RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 BCL2L13Q9BXK5 485 aa7.79□□□□□ -1.16
SF3B1-209ENST00000479532 PHAXQ9H814 394 aaKnown RBP7.79□□□□□ -1.16
SF3B1-209ENST00000479532 SPON1Q9HCB6 807 aa7.79□□□□□ -1.16
SF3B1-209ENST00000479532 SRP68Q9UHB9 627 aaKnown RBP7.79□□□□□ -1.16
SF3B1-209ENST00000479532 PARP3Q9Y6F1 533 aa7.79□□□□□ -1.16
SF3B1-209ENST00000479532 AFDNP55196 1824 aaKnown RBP7.78□□□□□ -1.16
SF3B1-209ENST00000479532 SHISA8B8ZZ34 492 aa7.78□□□□□ -1.16
SF3B1-209ENST00000479532 ZBTB7AO95365 584 aa7.78□□□□□ -1.16
SF3B1-209ENST00000479532 ADH1AP07327 375 aa7.78□□□□□ -1.16
SF3B1-209ENST00000479532 PARP10Q53GL7 1025 aa7.78□□□□□ -1.16
SF3B1-209ENST00000479532 INTS6LQ5JSJ4 861 aaKnown RBP7.78□□□□□ -1.16
SF3B1-209ENST00000479532 MSL1Q68DK7 614 aa7.78□□□□□ -1.16
SF3B1-209ENST00000479532 KSR2Q6VAB6 950 aa7.78□□□□□ -1.16
SF3B1-209ENST00000479532 PPP1R42Q7Z4L9 355 aa7.78□□□□□ -1.16
SF3B1-209ENST00000479532 API5Q9BZZ5 524 aaKnown RBP7.78□□□□□ -1.16
SF3B1-209ENST00000479532 NYXQ9GZU5 481 aa7.78□□□□□ -1.16
SF3B1-209ENST00000479532 RCAN3Q9UKA8 241 aa7.78□□□□□ -1.16
SF3B1-209ENST00000479532 IVNS1ABPQ9Y6Y0 642 aa7.78□□□□□ -1.16
SF3B1-209ENST00000479532 CARMIL3Q8ND23 1372 aa7.78□□□□□ -1.16
SF3B1-209ENST00000479532 ATP10DQ9P241 1426 aa7.78□□□□□ -1.16
SF3B1-209ENST00000479532 PI4KAP2A4QPH2 592 aa7.77□□□□□ -1.17
SF3B1-209ENST00000479532 ZBTB7BO15156 539 aaPredicted RBP7.77□□□□□ -1.17
SF3B1-209ENST00000479532 GTF2E1P29083 439 aaPredicted RBP7.77□□□□□ -1.17
SF3B1-209ENST00000479532 USP4Q13107 963 aa7.77□□□□□ -1.17
SF3B1-209ENST00000479532 TMCO4Q5TGY1 634 aa7.77□□□□□ -1.17
SF3B1-209ENST00000479532 BICDL1Q6ZP65 573 aa7.77□□□□□ -1.17
SF3B1-209ENST00000479532 LRP10Q7Z4F1 713 aa7.77□□□□□ -1.17
SF3B1-209ENST00000479532 SIX5Q8N196 739 aa7.77□□□□□ -1.17
SF3B1-209ENST00000479532 PI4KAP1Q8N8J0 262 aa7.77□□□□□ -1.17
SF3B1-209ENST00000479532 TPCN2Q8NHX9 752 aa7.77□□□□□ -1.17
SF3B1-209ENST00000479532 EDARADDQ8WWZ3 215 aa7.77□□□□□ -1.17
SF3B1-209ENST00000479532 DNAAF4Q8WXU2 420 aa7.77□□□□□ -1.17
SF3B1-209ENST00000479532 ARHGAP45Q92619 1136 aa7.77□□□□□ -1.17
SF3B1-209ENST00000479532 FRAT1Q92837 279 aaPredicted RBP7.77□□□□□ -1.17
SF3B1-209ENST00000479532 SUV39H2Q9H5I1 410 aa7.77□□□□□ -1.17
SF3B1-209ENST00000479532 ZFP64Q9NPA5 681 aa7.77□□□□□ -1.17
SF3B1-209ENST00000479532 PPP1R1BQ9UD71 204 aaPredicted RBP7.77□□□□□ -1.17
SF3B1-209ENST00000479532 NIP7Q9Y221 180 aaKnown RBP eCLIP7.77□□□□□ -1.17
SF3B1-209ENST00000479532 MAP3K2Q9Y2U5 619 aa7.77□□□□□ -1.17
SF3B1-209ENST00000479532 RBM19Q9Y4C8 960 aaKnown RBP7.77□□□□□ -1.17
SF3B1-209ENST00000479532 COL24A1Q17RW2 1714 aa7.77□□□□□ -1.17
SF3B1-209ENST00000479532 PXDNLA1KZ92 1463 aa7.76□□□□□ -1.17
SF3B1-209ENST00000479532 DKK1O94907 266 aa7.76□□□□□ -1.17
SF3B1-209ENST00000479532 MMP10P09238 476 aa7.76□□□□□ -1.17
SF3B1-209ENST00000479532 HSP90B1P14625 803 aaKnown RBP7.76□□□□□ -1.17
SF3B1-209ENST00000479532 ST5P78524 1137 aa7.76□□□□□ -1.17
SF3B1-209ENST00000479532 TCIRG1Q13488 830 aa7.76□□□□□ -1.17
SF3B1-209ENST00000479532 HLFQ16534 295 aa7.76□□□□□ -1.17
SF3B1-209ENST00000479532 ZKSCAN2Q63HK3 967 aa7.76□□□□□ -1.17
SF3B1-209ENST00000479532 TBC1D9BQ66K14 1250 aa7.76□□□□□ -1.17
SF3B1-209ENST00000479532 CCDC102BQ68D86 513 aa7.76□□□□□ -1.17
SF3B1-209ENST00000479532 SLC4A10Q6U841 1118 aa7.76□□□□□ -1.17
SF3B1-209ENST00000479532 TPTE2Q6XPS3 522 aa7.76□□□□□ -1.17
SF3B1-209ENST00000479532 G2E3Q7L622 706 aa7.76□□□□□ -1.17
SF3B1-209ENST00000479532 NBPF5PQ86XG9 351 aaPredicted RBP7.76□□□□□ -1.17
SF3B1-209ENST00000479532 FTSJ3Q8IY81 847 aaKnown RBP7.76□□□□□ -1.17
SF3B1-209ENST00000479532 CLP1Q92989 425 aaKnown RBP7.76□□□□□ -1.17
SF3B1-209ENST00000479532 MYD88Q99836 296 aa7.76□□□□□ -1.17
SF3B1-209ENST00000479532 METTL22Q9BUU2 404 aaPredicted RBP7.76□□□□□ -1.17
SF3B1-209ENST00000479532 PDGFDQ9GZP0 370 aaPredicted RBP7.76□□□□□ -1.17
SF3B1-209ENST00000479532 GOLGA2P5Q9HBQ8 144 aa7.76□□□□□ -1.17
SF3B1-209ENST00000479532 TMPRSS4Q9NRS4 437 aa7.76□□□□□ -1.17
SF3B1-209ENST00000479532 NOB1Q9ULX3 412 aaKnown RBP7.76□□□□□ -1.17
SF3B1-209ENST00000479532 DYRK1BQ9Y463 629 aa7.76□□□□□ -1.17
SF3B1-209ENST00000479532 PCDHGA11Q9Y5H2 935 aa7.76□□□□□ -1.17
SF3B1-209ENST00000479532 RNF123Q5XPI4 1314 aa7.76□□□□□ -1.17
SF3B1-209ENST00000479532 LRP5O75197 1615 aa7.75□□□□□ -1.17
SF3B1-209ENST00000479532 IBTKQ9P2D0 1353 aaPredicted RBP7.75□□□□□ -1.17
SF3B1-209ENST00000479532 ERVH48-1M5A8F1 160 aa7.75□□□□□ -1.17
SF3B1-209ENST00000479532 BCAR3O75815 825 aa7.75□□□□□ -1.17
SF3B1-209ENST00000479532 MYCP01106 439 aaPredicted RBP7.75□□□□□ -1.17
SF3B1-209ENST00000479532 SERPINB2P05120 415 aa7.75□□□□□ -1.17
SF3B1-209ENST00000479532 GPTP24298 496 aa7.75□□□□□ -1.17
SF3B1-209ENST00000479532 TM4SF1P30408 202 aa7.75□□□□□ -1.17
SF3B1-209ENST00000479532 RNF144AP50876 292 aaPredicted RBP7.75□□□□□ -1.17
SF3B1-209ENST00000479532 NFIXQ14938 502 aa7.75□□□□□ -1.17
SF3B1-209ENST00000479532 SWI5Q1ZZU3 235 aa7.75□□□□□ -1.17
SF3B1-209ENST00000479532 PHLDB3Q6NSJ2 640 aa7.75□□□□□ -1.17
SF3B1-209ENST00000479532 ATF7IPQ6VMQ6 1270 aa7.75□□□□□ -1.17
SF3B1-209ENST00000479532 CNBD1Q8NA66 436 aa7.75□□□□□ -1.17
SF3B1-209ENST00000479532 CCDC191Q8NCU4 936 aa7.75□□□□□ -1.17
SF3B1-209ENST00000479532 UTP14AQ9BVJ6 771 aaKnown RBP7.75□□□□□ -1.17
SF3B1-209ENST00000479532 CWC25Q9NXE8 425 aaPredicted RBP7.75□□□□□ -1.17
SF3B1-209ENST00000479532 N4BP2Q86UW6 1770 aaPredicted RBP7.74□□□□□ -1.17
SF3B1-209ENST00000479532 ADCY9O60503 1353 aa7.74□□□□□ -1.17
SF3B1-209ENST00000479532 FAM177BA6PVY3 158 aa7.74□□□□□ -1.17
SF3B1-209ENST00000479532 POLRMTO00411 1230 aaKnown RBP7.74□□□□□ -1.17
SF3B1-209ENST00000479532 GNB5O14775 395 aa7.74□□□□□ -1.17
SF3B1-209ENST00000479532 CHRNA4P43681 627 aa7.74□□□□□ -1.17
SF3B1-209ENST00000479532 SCTRP47872 440 aa7.74□□□□□ -1.17
SF3B1-209ENST00000479532 CCT4P50991 539 aaKnown RBP7.74□□□□□ -1.17
SF3B1-209ENST00000479532 SEC13P55735 322 aa7.74□□□□□ -1.17
SF3B1-209ENST00000479532 TRIM28Q13263 835 aaKnown RBP7.74□□□□□ -1.17
SF3B1-209ENST00000479532 ZNF34Q8IZ26 560 aa7.74□□□□□ -1.17
SF3B1-209ENST00000479532 ZNF784Q8NCA9 323 aaPredicted RBP7.74□□□□□ -1.17
SF3B1-209ENST00000479532 LINS1Q8NG48 757 aa7.74□□□□□ -1.17
SF3B1-209ENST00000479532 ISCA1Q9BUE6 129 aa7.74□□□□□ -1.17
SF3B1-209ENST00000479532 SRCIN1Q9C0H9 1055 aa7.74□□□□□ -1.17
SF3B1-209ENST00000479532 TRMT112Q9UI30 125 aaKnown RBP7.74□□□□□ -1.17
SF3B1-209ENST00000479532 GDF2Q9UK05 429 aaPredicted RBP7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 227.1 ms