RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 CCL14Q16627 93 aa9.62□□□□□ -0.87
USP54-213ENST00000481991 C9orf50Q5SZB4 431 aa9.62□□□□□ -0.87
USP54-213ENST00000481991 LHX8Q68G74 356 aa9.62□□□□□ -0.87
USP54-213ENST00000481991 TRMT44Q8IYL2 757 aaKnown RBP9.62□□□□□ -0.87
USP54-213ENST00000481991 ZNF280CQ8ND82 737 aa9.62□□□□□ -0.87
USP54-213ENST00000481991 IL27Q8NEV9 243 aa9.62□□□□□ -0.87
USP54-213ENST00000481991 BADQ92934 168 aa9.62□□□□□ -0.87
USP54-213ENST00000481991 P2RX7Q99572 595 aaKnown RBP9.62□□□□□ -0.87
USP54-213ENST00000481991 PAGR1Q9BTK6 254 aa9.62□□□□□ -0.87
USP54-213ENST00000481991 BICC1Q9H694 974 aaKnown RBP9.62□□□□□ -0.87
USP54-213ENST00000481991 ABCF2Q9UG63 623 aa9.62□□□□□ -0.87
USP54-213ENST00000481991 ENTPD3O75355 529 aa9.61□□□□□ -0.87
USP54-213ENST00000481991 VAMP4O75379 141 aa9.61□□□□□ -0.87
USP54-213ENST00000481991 COL6A1P12109 1028 aa9.61□□□□□ -0.87
USP54-213ENST00000481991 RGS2P41220 211 aa9.61□□□□□ -0.87
USP54-213ENST00000481991 RTP1P59025 263 aa9.61□□□□□ -0.87
USP54-213ENST00000481991 ATP2B2Q01814 1243 aa9.61□□□□□ -0.87
USP54-213ENST00000481991 GJC2Q5T442 439 aaPredicted RBP9.61□□□□□ -0.87
USP54-213ENST00000481991 MFSD14CQ5VZR4 134 aa9.61□□□□□ -0.87
USP54-213ENST00000481991 SH3BP5LQ7L8J4 393 aa9.61□□□□□ -0.87
USP54-213ENST00000481991 DZIP1Q86YF9 867 aaKnown RBP9.61□□□□□ -0.87
USP54-213ENST00000481991 PROCA1Q8NCQ7 364 aaPredicted RBP9.61□□□□□ -0.87
USP54-213ENST00000481991 TTYH1Q9H313 450 aaPredicted RBP9.61□□□□□ -0.87
USP54-213ENST00000481991 DDX60LQ5H9U9 1706 aaKnown RBP9.6□□□□□ -0.87
USP54-213ENST00000481991 USP17L5A8MUK1 530 aa9.6□□□□□ -0.87
USP54-213ENST00000481991 ALDH1L1O75891 902 aa9.6□□□□□ -0.87
USP54-213ENST00000481991 NBPF7P0C2Y1 421 aaPredicted RBP9.6□□□□□ -0.87
USP54-213ENST00000481991 XRCC5P13010 732 aaKnown RBP9.6□□□□□ -0.87
USP54-213ENST00000481991 MAPK4P31152 587 aa9.6□□□□□ -0.87
USP54-213ENST00000481991 HOXD11P31277 338 aaPredicted RBP9.6□□□□□ -0.87
USP54-213ENST00000481991 PLA2G5P39877 138 aa9.6□□□□□ -0.87
USP54-213ENST00000481991 EXOSC9Q06265 439 aaKnown RBP9.6□□□□□ -0.87
USP54-213ENST00000481991 MAP3K12Q12852 859 aa9.6□□□□□ -0.87
USP54-213ENST00000481991 CCDC85BQ15834 202 aaPredicted RBP9.6□□□□□ -0.87
USP54-213ENST00000481991 Q3C1V9 767 aa9.6□□□□□ -0.87
USP54-213ENST00000481991 SLF2Q8IX21 1173 aa9.6□□□□□ -0.87
USP54-213ENST00000481991 SOCS4Q8WXH5 440 aa9.6□□□□□ -0.87
USP54-213ENST00000481991 LPIN2Q92539 896 aa9.6□□□□□ -0.87
USP54-213ENST00000481991 EDC3Q96F86 508 aaKnown RBP9.6□□□□□ -0.87
USP54-213ENST00000481991 AS3MTQ9HBK9 375 aa9.6□□□□□ -0.87
USP54-213ENST00000481991 BTDP43251 543 aa9.59□□□□□ -0.87
USP54-213ENST00000481991 SMAD3P84022 425 aaKnown RBP9.59□□□□□ -0.87
USP54-213ENST00000481991 MAP3K21Q5TCX8 1036 aa9.59□□□□□ -0.87
USP54-213ENST00000481991 ANO1Q5XXA6 986 aa9.59□□□□□ -0.87
USP54-213ENST00000481991 PLEKHH3Q7Z736 793 aa9.59□□□□□ -0.87
USP54-213ENST00000481991 WWC1Q8IX03 1113 aa9.59□□□□□ -0.87
USP54-213ENST00000481991 RNPC3Q96LT9 517 aaKnown RBP9.59□□□□□ -0.87
USP54-213ENST00000481991 IDI2Q9BXS1 227 aa9.59□□□□□ -0.87
USP54-213ENST00000481991 DDX4Q9NQI0 724 aaKnown RBP9.59□□□□□ -0.87
USP54-213ENST00000481991 KBTBD13C9JR72 458 aa9.58□□□□□ -0.88
USP54-213ENST00000481991 GLRX3O76003 335 aaKnown RBP9.58□□□□□ -0.88
USP54-213ENST00000481991 MTMR2Q13614 643 aa9.58□□□□□ -0.88
USP54-213ENST00000481991 GRIN2CQ14957 1233 aa9.58□□□□□ -0.88
USP54-213ENST00000481991 SLC39A5Q6ZMH5 540 aa9.58□□□□□ -0.88
USP54-213ENST00000481991 GPR142Q7Z601 462 aa9.58□□□□□ -0.88
USP54-213ENST00000481991 VGLL2Q8N8G2 317 aa9.58□□□□□ -0.88
USP54-213ENST00000481991 USP38Q8NB14 1042 aa9.58□□□□□ -0.88
USP54-213ENST00000481991 ARRDC4Q8NCT1 418 aa9.58□□□□□ -0.88
USP54-213ENST00000481991 FERMT2Q96AC1 680 aa9.58□□□□□ -0.88
USP54-213ENST00000481991 KAZALD1Q96I82 304 aa9.58□□□□□ -0.88
USP54-213ENST00000481991 TRIM34Q9BYJ4 488 aa9.58□□□□□ -0.88
USP54-213ENST00000481991 OSBPL5Q9H0X9 879 aaPredicted RBP9.58□□□□□ -0.88
USP54-213ENST00000481991 SIL1Q9H173 461 aa9.58□□□□□ -0.88
USP54-213ENST00000481991 TXNRD2Q9NNW7 524 aa9.58□□□□□ -0.88
USP54-213ENST00000481991 CEP126Q9P2H0 1117 aa9.58□□□□□ -0.88
USP54-213ENST00000481991 MORF4L1Q9UBU8 362 aa9.58□□□□□ -0.88
USP54-213ENST00000481991 DDX20Q9UHI6 824 aaKnown RBP9.58□□□□□ -0.88
USP54-213ENST00000481991 DENND2AQ9ULE3 1009 aa9.58□□□□□ -0.88
USP54-213ENST00000481991 FGFR2P21802 821 aa9.57□□□□□ -0.88
USP54-213ENST00000481991 IGFBP4P22692 258 aa9.57□□□□□ -0.88
USP54-213ENST00000481991 CAP2P40123 477 aa9.57□□□□□ -0.88
USP54-213ENST00000481991 HERVK_113P62684 666 aa9.57□□□□□ -0.88
USP54-213ENST00000481991 MAP3K10Q02779 954 aa9.57□□□□□ -0.88
USP54-213ENST00000481991 MAP2K5Q13163 448 aa9.57□□□□□ -0.88
USP54-213ENST00000481991 ATP2B3Q16720 1220 aa9.57□□□□□ -0.88
USP54-213ENST00000481991 TRIM60Q495X7 471 aa9.57□□□□□ -0.88
USP54-213ENST00000481991 SPTY2D1Q68D10 685 aaPredicted RBP9.57□□□□□ -0.88
USP54-213ENST00000481991 CCDC129Q6ZRS4 1044 aa9.57□□□□□ -0.88
USP54-213ENST00000481991 ZGPATQ8N5A5 531 aaKnown RBP9.57□□□□□ -0.88
USP54-213ENST00000481991 LPAR1Q92633 364 aa9.57□□□□□ -0.88
USP54-213ENST00000481991 GAS2L1Q99501 681 aaPredicted RBP9.57□□□□□ -0.88
USP54-213ENST00000481991 PORCNQ9H237 461 aa9.57□□□□□ -0.88
USP54-213ENST00000481991 RBPJLQ9UBG7 517 aa9.57□□□□□ -0.88
USP54-213ENST00000481991 EYA2O00167 538 aa9.56□□□□□ -0.88
USP54-213ENST00000481991 DNM1LO00429 736 aa9.56□□□□□ -0.88
USP54-213ENST00000481991 TBC1D12O60347 775 aa9.56□□□□□ -0.88
USP54-213ENST00000481991 CYP2C19P33261 490 aa9.56□□□□□ -0.88
USP54-213ENST00000481991 ADCYAP1R1P41586 468 aa9.56□□□□□ -0.88
USP54-213ENST00000481991 ERVK-9P63128 1117 aa9.56□□□□□ -0.88
USP54-213ENST00000481991 ERVK-24P63145 666 aa9.56□□□□□ -0.88
USP54-213ENST00000481991 MRPS5P82675 430 aaKnown RBP9.56□□□□□ -0.88
USP54-213ENST00000481991 ZYXQ15942 572 aaKnown RBP9.56□□□□□ -0.88
USP54-213ENST00000481991 SH3RF1Q7Z6J0 888 aa9.56□□□□□ -0.88
USP54-213ENST00000481991 ADAMTS19Q8TE59 1207 aa9.56□□□□□ -0.88
USP54-213ENST00000481991 ASB2Q96Q27 587 aa9.56□□□□□ -0.88
USP54-213ENST00000481991 UHRF1Q96T88 793 aaPredicted RBP9.56□□□□□ -0.88
USP54-213ENST00000481991 APBA2Q99767 749 aa9.56□□□□□ -0.88
USP54-213ENST00000481991 TBC1D2Q9BYX2 928 aa9.56□□□□□ -0.88
USP54-213ENST00000481991 FLRT1Q9NZU1 646 aa9.56□□□□□ -0.88
USP54-213ENST00000481991 IVNS1ABPQ9Y6Y0 642 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms