q9BZI1 471 aaPredicted RBP15.13■□□□□ 0.01
USP40-214ENST00000483519 FOXN1O15353 648 aa15.13■□□□□ 0.01
USP40-214ENST00000483519 KIF4BQ2VIQ3 1234 aa15.13■□□□□ 0.01
USP40-214ENST00000483519 KANK3Q6NY19 840 aa15.13■□□□□ 0.01
USP40-214ENST00000483519 TRMT44Q8IYL2 757 aaKnown RBP15.13■□□□□ 0.01
USP40-214ENST00000483519 PNKPQ96T60 521 aa15.13■□□□□ 0.01
USP40-214ENST00000483519 ERCC5P28715 1186 aaPredicted RBP15.12■□□□□ 0.01
USP40-214ENST00000483519 IARSP41252 1262 aaKnown RBP15.12■□□□□ 0.01
USP40-214ENST00000483519 SARSP49591 514 aaKnown RBP15.12■□□□□ 0.01
USP40-214ENST00000483519 PLCD1P51178 756 aa15.12■□□□□ 0.01
USP40-214ENST00000483519 BARGINQ6ZT62 677 aa15.12■□□□□ 0.01
USP40-214ENST00000483519 ECM29Q5VYK3 1845 aa15.12■□□□□ 0.01
USP40-214ENST00000483519 LRRC24Q50LG9 513 aa15.12■□□□□ 0.01
USP40-214ENST00000483519 ZNF569Q5MCW4 686 aa15.12■□□□□ 0.01
USP40-214ENST00000483519 RAPGEF4Q8WZA2 1011 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms