RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 FLT1P17948 1338 aa17.25■□□□□ 0.35
UPF3A-204ENST00000475218 APBB1O00213 710 aa17.24■□□□□ 0.35
UPF3A-204ENST00000475218 LACTBP83111 547 aaPredicted RBP17.24■□□□□ 0.35
UPF3A-204ENST00000475218 PDE3AQ14432 1141 aa17.24■□□□□ 0.35
UPF3A-204ENST00000475218 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.24■□□□□ 0.35
UPF3A-204ENST00000475218 PICK1Q9NRD5 415 aa17.24■□□□□ 0.35
UPF3A-204ENST00000475218 CPA4Q9UI42 421 aa17.24■□□□□ 0.35
UPF3A-204ENST00000475218 CYP7A1P22680 504 aa17.23■□□□□ 0.35
UPF3A-204ENST00000475218 SHROOM1Q2M3G4 852 aaPredicted RBP17.23■□□□□ 0.35
UPF3A-204ENST00000475218 HSP90AB4PQ58FF6 505 aa17.23■□□□□ 0.35
UPF3A-204ENST00000475218 METTL16Q86W50 562 aaKnown RBP17.23■□□□□ 0.35
UPF3A-204ENST00000475218 MAPKAPK5Q8IW41 473 aa17.23■□□□□ 0.35
UPF3A-204ENST00000475218 IGSF3O75054 1194 aa17.23■□□□□ 0.35
UPF3A-204ENST00000475218 IDH1O75874 414 aaKnown RBP17.23■□□□□ 0.35
UPF3A-204ENST00000475218 BAG3O95817 575 aa17.23■□□□□ 0.35
UPF3A-204ENST00000475218 CYP2C8P10632 490 aa17.23■□□□□ 0.35
UPF3A-204ENST00000475218 ARMC5Q96C12 935 aa17.23■□□□□ 0.35
UPF3A-204ENST00000475218 KIF1BPQ96EK5 621 aa17.23■□□□□ 0.35
UPF3A-204ENST00000475218 LOC285556D6RIA3 1793 aa17.22■□□□□ 0.35
UPF3A-204ENST00000475218 RBBP6Q7Z6E9 1792 aaKnown RBP17.22■□□□□ 0.35
UPF3A-204ENST00000475218 CAP2P40123 477 aa17.22■□□□□ 0.35
UPF3A-204ENST00000475218 DDX60LQ5H9U9 1706 aaKnown RBP17.22■□□□□ 0.35
UPF3A-204ENST00000475218 MAGEB6Q8N7X4 407 aa17.22■□□□□ 0.35
UPF3A-204ENST00000475218 MIGA1Q8NAN2 632 aa17.22■□□□□ 0.35
UPF3A-204ENST00000475218 PALD1Q9ULE6 856 aa17.22■□□□□ 0.35
UPF3A-204ENST00000475218 PTCH2Q9Y6C5 1203 aa17.22■□□□□ 0.35
UPF3A-204ENST00000475218 TRIM75PA6NK02 468 aa17.21■□□□□ 0.35
UPF3A-204ENST00000475218 BCRP11274 1271 aa17.21■□□□□ 0.35
UPF3A-204ENST00000475218 PLCG2P16885 1265 aa17.21■□□□□ 0.35
UPF3A-204ENST00000475218 NOL10Q9BSC4 688 aaKnown RBP17.21■□□□□ 0.35
UPF3A-204ENST00000475218 PI4KBQ9UBF8 816 aa17.21■□□□□ 0.35
UPF3A-204ENST00000475218 MYH1P12882 1939 aa17.2■□□□□ 0.34
UPF3A-204ENST00000475218 POTEFA5A3E0 1075 aa17.2■□□□□ 0.34
UPF3A-204ENST00000475218 HMMRO75330 724 aa17.2■□□□□ 0.34
UPF3A-204ENST00000475218 EDC3Q96F86 508 aaKnown RBP17.2■□□□□ 0.34
UPF3A-204ENST00000475218 TRIM47Q96LD4 638 aa17.2■□□□□ 0.34
UPF3A-204ENST00000475218 DHX36Q9H2U1 1008 aaKnown RBP17.2■□□□□ 0.34
UPF3A-204ENST00000475218 HERC5Q9UII4 1024 aaKnown RBP17.2■□□□□ 0.34
UPF3A-204ENST00000475218 ECM2O94769 699 aaPredicted RBP17.2■□□□□ 0.34
UPF3A-204ENST00000475218 TREML2Q5T2D2 321 aa17.2■□□□□ 0.34
UPF3A-204ENST00000475218 CLASRPQ8N2M8 674 aaKnown RBP17.2■□□□□ 0.34
UPF3A-204ENST00000475218 RIOK1Q9BRS2 568 aaKnown RBP17.2■□□□□ 0.34
UPF3A-204ENST00000475218 SAP30BPQ9UHR5 308 aaKnown RBP17.2■□□□□ 0.34
UPF3A-204ENST00000475218 RAB11FIP3O75154 756 aa17.19■□□□□ 0.34
UPF3A-204ENST00000475218 GADL1Q6ZQY3 521 aa17.19■□□□□ 0.34
UPF3A-204ENST00000475218 FASTKD5Q7L8L6 764 aaKnown RBP17.19■□□□□ 0.34
UPF3A-204ENST00000475218 MGAMO43451 1857 aa17.19■□□□□ 0.34
UPF3A-204ENST00000475218 TCRBV5S4A2TA0A5A2 114 aa17.18■□□□□ 0.34
UPF3A-204ENST00000475218 SPP2Q13103 211 aa17.18■□□□□ 0.34
UPF3A-204ENST00000475218 SLC4A8Q2Y0W8 1093 aa17.18■□□□□ 0.34
UPF3A-204ENST00000475218 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.18■□□□□ 0.34
UPF3A-204ENST00000475218 ZNF333Q96JL9 665 aa17.18■□□□□ 0.34
UPF3A-204ENST00000475218 PARK7Q99497 189 aaKnown RBP17.18■□□□□ 0.34
UPF3A-204ENST00000475218 SLC45A1Q9Y2W3 748 aa17.18■□□□□ 0.34
UPF3A-204ENST00000475218 MAP3K12Q12852 859 aa17.17■□□□□ 0.34
UPF3A-204ENST00000475218 SLFNL1Q499Z3 407 aa17.17■□□□□ 0.34
UPF3A-204ENST00000475218 ZNF280CQ8ND82 737 aa17.17■□□□□ 0.34
UPF3A-204ENST00000475218 AGTPBP1Q9UPW5 1226 aa17.17■□□□□ 0.34
UPF3A-204ENST00000475218 KIAA0100Q14667 2235 aaKnown RBP17.17■□□□□ 0.34
UPF3A-204ENST00000475218 PDE4DIPQ5VU43 2346 aa17.17■□□□□ 0.34
UPF3A-204ENST00000475218 GOLIM4O00461 696 aa17.17■□□□□ 0.34
UPF3A-204ENST00000475218 IFIT2P09913 472 aaKnown RBP17.17■□□□□ 0.34
UPF3A-204ENST00000475218 PDE6AP16499 860 aa17.17■□□□□ 0.34
UPF3A-204ENST00000475218 PSMC4P43686 418 aa17.17■□□□□ 0.34
UPF3A-204ENST00000475218 FOXP4Q8IVH2 680 aaPredicted RBP17.17■□□□□ 0.34
UPF3A-204ENST00000475218 SMARCA5O60264 1052 aaPredicted RBP17.16■□□□□ 0.34
UPF3A-204ENST00000475218 CHGBP05060 677 aa17.16■□□□□ 0.34
UPF3A-204ENST00000475218 OSBPP22059 807 aa17.16■□□□□ 0.34
UPF3A-204ENST00000475218 EVX2Q03828 476 aa17.16■□□□□ 0.34
UPF3A-204ENST00000475218 BCL11AQ9H165 835 aa17.16■□□□□ 0.34
UPF3A-204ENST00000475218 USP17L5A8MUK1 530 aa17.15■□□□□ 0.34
UPF3A-204ENST00000475218 GDF11O95390 407 aa17.15■□□□□ 0.34
UPF3A-204ENST00000475218 HMGCS2P54868 508 aa17.15■□□□□ 0.34
UPF3A-204ENST00000475218 SH3D19Q5HYK7 790 aa17.15■□□□□ 0.34
UPF3A-204ENST00000475218 PROCA1Q8NCQ7 364 aaPredicted RBP17.15■□□□□ 0.34
UPF3A-204ENST00000475218 SH3TC2Q8TF17 1288 aa17.15■□□□□ 0.34
UPF3A-204ENST00000475218 DNAJC2Q99543 621 aaKnown RBP17.15■□□□□ 0.34
UPF3A-204ENST00000475218 WDR18Q9BV38 432 aa17.15■□□□□ 0.34
UPF3A-204ENST00000475218 CHMP4BQ9H444 224 aaKnown RBP17.15■□□□□ 0.34
UPF3A-204ENST00000475218 NAV1Q8NEY1 1877 aa17.15■□□□□ 0.34
UPF3A-204ENST00000475218 GNRH1P01148 92 aa17.15■□□□□ 0.34
UPF3A-204ENST00000475218 ATP5JP18859 108 aa17.15■□□□□ 0.34
UPF3A-204ENST00000475218 KIF22Q14807 665 aa17.15■□□□□ 0.34
UPF3A-204ENST00000475218 ARHGEF6Q15052 776 aa17.15■□□□□ 0.34
UPF3A-204ENST00000475218 SLC9C2Q5TAH2 1124 aa17.15■□□□□ 0.34
UPF3A-204ENST00000475218 TMED8Q6PL24 325 aaPredicted RBP17.15■□□□□ 0.34
UPF3A-204ENST00000475218 BOLA2Q9H3K6 86 aa17.15■□□□□ 0.34
UPF3A-204ENST00000475218 SRRDQ9UH36 339 aa17.15■□□□□ 0.34
UPF3A-204ENST00000475218 ZNF532Q9HCE3 1301 aa17.14■□□□□ 0.33
UPF3A-204ENST00000475218 TTF1Q15361 905 aaPredicted RBP17.14■□□□□ 0.33
UPF3A-204ENST00000475218 SLC9C1Q4G0N8 1177 aa17.14■□□□□ 0.33
UPF3A-204ENST00000475218 TATDN1Q6P1N9 297 aa17.14■□□□□ 0.33
UPF3A-204ENST00000475218 ZBTB21Q9ULJ3 1066 aa17.14■□□□□ 0.33
UPF3A-204ENST00000475218 ASNSP08243 561 aa17.13■□□□□ 0.33
UPF3A-204ENST00000475218 EN2P19622 333 aaPredicted RBP17.13■□□□□ 0.33
UPF3A-204ENST00000475218 USP5P45974 858 aa17.13■□□□□ 0.33
UPF3A-204ENST00000475218 PLCD1P51178 756 aa17.13■□□□□ 0.33
UPF3A-204ENST00000475218 CERS3Q8IU89 383 aa17.13■□□□□ 0.33
UPF3A-204ENST00000475218 CRACR2BQ8N4Y2 399 aaPredicted RBP17.13■□□□□ 0.33
UPF3A-204ENST00000475218 HAUS7Q99871 368 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms