RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 MPP2Q14168 576 aa5.56□□□□□ -1.52
VPS41-212ENST00000482217 KIAA1211Q6ZU35 1233 aa5.56□□□□□ -1.52
VPS41-212ENST00000482217 VPS37DQ86XT2 251 aa5.56□□□□□ -1.52
VPS41-212ENST00000482217 AGGF1Q8N302 714 aaeCLIP5.56□□□□□ -1.523e-7■■■□□ 16.4
VPS41-212ENST00000482217 NME8Q8N427 588 aa5.56□□□□□ -1.52
VPS41-212ENST00000482217 GPBAR1Q8TDU6 330 aa5.56□□□□□ -1.52
VPS41-212ENST00000482217 UBASH3BQ8TF42 649 aa5.56□□□□□ -1.52
VPS41-212ENST00000482217 ACSBG1Q96GR2 724 aa5.56□□□□□ -1.52
VPS41-212ENST00000482217 EAF1Q96JC9 268 aaPredicted RBP5.56□□□□□ -1.52
VPS41-212ENST00000482217 DNAJC2Q99543 621 aaKnown RBP5.56□□□□□ -1.52
VPS41-212ENST00000482217 LRRC3Q9BY71 257 aa5.56□□□□□ -1.52
VPS41-212ENST00000482217 TMPRSS13Q9BYE2 586 aa5.56□□□□□ -1.52
VPS41-212ENST00000482217 ZC3H12CQ9C0D7 883 aaKnown RBP5.56□□□□□ -1.52
VPS41-212ENST00000482217 GSC2O15499 205 aa5.55□□□□□ -1.52
VPS41-212ENST00000482217 DHX15O43143 795 aaKnown RBP5.55□□□□□ -1.52
VPS41-212ENST00000482217 ZNF862O60290 1169 aa5.55□□□□□ -1.52
VPS41-212ENST00000482217 CILPO75339 1184 aa5.55□□□□□ -1.52
VPS41-212ENST00000482217 F13A1P00488 732 aa5.55□□□□□ -1.52
VPS41-212ENST00000482217 SLFN14P0C7P3 912 aa5.55□□□□□ -1.52
VPS41-212ENST00000482217 TNNI2P48788 182 aa5.55□□□□□ -1.52
VPS41-212ENST00000482217 RPL6Q02878 288 aaKnown RBP5.55□□□□□ -1.52
VPS41-212ENST00000482217 COL9A2Q14055 689 aaPredicted RBP5.55□□□□□ -1.52
VPS41-212ENST00000482217 SF3A1Q15459 793 aaKnown RBP5.55□□□□□ -1.52
VPS41-212ENST00000482217 ZMYM1Q5SVZ6 1142 aa5.55□□□□□ -1.52
VPS41-212ENST00000482217 BNC2Q6ZN30 1099 aaPredicted RBP5.55□□□□□ -1.52
VPS41-212ENST00000482217 JARID2Q92833 1246 aaPredicted RBP5.55□□□□□ -1.52
VPS41-212ENST00000482217 GMLQ99445 158 aa5.55□□□□□ -1.52
VPS41-212ENST00000482217 RUSC1Q9BVN2 902 aa5.55□□□□□ -1.52
VPS41-212ENST00000482217 SUGCTQ9HAC7 445 aa5.55□□□□□ -1.52
VPS41-212ENST00000482217 CYP4F12Q9HCS2 524 aa5.55□□□□□ -1.52
VPS41-212ENST00000482217 SNCAIPQ9Y6H5 919 aa5.55□□□□□ -1.52
VPS41-212ENST00000482217 AOC2O75106 756 aa5.54□□□□□ -1.52
VPS41-212ENST00000482217 PPFIA4O75335 1185 aa5.54□□□□□ -1.52
VPS41-212ENST00000482217 BPNT1O95861 308 aa5.54□□□□□ -1.52
VPS41-212ENST00000482217 DLGAP3O95886 979 aa5.54□□□□□ -1.52
VPS41-212ENST00000482217 LIG1P18858 919 aa5.54□□□□□ -1.52
VPS41-212ENST00000482217 PTMSP20962 102 aa5.54□□□□□ -1.52
VPS41-212ENST00000482217 PTPN11Q06124 597 aaPredicted RBP5.54□□□□□ -1.52
VPS41-212ENST00000482217 APOBRQ0VD83 1088 aa5.54□□□□□ -1.52
VPS41-212ENST00000482217 RALBP1Q15311 655 aa5.54□□□□□ -1.52
VPS41-212ENST00000482217 CWF19L2Q2TBE0 894 aaKnown RBP5.54□□□□□ -1.52
VPS41-212ENST00000482217 MPRIPQ6WCQ1 1025 aa5.54□□□□□ -1.52
VPS41-212ENST00000482217 SLITRK4Q8IW52 837 aa5.54□□□□□ -1.52
VPS41-212ENST00000482217 SMG8Q8ND04 991 aaKnown RBP5.54□□□□□ -1.52
VPS41-212ENST00000482217 MORC4Q8TE76 937 aa5.54□□□□□ -1.52
VPS41-212ENST00000482217 NKD1Q969G9 470 aa5.54□□□□□ -1.52
VPS41-212ENST00000482217 FAM46AQ96IP4 442 aaKnown RBP5.54□□□□□ -1.52
VPS41-212ENST00000482217 SEC16BQ96JE7 1060 aa5.54□□□□□ -1.52
VPS41-212ENST00000482217 WDR18Q9BV38 432 aa5.54□□□□□ -1.52
VPS41-212ENST00000482217 LNPKQ9C0E8 428 aa5.54□□□□□ -1.52
VPS41-212ENST00000482217 RAD18Q9NS91 495 aa5.54□□□□□ -1.52
VPS41-212ENST00000482217 PCDHA4Q9UN74 947 aa5.54□□□□□ -1.52
VPS41-212ENST00000482217 HIF3AQ9Y2N7 669 aa5.54□□□□□ -1.52
VPS41-212ENST00000482217 TACC3Q9Y6A5 838 aa5.54□□□□□ -1.52
VPS41-212ENST00000482217 SART1O43290 800 aaKnown RBP5.53□□□□□ -1.52
VPS41-212ENST00000482217 ARID5AQ03989 594 aa5.53□□□□□ -1.52
VPS41-212ENST00000482217 NUTM2GQ5VZR2 741 aa5.53□□□□□ -1.52
VPS41-212ENST00000482217 EGFLAMQ63HQ2 1017 aa5.53□□□□□ -1.52
VPS41-212ENST00000482217 FDX2Q6P4F2 183 aa5.53□□□□□ -1.52
VPS41-212ENST00000482217 HDXQ7Z353 690 aa5.53□□□□□ -1.52
VPS41-212ENST00000482217 UTP4Q969X6 686 aaKnown RBP5.53□□□□□ -1.52
VPS41-212ENST00000482217 MYRFLQ96LU7 910 aa5.53□□□□□ -1.52
VPS41-212ENST00000482217 UBL7Q96S82 380 aaPredicted RBP5.53□□□□□ -1.52
VPS41-212ENST00000482217 UBP1Q9NZI7 540 aa5.53□□□□□ -1.52
VPS41-212ENST00000482217 RAXQ9Y2V3 346 aa5.53□□□□□ -1.52
VPS41-212ENST00000482217 PCDHGC5Q9Y5F6 944 aa5.53□□□□□ -1.52
VPS41-212ENST00000482217 ATF4P18848 351 aaPredicted RBP5.52□□□□□ -1.53
VPS41-212ENST00000482217 CRKP46108 304 aa5.52□□□□□ -1.53
VPS41-212ENST00000482217 SOX9P48436 509 aa5.52□□□□□ -1.53
VPS41-212ENST00000482217 ERVK-24P63145 666 aa5.52□□□□□ -1.53
VPS41-212ENST00000482217 FOXD4Q12950 439 aaPredicted RBP5.52□□□□□ -1.53
VPS41-212ENST00000482217 ZC3H12AQ5D1E8 599 aaKnown RBP5.52□□□□□ -1.53
VPS41-212ENST00000482217 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.52□□□□□ -1.53
VPS41-212ENST00000482217 REC114Q7Z4M0 266 aa5.52□□□□□ -1.53
VPS41-212ENST00000482217 REXO1Q8N1G1 1221 aaKnown RBP5.52□□□□□ -1.53
VPS41-212ENST00000482217 PMM1Q92871 262 aa5.52□□□□□ -1.53
VPS41-212ENST00000482217 WDR89Q96FK6 387 aaPredicted RBP5.52□□□□□ -1.53
VPS41-212ENST00000482217 STOML1Q9UBI4 398 aa5.52□□□□□ -1.53
VPS41-212ENST00000482217 GFRA2O00451 464 aa5.51□□□□□ -1.53
VPS41-212ENST00000482217 TLR3O15455 904 aaKnown RBP5.51□□□□□ -1.53
VPS41-212ENST00000482217 TIAF1O95411 115 aa5.51□□□□□ -1.53
VPS41-212ENST00000482217 FSTP19883 344 aa5.51□□□□□ -1.53
VPS41-212ENST00000482217 ZNF165P49910 485 aa5.51□□□□□ -1.53
VPS41-212ENST00000482217 ID3Q02535 119 aa5.51□□□□□ -1.53
VPS41-212ENST00000482217 INPP5AQ14642 412 aa5.51□□□□□ -1.53
VPS41-212ENST00000482217 SEZ6Q53EL9 994 aa5.51□□□□□ -1.53
VPS41-212ENST00000482217 WIPI1Q5MNZ9 446 aaPredicted RBP5.51□□□□□ -1.53
VPS41-212ENST00000482217 LRFN4Q6PJG9 635 aa5.51□□□□□ -1.53
VPS41-212ENST00000482217 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.51□□□□□ -1.53
VPS41-212ENST00000482217 NOP9Q86U38 636 aaKnown RBP5.51□□□□□ -1.53
VPS41-212ENST00000482217 SMC5Q8IY18 1101 aa5.51□□□□□ -1.53
VPS41-212ENST00000482217 ARMC10Q8N2F6 343 aa5.51□□□□□ -1.53
VPS41-212ENST00000482217 NLGN1Q8N2Q7 840 aa5.51□□□□□ -1.53
VPS41-212ENST00000482217 Q8N3U1 123 aa5.51□□□□□ -1.53
VPS41-212ENST00000482217 FBXO27Q8NI29 283 aa5.51□□□□□ -1.53
VPS41-212ENST00000482217 ELMO3Q96BJ8 720 aa5.51□□□□□ -1.53
VPS41-212ENST00000482217 PLPPR2Q96GM1 343 aa5.51□□□□□ -1.53
VPS41-212ENST00000482217 GINM1Q9NU53 330 aa5.51□□□□□ -1.53
VPS41-212ENST00000482217 CRIM1Q9NZV1 1036 aa5.51□□□□□ -1.53
VPS41-212ENST00000482217 STRIP2Q9ULQ0 834 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms