RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 RRP12Q5JTH9 1297 aaKnown RBP20.78■□□□□ 0.92
UPF3A-206ENST00000480362 CHST3Q7LGC8 479 aa20.78■□□□□ 0.92
UPF3A-206ENST00000480362 NKX2-3Q8TAU0 364 aa20.78■□□□□ 0.92
UPF3A-206ENST00000480362 ALDH8A1Q9H2A2 487 aaPredicted RBP20.78■□□□□ 0.92
UPF3A-206ENST00000480362 VEZTQ9HBM0 779 aa20.78■□□□□ 0.92
UPF3A-206ENST00000480362 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.78■□□□□ 0.92
UPF3A-206ENST00000480362 ZC3H4Q9UPT8 1303 aaKnown RBP20.78■□□□□ 0.92
UPF3A-206ENST00000480362 GOLGB1Q14789 3259 aaKnown RBP20.77■□□□□ 0.92
UPF3A-206ENST00000480362 ROBO3Q96MS0 1386 aa20.77■□□□□ 0.92
UPF3A-206ENST00000480362 KDM4AO75164 1064 aa20.77■□□□□ 0.92
UPF3A-206ENST00000480362 LMOD1P29536 600 aaPredicted RBP20.77■□□□□ 0.92
UPF3A-206ENST00000480362 FKBP1CQ5VVH2 108 aa20.77■□□□□ 0.92
UPF3A-206ENST00000480362 DHX36Q9H2U1 1008 aaKnown RBP20.77■□□□□ 0.92
UPF3A-206ENST00000480362 DDTLA6NHG4 134 aaPredicted RBP20.76■□□□□ 0.91
UPF3A-206ENST00000480362 PRC1O43663 620 aa20.76■□□□□ 0.91
UPF3A-206ENST00000480362 ORC4O43929 436 aa20.76■□□□□ 0.91
UPF3A-206ENST00000480362 PRDM1O75626 825 aa20.76■□□□□ 0.91
UPF3A-206ENST00000480362 HLA-DOAP06340 250 aa20.76■□□□□ 0.91
UPF3A-206ENST00000480362 MCM2P49736 904 aa20.76■□□□□ 0.91
UPF3A-206ENST00000480362 ANTXR2P58335 489 aa20.76■□□□□ 0.91
UPF3A-206ENST00000480362 Q6ZUG5 572 aa20.76■□□□□ 0.91
UPF3A-206ENST00000480362 NOL8Q76FK4 1167 aaKnown RBP20.76■□□□□ 0.91
UPF3A-206ENST00000480362 CYB5R4Q7L1T6 521 aa20.76■□□□□ 0.91
UPF3A-206ENST00000480362 SH3BP5LQ7L8J4 393 aa20.76■□□□□ 0.91
UPF3A-206ENST00000480362 ZSCAN29Q8IWY8 852 aaPredicted RBP20.76■□□□□ 0.91
UPF3A-206ENST00000480362 LRRC2Q9BYS8 371 aa20.76■□□□□ 0.91
UPF3A-206ENST00000480362 ZSWIM5Q9P217 1185 aa20.76■□□□□ 0.91
UPF3A-206ENST00000480362 K7ELQ4 463 aaPredicted RBP20.75■□□□□ 0.91
UPF3A-206ENST00000480362 SLC4A3P48751 1232 aa20.75■□□□□ 0.91
UPF3A-206ENST00000480362 C16orf86Q6ZW13 317 aa20.75■□□□□ 0.91
UPF3A-206ENST00000480362 TRPM4Q8TD43 1214 aa20.75■□□□□ 0.91
UPF3A-206ENST00000480362 FAM151AQ8WW52 585 aa20.75■□□□□ 0.91
UPF3A-206ENST00000480362 ESR2Q92731 530 aa20.75■□□□□ 0.91
UPF3A-206ENST00000480362 LARP6Q9BRS8 491 aaKnown RBP20.75■□□□□ 0.91
UPF3A-206ENST00000480362 MKNK2Q9HBH9 465 aa20.75■□□□□ 0.91
UPF3A-206ENST00000480362 WDR19Q8NEZ3 1342 aa20.75■□□□□ 0.91
UPF3A-206ENST00000480362 CNTNAP1P78357 1384 aa20.74■□□□□ 0.91
UPF3A-206ENST00000480362 DCAF8L1A6NGE4 600 aa20.74■□□□□ 0.91
UPF3A-206ENST00000480362 GLTPD2A6NH11 291 aa20.74■□□□□ 0.91
UPF3A-206ENST00000480362 CDK8P49336 464 aa20.74■□□□□ 0.91
UPF3A-206ENST00000480362 FGD1P98174 961 aa20.74■□□□□ 0.91
UPF3A-206ENST00000480362 TOB2Q14106 344 aaPredicted RBP20.74■□□□□ 0.91
UPF3A-206ENST00000480362 ANKRD1Q15327 319 aa20.74■□□□□ 0.91
UPF3A-206ENST00000480362 FAM83AQ86UY5 434 aa20.74■□□□□ 0.91
UPF3A-206ENST00000480362 SLC44A5Q8NCS7 719 aa20.74■□□□□ 0.91
UPF3A-206ENST00000480362 ZNF287Q9HBT7 754 aa20.74■□□□□ 0.91
UPF3A-206ENST00000480362 DAXXQ9UER7 740 aaPredicted RBP20.74■□□□□ 0.91
UPF3A-206ENST00000480362 ASTN2O75129 1339 aaPredicted RBP20.74■□□□□ 0.91
UPF3A-206ENST00000480362 RANBP6O60518 1105 aaKnown RBP20.73■□□□□ 0.91
UPF3A-206ENST00000480362 HIRAP54198 1017 aaPredicted RBP20.73■□□□□ 0.91
UPF3A-206ENST00000480362 GABPAQ06546 454 aa20.73■□□□□ 0.91
UPF3A-206ENST00000480362 L3MBTL3Q96JM7 780 aaPredicted RBP20.73■□□□□ 0.91
UPF3A-206ENST00000480362 EHD4Q9H223 541 aa20.73■□□□□ 0.91
UPF3A-206ENST00000480362 ADARB2Q9NS39 739 aaKnown RBP20.73■□□□□ 0.91
UPF3A-206ENST00000480362 PI4KBQ9UBF8 816 aa20.73■□□□□ 0.91
UPF3A-206ENST00000480362 SERPINB13Q9UIV8 391 aa20.73■□□□□ 0.91
UPF3A-206ENST00000480362 HACL1Q9UJ83 578 aa20.73■□□□□ 0.91
UPF3A-206ENST00000480362 LIMCH1Q9UPQ0 1083 aa20.73■□□□□ 0.91
UPF3A-206ENST00000480362 ATRNL1Q5VV63 1379 aa20.72■□□□□ 0.91
UPF3A-206ENST00000480362 TNNI2P48788 182 aa20.72■□□□□ 0.91
UPF3A-206ENST00000480362 FOXP4Q8IVH2 680 aaPredicted RBP20.72■□□□□ 0.91
UPF3A-206ENST00000480362 ZNF444Q8N0Y2 327 aaPredicted RBP20.72■□□□□ 0.91
UPF3A-206ENST00000480362 BRF1Q92994 677 aa20.72■□□□□ 0.91
UPF3A-206ENST00000480362 SWAP70Q9UH65 585 aa20.72■□□□□ 0.91
UPF3A-206ENST00000480362 COL2A1P02458 1487 aaPredicted RBP20.72■□□□□ 0.91
UPF3A-206ENST00000480362 RASA1P20936 1047 aa20.71■□□□□ 0.91
UPF3A-206ENST00000480362 FAM47AQ5JRC9 791 aa20.71■□□□□ 0.91
UPF3A-206ENST00000480362 FBXL16Q8N461 479 aa20.71■□□□□ 0.91
UPF3A-206ENST00000480362 TMEM87BQ96K49 555 aa20.71■□□□□ 0.91
UPF3A-206ENST00000480362 ZKSCAN3Q9BRR0 538 aa20.71■□□□□ 0.91
UPF3A-206ENST00000480362 AGXT2Q9BYV1 514 aa20.71■□□□□ 0.91
UPF3A-206ENST00000480362 TMEM39BQ9GZU3 492 aa20.71■□□□□ 0.91
UPF3A-206ENST00000480362 GPHNQ9NQX3 736 aaPredicted RBP20.71■□□□□ 0.91
UPF3A-206ENST00000480362 SCAF8Q9UPN6 1271 aaKnown RBP20.71■□□□□ 0.91
UPF3A-206ENST00000480362 IFIT3O14879 490 aaKnown RBP20.7■□□□□ 0.9
UPF3A-206ENST00000480362 NT5C2P49902 561 aa20.7■□□□□ 0.9
UPF3A-206ENST00000480362 TFAP4Q01664 338 aa20.7■□□□□ 0.9
UPF3A-206ENST00000480362 TNFAIP1Q13829 316 aa20.7■□□□□ 0.9
UPF3A-206ENST00000480362 RASA3Q14644 834 aa20.7■□□□□ 0.9
UPF3A-206ENST00000480362 ANGEL2Q5VTE6 544 aaKnown RBP20.7■□□□□ 0.9
UPF3A-206ENST00000480362 CRACR2BQ8N4Y2 399 aaPredicted RBP20.7■□□□□ 0.9
UPF3A-206ENST00000480362 IGDCC4Q8TDY8 1250 aa20.7■□□□□ 0.9
UPF3A-206ENST00000480362 TMX3Q96JJ7 454 aa20.7■□□□□ 0.9
UPF3A-206ENST00000480362 TSPY2A6NKD2 308 aa20.69■□□□□ 0.9
UPF3A-206ENST00000480362 SH2B2O14492 632 aaPredicted RBP20.69■□□□□ 0.9
UPF3A-206ENST00000480362 SLURP2P0DP57 97 aa20.69■□□□□ 0.9
UPF3A-206ENST00000480362 TMEM67Q5HYA8 995 aa20.69■□□□□ 0.9
UPF3A-206ENST00000480362 ZSCAN31Q96LW9 406 aaPredicted RBP20.69■□□□□ 0.9
UPF3A-206ENST00000480362 CSRNP1Q96S65 589 aa20.69■□□□□ 0.9
UPF3A-206ENST00000480362 MTA3Q9BTC8 594 aa20.69■□□□□ 0.9
UPF3A-206ENST00000480362 TRIM34Q9BYJ4 488 aa20.69■□□□□ 0.9
UPF3A-206ENST00000480362 PGAP2Q9UHJ9 254 aa20.69■□□□□ 0.9
UPF3A-206ENST00000480362 TAOK2Q9UL54 1235 aa20.69■□□□□ 0.9
UPF3A-206ENST00000480362 TPCN1Q9ULQ1 816 aa20.69■□□□□ 0.9
UPF3A-206ENST00000480362 APOBRQ0VD83 1088 aa20.68■□□□□ 0.9
UPF3A-206ENST00000480362 SART3Q15020 963 aaKnown RBP20.68■□□□□ 0.9
UPF3A-206ENST00000480362 METTL16Q86W50 562 aaKnown RBP20.68■□□□□ 0.9
UPF3A-206ENST00000480362 IQCA1Q86XH1 822 aa20.68■□□□□ 0.9
UPF3A-206ENST00000480362 APOBEC3FQ8IUX4 373 aaKnown RBP20.68■□□□□ 0.9
UPF3A-206ENST00000480362 ZSCAN10Q96SZ4 725 aaPredicted RBP20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms