RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 NDUFA8P51970 172 aa16.59■□□□□ 0.25
HDAC6-220ENST00000477528 TDRD12Q587J7 1177 aaKnown RBP16.59■□□□□ 0.25
HDAC6-220ENST00000477528 WWC2Q6AWC2 1192 aa16.59■□□□□ 0.25
HDAC6-220ENST00000477528 RBM6P78332 1123 aaKnown RBP16.58■□□□□ 0.25
HDAC6-220ENST00000477528 UBE4AQ14139 1066 aa16.58■□□□□ 0.25
HDAC6-220ENST00000477528 ZSCAN10Q96SZ4 725 aaPredicted RBP16.58■□□□□ 0.25
HDAC6-220ENST00000477528 ARPP21Q9UBL0 812 aaPredicted RBP16.58■□□□□ 0.25
HDAC6-220ENST00000477528 WWC3Q9ULE0 1092 aa16.58■□□□□ 0.25
HDAC6-220ENST00000477528 SPDYE4A6NLX3 237 aa16.58■□□□□ 0.24
HDAC6-220ENST00000477528 NBPF26B4DH59 902 aa16.58■□□□□ 0.24
HDAC6-220ENST00000477528 RIOK3O14730 519 aaKnown RBP16.58■□□□□ 0.24
HDAC6-220ENST00000477528 NBPF14Q5TI25 921 aa16.58■□□□□ 0.24
HDAC6-220ENST00000477528 NBPF10Q6P3W6 841 aaKnown RBP16.58■□□□□ 0.24
HDAC6-220ENST00000477528 NBPF15Q8N660 670 aa16.58■□□□□ 0.24
HDAC6-220ENST00000477528 VPS54Q9P1Q0 977 aa16.58■□□□□ 0.24
HDAC6-220ENST00000477528 UFL1O94874 794 aa16.58■□□□□ 0.24
HDAC6-220ENST00000477528 FOXO4P98177 505 aa16.58■□□□□ 0.24
HDAC6-220ENST00000477528 SF3B2Q13435 895 aaKnown RBP16.58■□□□□ 0.24
HDAC6-220ENST00000477528 TNIP1Q15025 636 aa16.58■□□□□ 0.24
HDAC6-220ENST00000477528 TNKSO95271 1327 aa16.58■□□□□ 0.24
HDAC6-220ENST00000477528 USP17L12C9JPN9 530 aa16.58■□□□□ 0.24
HDAC6-220ENST00000477528 USP17L21D6R901 530 aa16.58■□□□□ 0.24
HDAC6-220ENST00000477528 UTYO14607 1347 aa16.58■□□□□ 0.24
HDAC6-220ENST00000477528 CYLC1P35663 651 aaPredicted RBP16.58■□□□□ 0.24
HDAC6-220ENST00000477528 SDR42E1Q8WUS8 393 aa16.58■□□□□ 0.24
HDAC6-220ENST00000477528 ISCA1Q9BUE6 129 aa16.58■□□□□ 0.24
HDAC6-220ENST00000477528 UBA5Q9GZZ9 404 aa16.58■□□□□ 0.24
HDAC6-220ENST00000477528 SIGLEC1Q9BZZ2 1709 aa16.57■□□□□ 0.24
HDAC6-220ENST00000477528 BICDL2A1A5D9 508 aa16.57■□□□□ 0.24
HDAC6-220ENST00000477528 SLC39A14Q15043 492 aa16.57■□□□□ 0.24
HDAC6-220ENST00000477528 CNGA4Q8IV77 575 aa16.57■□□□□ 0.24
HDAC6-220ENST00000477528 EHMT1Q9H9B1 1298 aa16.57■□□□□ 0.24
HDAC6-220ENST00000477528 PRDM10Q9NQV6 1147 aa16.57■□□□□ 0.24
HDAC6-220ENST00000477528 ZNF219Q9P2Y4 722 aaPredicted RBP16.57■□□□□ 0.24
HDAC6-220ENST00000477528 XPO4Q9C0E2 1151 aaKnown RBP16.57■□□□□ 0.24
HDAC6-220ENST00000477528 NFE2L3Q9Y4A8 694 aa16.57■□□□□ 0.24
HDAC6-220ENST00000477528 AKR1B15C9JRZ8 316 aaPredicted RBP16.57■□□□□ 0.24
HDAC6-220ENST00000477528 PLCD1P51178 756 aa16.57■□□□□ 0.24
HDAC6-220ENST00000477528 PNOCQ13519 176 aa16.57■□□□□ 0.24
HDAC6-220ENST00000477528 VPS36Q86VN1 386 aa16.57■□□□□ 0.24
HDAC6-220ENST00000477528 SAP30BPQ9UHR5 308 aaKnown RBP16.57■□□□□ 0.24
HDAC6-220ENST00000477528 KRT79Q5XKE5 535 aa16.56■□□□□ 0.24
HDAC6-220ENST00000477528 ALS2CR12Q96Q35 445 aa16.56■□□□□ 0.24
HDAC6-220ENST00000477528 CRACR2AQ9BSW2 395 aa16.56■□□□□ 0.24
HDAC6-220ENST00000477528 PCP11498 1178 aaKnown RBP16.56■□□□□ 0.24
HDAC6-220ENST00000477528 ODF2Q5BJF6 829 aa16.56■□□□□ 0.24
HDAC6-220ENST00000477528 ERMNQ8TAM6 284 aa16.56■□□□□ 0.24
HDAC6-220ENST00000477528 SEC31BQ9NQW1 1179 aa16.56■□□□□ 0.24
HDAC6-220ENST00000477528 GGA1Q9UJY5 639 aa16.56■□□□□ 0.24
HDAC6-220ENST00000477528 CDHR2Q9BYE9 1310 aa16.56■□□□□ 0.24
HDAC6-220ENST00000477528 ZNF335Q9H4Z2 1342 aaPredicted RBP16.56■□□□□ 0.24
HDAC6-220ENST00000477528 BTBD18B2RXH4 712 aa16.56■□□□□ 0.24
HDAC6-220ENST00000477528 PAFAH1B1P43034 410 aa16.56■□□□□ 0.24
HDAC6-220ENST00000477528 LINC00301Q8NCQ3 95 aa16.56■□□□□ 0.24
HDAC6-220ENST00000477528 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.56■□□□□ 0.24
HDAC6-220ENST00000477528 V9GYY5 206 aaPredicted RBP16.56■□□□□ 0.24
HDAC6-220ENST00000477528 SH2B2O14492 632 aaPredicted RBP16.56■□□□□ 0.24
HDAC6-220ENST00000477528 KIF23Q02241 960 aaPredicted RBP16.56■□□□□ 0.24
HDAC6-220ENST00000477528 UBXN1Q04323 297 aa16.56■□□□□ 0.24
HDAC6-220ENST00000477528 HLFQ16534 295 aa16.56■□□□□ 0.24
HDAC6-220ENST00000477528 CCDC94Q9BW85 323 aaPredicted RBP16.56■□□□□ 0.24
HDAC6-220ENST00000477528 ERLIN2O94905 339 aa16.55■□□□□ 0.24
HDAC6-220ENST00000477528 ZSWIM4Q9H7M6 989 aa16.55■□□□□ 0.24
HDAC6-220ENST00000477528 PIH1D3Q9NQM4 214 aaKnown RBP16.55■□□□□ 0.24
HDAC6-220ENST00000477528 MYO5BQ9ULV0 1848 aa16.55■□□□□ 0.24
HDAC6-220ENST00000477528 SYNRGQ9UMZ2 1314 aa16.55■□□□□ 0.24
HDAC6-220ENST00000477528 PPP6R2O75170 966 aa16.55■□□□□ 0.24
HDAC6-220ENST00000477528 MCAMP43121 646 aa16.55■□□□□ 0.24
HDAC6-220ENST00000477528 SETQ01105 290 aaPredicted RBP16.55■□□□□ 0.24
HDAC6-220ENST00000477528 TRIM28Q13263 835 aaKnown RBP16.55■□□□□ 0.24
HDAC6-220ENST00000477528 PDIA6Q15084 440 aa16.55■□□□□ 0.24
HDAC6-220ENST00000477528 KRT222Q8N1A0 295 aa16.55■□□□□ 0.24
HDAC6-220ENST00000477528 FTOQ9C0B1 505 aaKnown RBP eCLIP16.55■□□□□ 0.24
HDAC6-220ENST00000477528 SEPT11Q9NVA2 429 aaKnown RBP16.55■□□□□ 0.24
HDAC6-220ENST00000477528 SERTAD1Q9UHV2 236 aa16.55■□□□□ 0.24
HDAC6-220ENST00000477528 TFAP4Q01664 338 aa16.55■□□□□ 0.24
HDAC6-220ENST00000477528 CCDC24Q8N4L8 307 aa16.55■□□□□ 0.24
HDAC6-220ENST00000477528 ERO1AQ96HE7 468 aa16.55■□□□□ 0.24
HDAC6-220ENST00000477528 hCG_1642624A0A1W2PR95 340 aa16.54■□□□□ 0.24
HDAC6-220ENST00000477528 GOLGA6L10A6NI86 522 aa16.54■□□□□ 0.24
HDAC6-220ENST00000477528 AKR1B10O60218 316 aa16.54■□□□□ 0.24
HDAC6-220ENST00000477528 TNNI2P48788 182 aa16.54■□□□□ 0.24
HDAC6-220ENST00000477528 TRAF1Q13077 416 aa16.54■□□□□ 0.24
HDAC6-220ENST00000477528 CMTR1Q8N1G2 835 aaKnown RBP16.54■□□□□ 0.24
HDAC6-220ENST00000477528 LZTS2Q9BRK4 669 aa16.54■□□□□ 0.24
HDAC6-220ENST00000477528 SALL3Q9BXA9 1300 aa16.54■□□□□ 0.24
HDAC6-220ENST00000477528 LETM2Q2VYF4 491 aa16.54■□□□□ 0.24
HDAC6-220ENST00000477528 KRBA2Q6ZNG9 492 aa16.54■□□□□ 0.24
HDAC6-220ENST00000477528 IGSF22Q8N9C0 903 aa16.54■□□□□ 0.24
HDAC6-220ENST00000477528 IL25Q9H293 177 aa16.54■□□□□ 0.24
HDAC6-220ENST00000477528 CTNND2Q9UQB3 1225 aa16.54■□□□□ 0.24
HDAC6-220ENST00000477528 OVOS2A0A0G2JMS6 1433 aa16.54■□□□□ 0.24
HDAC6-220ENST00000477528 SLFNL1Q499Z3 407 aa16.54■□□□□ 0.24
HDAC6-220ENST00000477528 FAM47AQ5JRC9 791 aa16.54■□□□□ 0.24
HDAC6-220ENST00000477528 SEMA3EO15041 775 aa16.54■□□□□ 0.24
HDAC6-220ENST00000477528 FMNL1O95466 1100 aaPredicted RBP16.54■□□□□ 0.24
HDAC6-220ENST00000477528 PPP1R2P41236 205 aa16.54■□□□□ 0.24
HDAC6-220ENST00000477528 ATG9AQ7Z3C6 839 aa16.54■□□□□ 0.24
HDAC6-220ENST00000477528 CDC25BP30305 580 aa16.53■□□□□ 0.24
HDAC6-220ENST00000477528 LRMPQ12912 555 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms