RNA–Protein interactions for RNA: ENST00000477085.1

COL4A6-206, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best)

Gene COL4A6, Length 1,784 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-206ENST00000477085 LAMB1P07942 1786 aa17■□□□□ 0.31
COL4A6-206ENST00000477085 DDX60LQ5H9U9 1706 aaKnown RBP17■□□□□ 0.31
COL4A6-206ENST00000477085 PCP11498 1178 aaKnown RBP17■□□□□ 0.31
COL4A6-206ENST00000477085 SYT1P21579 422 aa17■□□□□ 0.31
COL4A6-206ENST00000477085 LIFRP42702 1097 aa17■□□□□ 0.31
COL4A6-206ENST00000477085 SEC23AQ15436 765 aa17■□□□□ 0.31
COL4A6-206ENST00000477085 FOXD4L5Q5VV16 416 aaPredicted RBP17■□□□□ 0.31
COL4A6-206ENST00000477085 SGMS1Q86VZ5 419 aa17■□□□□ 0.31
COL4A6-206ENST00000477085 SLC44A5Q8NCS7 719 aa17■□□□□ 0.31
COL4A6-206ENST00000477085 NSUN7Q8NE18 718 aaKnown RBP17■□□□□ 0.31
COL4A6-206ENST00000477085 FOXD4L4Q8WXT5 416 aaPredicted RBP17■□□□□ 0.31
COL4A6-206ENST00000477085 ROBO3Q96MS0 1386 aa16.99■□□□□ 0.31
COL4A6-206ENST00000477085 RANBP6O60518 1105 aaKnown RBP16.99■□□□□ 0.31
COL4A6-206ENST00000477085 CXCL9Q07325 125 aa16.99■□□□□ 0.31
COL4A6-206ENST00000477085 NFIAQ12857 509 aa16.99■□□□□ 0.31
COL4A6-206ENST00000477085 PICALMQ13492 652 aa16.99■□□□□ 0.31
COL4A6-206ENST00000477085 FAM47AQ5JRC9 791 aa16.99■□□□□ 0.31
COL4A6-206ENST00000477085 ZFPM1Q8IX07 1006 aa16.99■□□□□ 0.31
COL4A6-206ENST00000477085 NIM1KQ8IY84 436 aa16.99■□□□□ 0.31
COL4A6-206ENST00000477085 SMARCC2Q8TAQ2 1214 aa16.99■□□□□ 0.31
COL4A6-206ENST00000477085 CHAMP1Q96JM3 812 aa16.99■□□□□ 0.31
COL4A6-206ENST00000477085 SERPINA10Q9UK55 444 aa16.99■□□□□ 0.31
COL4A6-206ENST00000477085 NAV1Q8NEY1 1877 aa16.98■□□□□ 0.31
COL4A6-206ENST00000477085 SRCAPQ6ZRS2 3230 aa16.98■□□□□ 0.31
COL4A6-206ENST00000477085 GOLGA8BA8MQT2 603 aa16.98■□□□□ 0.31
COL4A6-206ENST00000477085 PPFIA3O75145 1194 aa16.98■□□□□ 0.31
COL4A6-206ENST00000477085 POLR3DP05423 398 aaPredicted RBP16.98■□□□□ 0.31
COL4A6-206ENST00000477085 RXRAP19793 462 aa16.98■□□□□ 0.31
COL4A6-206ENST00000477085 RASSF7Q02833 373 aa16.98■□□□□ 0.31
COL4A6-206ENST00000477085 APOA5Q6Q788 366 aa16.98■□□□□ 0.31
COL4A6-206ENST00000477085 PSME4Q14997 1843 aa16.98■□□□□ 0.31
COL4A6-206ENST00000477085 NMT2O60551 498 aa16.97■□□□□ 0.31
COL4A6-206ENST00000477085 CACNB3P54284 484 aa16.97■□□□□ 0.31
COL4A6-206ENST00000477085 PRMT6Q96LA8 375 aaPredicted RBP16.97■□□□□ 0.31
COL4A6-206ENST00000477085 ZSCAN10Q96SZ4 725 aaPredicted RBP16.97■□□□□ 0.31
COL4A6-206ENST00000477085 LLPHQ9BRT6 129 aaKnown RBP16.97■□□□□ 0.31
COL4A6-206ENST00000477085 MTA3Q9BTC8 594 aa16.97■□□□□ 0.31
COL4A6-206ENST00000477085 MYL10Q9BUA6 226 aa16.97■□□□□ 0.31
COL4A6-206ENST00000477085 FAM217BQ9NTX9 383 aaPredicted RBP16.97■□□□□ 0.31
COL4A6-206ENST00000477085 TNKSO95271 1327 aa16.97■□□□□ 0.31
COL4A6-206ENST00000477085 FOCADQ5VW36 1801 aa16.97■□□□□ 0.31
COL4A6-206ENST00000477085 SLC3A2P08195 630 aaKnown RBP16.97■□□□□ 0.31
COL4A6-206ENST00000477085 RBM5P52756 815 aaKnown RBP eCLIP16.97■□□□□ 0.31
COL4A6-206ENST00000477085 PDE4BQ07343 736 aa16.97■□□□□ 0.31
COL4A6-206ENST00000477085 CFAP100Q494V2 611 aa16.97■□□□□ 0.31
COL4A6-206ENST00000477085 CLEC17AQ6ZS10 378 aa16.97■□□□□ 0.31
COL4A6-206ENST00000477085 ENAHQ8N8S7 591 aaPredicted RBP16.97■□□□□ 0.31
COL4A6-206ENST00000477085 DDX11Q96FC9 970 aa16.97■□□□□ 0.31
COL4A6-206ENST00000477085 FHDC1Q9C0D6 1143 aaPredicted RBP16.97■□□□□ 0.31
COL4A6-206ENST00000477085 STX6O43752 255 aa16.96■□□□□ 0.31
COL4A6-206ENST00000477085 FDPSP14324 419 aaKnown RBP16.96■□□□□ 0.31
COL4A6-206ENST00000477085 CDC27P30260 824 aa16.96■□□□□ 0.31
COL4A6-206ENST00000477085 MCM4P33991 863 aa16.96■□□□□ 0.31
COL4A6-206ENST00000477085 ADD1P35611 737 aaKnown RBP16.96■□□□□ 0.31
COL4A6-206ENST00000477085 WTAPQ15007 396 aa16.96■□□□□ 0.31
COL4A6-206ENST00000477085 FAM198AQ9UFP1 575 aa16.96■□□□□ 0.31
COL4A6-206ENST00000477085 LTBP3Q9NS15 1303 aa16.96■□□□□ 0.3
COL4A6-206ENST00000477085 PTPDC1A2A3K4 754 aa16.95■□□□□ 0.3
COL4A6-206ENST00000477085 CDK8P49336 464 aa16.95■□□□□ 0.3
COL4A6-206ENST00000477085 NFXL1Q6ZNB6 911 aa16.95■□□□□ 0.3
COL4A6-206ENST00000477085 C16orf86Q6ZW13 317 aa16.95■□□□□ 0.3
COL4A6-206ENST00000477085 UBAC1Q9BSL1 405 aa16.95■□□□□ 0.3
COL4A6-206ENST00000477085 OSBPL5Q9H0X9 879 aaPredicted RBP16.95■□□□□ 0.3
COL4A6-206ENST00000477085 IL17RBQ9NRM6 502 aa16.95■□□□□ 0.3
COL4A6-206ENST00000477085 MTMR6Q9Y217 621 aa16.95■□□□□ 0.3
COL4A6-206ENST00000477085 ZBTB43O43298 467 aa16.94■□□□□ 0.3
COL4A6-206ENST00000477085 BAG4O95429 457 aaKnown RBP16.94■□□□□ 0.3
COL4A6-206ENST00000477085 SLURP2P0DP57 97 aa16.94■□□□□ 0.3
COL4A6-206ENST00000477085 RASA1P20936 1047 aa16.94■□□□□ 0.3
COL4A6-206ENST00000477085 TFAP4Q01664 338 aa16.94■□□□□ 0.3
COL4A6-206ENST00000477085 GABPAQ06546 454 aa16.94■□□□□ 0.3
COL4A6-206ENST00000477085 CCDC144CPQ8IYA2 1237 aa16.94■□□□□ 0.3
COL4A6-206ENST00000477085 TDRD3Q9H7E2 651 aaKnown RBP16.94■□□□□ 0.3
COL4A6-206ENST00000477085 MYO3BQ8WXR4 1341 aa16.94■□□□□ 0.3
COL4A6-206ENST00000477085 CCDC69A6NI79 296 aa16.94■□□□□ 0.3
COL4A6-206ENST00000477085 SART3Q15020 963 aaKnown RBP16.94■□□□□ 0.3
COL4A6-206ENST00000477085 LARP1BQ659C4 914 aaKnown RBP16.94■□□□□ 0.3
COL4A6-206ENST00000477085 RCSD1Q6JBY9 416 aa16.94■□□□□ 0.3
COL4A6-206ENST00000477085 SH3BP5LQ7L8J4 393 aa16.94■□□□□ 0.3
COL4A6-206ENST00000477085 MICU3Q86XE3 530 aa16.94■□□□□ 0.3
COL4A6-206ENST00000477085 AMOTL1Q8IY63 956 aa16.94■□□□□ 0.3
COL4A6-206ENST00000477085 IDI2Q9BXS1 227 aa16.94■□□□□ 0.3
COL4A6-206ENST00000477085 MKNK2Q9HBH9 465 aa16.94■□□□□ 0.3
COL4A6-206ENST00000477085 SLC12A7Q9Y666 1083 aa16.94■□□□□ 0.3
COL4A6-206ENST00000477085 WDR33Q9C0J8 1336 aaKnown RBP16.93■□□□□ 0.3
COL4A6-206ENST00000477085 SHTN1A0MZ66 631 aa16.93■□□□□ 0.3
COL4A6-206ENST00000477085 ZSCAN22P10073 491 aaPredicted RBP16.93■□□□□ 0.3
COL4A6-206ENST00000477085 METAP2P50579 478 aaKnown RBP eCLIP16.93■□□□□ 0.3
COL4A6-206ENST00000477085 NTRK3Q16288 839 aa16.93■□□□□ 0.3
COL4A6-206ENST00000477085 JDP2Q8WYK2 163 aa16.93■□□□□ 0.3
COL4A6-206ENST00000477085 ERICH2A1L162 156 aa16.92■□□□□ 0.3
COL4A6-206ENST00000477085 SPDYE2BA6NHP3 402 aa16.92■□□□□ 0.3
COL4A6-206ENST00000477085 TSPY2A6NKD2 308 aa16.92■□□□□ 0.3
COL4A6-206ENST00000477085 SPDYE6P0CI01 402 aa16.92■□□□□ 0.3
COL4A6-206ENST00000477085 TCP10Q12799 353 aa16.92■□□□□ 0.3
COL4A6-206ENST00000477085 CIAPIN1Q6FI81 312 aa16.92■□□□□ 0.3
COL4A6-206ENST00000477085 IQCA1Q86XH1 822 aa16.92■□□□□ 0.3
COL4A6-206ENST00000477085 TMTC2Q8N394 836 aa16.92■□□□□ 0.3
COL4A6-206ENST00000477085 AGBL3Q8NEM8 1001 aa16.92■□□□□ 0.3
COL4A6-206ENST00000477085 MYH1P12882 1939 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms