RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.02■■□□□ 1.28
CCDC88B-206ENST00000473405 MYH1P12882 1939 aa23.02■■□□□ 1.28
CCDC88B-206ENST00000473405 TRIM75PA6NK02 468 aa23.01■■□□□ 1.27
CCDC88B-206ENST00000473405 ECM2O94769 699 aaPredicted RBP23.01■■□□□ 1.27
CCDC88B-206ENST00000473405 BCRP11274 1271 aa23.01■■□□□ 1.27
CCDC88B-206ENST00000473405 PPP4CP60510 307 aa23.01■■□□□ 1.27
CCDC88B-206ENST00000473405 RRP1BQ14684 758 aaKnown RBP23.01■■□□□ 1.27
CCDC88B-206ENST00000473405 NOL10Q9BSC4 688 aaKnown RBP23.01■■□□□ 1.27
CCDC88B-206ENST00000473405 FLT1P17948 1338 aa23.01■■□□□ 1.27
CCDC88B-206ENST00000473405 DDX60LQ5H9U9 1706 aaKnown RBP23■■□□□ 1.27
CCDC88B-206ENST00000473405 BAG3O95817 575 aa23■■□□□ 1.27
CCDC88B-206ENST00000473405 PSMC4P43686 418 aa23■■□□□ 1.27
CCDC88B-206ENST00000473405 PRPF38BQ5VTL8 546 aaKnown RBP23■■□□□ 1.27
CCDC88B-206ENST00000473405 GADL1Q6ZQY3 521 aa23■■□□□ 1.27
CCDC88B-206ENST00000473405 SLC45A1Q9Y2W3 748 aa23■■□□□ 1.27
CCDC88B-206ENST00000473405 CEP290O15078 2479 aa22.99■■□□□ 1.27
CCDC88B-206ENST00000473405 IGSF3O75054 1194 aa22.99■■□□□ 1.27
CCDC88B-206ENST00000473405 PLCG2P16885 1265 aa22.99■■□□□ 1.27
CCDC88B-206ENST00000473405 SH3TC2Q8TF17 1288 aa22.99■■□□□ 1.27
CCDC88B-206ENST00000473405 HERC5Q9UII4 1024 aaKnown RBP22.99■■□□□ 1.27
CCDC88B-206ENST00000473405 NDUFB9Q9Y6M9 179 aa22.99■■□□□ 1.27
CCDC88B-206ENST00000473405 EN2P19622 333 aaPredicted RBP22.98■■□□□ 1.27
CCDC88B-206ENST00000473405 CAP2P40123 477 aa22.98■■□□□ 1.27
CCDC88B-206ENST00000473405 PRMT2P55345 433 aa22.98■■□□□ 1.27
CCDC88B-206ENST00000473405 NBPF11Q86T75 865 aa22.98■■□□□ 1.27
CCDC88B-206ENST00000473405 ERC1Q8IUD2 1116 aa22.98■■□□□ 1.27
CCDC88B-206ENST00000473405 MAPKAPK5Q8IW41 473 aa22.98■■□□□ 1.27
CCDC88B-206ENST00000473405 TGFBRAP1Q8WUH2 860 aa22.98■■□□□ 1.27
CCDC88B-206ENST00000473405 DNAJC18Q9H819 358 aa22.98■■□□□ 1.27
CCDC88B-206ENST00000473405 SRRDQ9UH36 339 aa22.98■■□□□ 1.27
CCDC88B-206ENST00000473405 OSBPP22059 807 aa22.97■■□□□ 1.27
CCDC88B-206ENST00000473405 AACSQ86V21 672 aa22.97■■□□□ 1.27
CCDC88B-206ENST00000473405 DHX36Q9H2U1 1008 aaKnown RBP22.97■■□□□ 1.27
CCDC88B-206ENST00000473405 PI4KBQ9UBF8 816 aa22.97■■□□□ 1.27
CCDC88B-206ENST00000473405 AGTPBP1Q9UPW5 1226 aa22.97■■□□□ 1.27
CCDC88B-206ENST00000473405 MS4A1P11836 297 aa22.96■■□□□ 1.27
CCDC88B-206ENST00000473405 TREML2Q5T2D2 321 aa22.96■■□□□ 1.27
CCDC88B-206ENST00000473405 METTL16Q86W50 562 aaKnown RBP22.96■■□□□ 1.27
CCDC88B-206ENST00000473405 ANTXR1Q9H6X2 564 aa22.96■■□□□ 1.27
CCDC88B-206ENST00000473405 NAV1Q8NEY1 1877 aa22.96■■□□□ 1.27
CCDC88B-206ENST00000473405 IDH1O75874 414 aaKnown RBP22.95■■□□□ 1.26
CCDC88B-206ENST00000473405 FMNL1O95466 1100 aaPredicted RBP22.95■■□□□ 1.26
CCDC88B-206ENST00000473405 CYP7A1P22680 504 aa22.95■■□□□ 1.26
CCDC88B-206ENST00000473405 DYNLL1P63167 89 aaKnown RBP22.95■■□□□ 1.26
CCDC88B-206ENST00000473405 MYPNQ86TC9 1320 aa22.95■■□□□ 1.26
CCDC88B-206ENST00000473405 SIRT2Q8IXJ6 389 aa22.95■■□□□ 1.26
CCDC88B-206ENST00000473405 PROCA1Q8NCQ7 364 aaPredicted RBP22.95■■□□□ 1.26
CCDC88B-206ENST00000473405 ZNF280CQ8ND82 737 aa22.95■■□□□ 1.26
CCDC88B-206ENST00000473405 IL1RAPL2Q9NP60 686 aa22.95■■□□□ 1.26
CCDC88B-206ENST00000473405 ZBTB40Q9NUA8 1239 aa22.95■■□□□ 1.26
CCDC88B-206ENST00000473405 COG6Q9Y2V7 657 aa22.95■■□□□ 1.26
CCDC88B-206ENST00000473405 MYCP01106 439 aaPredicted RBP22.94■■□□□ 1.26
CCDC88B-206ENST00000473405 JAG1P78504 1218 aa22.94■■□□□ 1.26
CCDC88B-206ENST00000473405 SPP2Q13103 211 aa22.94■■□□□ 1.26
CCDC88B-206ENST00000473405 RHPN1Q8TCX5 695 aa22.94■■□□□ 1.26
CCDC88B-206ENST00000473405 TMEM106CQ9BVX2 250 aa22.94■■□□□ 1.26
CCDC88B-206ENST00000473405 PALD1Q9ULE6 856 aa22.94■■□□□ 1.26
CCDC88B-206ENST00000473405 DDX19BQ9UMR2 479 aa22.94■■□□□ 1.26
CCDC88B-206ENST00000473405 DOCK3Q8IZD9 2030 aa22.94■■□□□ 1.26
CCDC88B-206ENST00000473405 SLC34A2O95436 690 aa22.93■■□□□ 1.26
CCDC88B-206ENST00000473405 HMGCS2P54868 508 aa22.93■■□□□ 1.26
CCDC88B-206ENST00000473405 FCGRTP55899 365 aa22.93■■□□□ 1.26
CCDC88B-206ENST00000473405 PRKCZQ05513 592 aa22.93■■□□□ 1.26
CCDC88B-206ENST00000473405 SHROOM1Q2M3G4 852 aaPredicted RBP22.93■■□□□ 1.26
CCDC88B-206ENST00000473405 HSP90AB4PQ58FF6 505 aa22.93■■□□□ 1.26
CCDC88B-206ENST00000473405 MIGA1Q8NAN2 632 aa22.93■■□□□ 1.26
CCDC88B-206ENST00000473405 TBC1D2Q9BYX2 928 aa22.93■■□□□ 1.26
CCDC88B-206ENST00000473405 RANBP2P49792 3224 aaKnown RBP22.92■■□□□ 1.26
CCDC88B-206ENST00000473405 USP17L5A8MUK1 530 aa22.92■■□□□ 1.26
CCDC88B-206ENST00000473405 HOXD10P28358 340 aa22.92■■□□□ 1.26
CCDC88B-206ENST00000473405 RPAP2Q8IXW5 612 aaPredicted RBP22.92■■□□□ 1.26
CCDC88B-206ENST00000473405 MAGEB6Q8N7X4 407 aa22.92■■□□□ 1.26
CCDC88B-206ENST00000473405 SMCR8Q8TEV9 937 aaPredicted RBP22.92■■□□□ 1.26
CCDC88B-206ENST00000473405 SAP30BPQ9UHR5 308 aaKnown RBP22.92■■□□□ 1.26
CCDC88B-206ENST00000473405 RCAN3Q9UKA8 241 aa22.92■■□□□ 1.26
CCDC88B-206ENST00000473405 SLC4A8Q2Y0W8 1093 aa22.91■■□□□ 1.26
CCDC88B-206ENST00000473405 RAET1EQ8TD07 263 aa22.91■■□□□ 1.26
CCDC88B-206ENST00000473405 GRK4P32298 578 aa22.9■■□□□ 1.26
CCDC88B-206ENST00000473405 MTFR1Q15390 333 aa22.9■■□□□ 1.26
CCDC88B-206ENST00000473405 SH3D19Q5HYK7 790 aa22.9■■□□□ 1.26
CCDC88B-206ENST00000473405 PNMA3Q9UL41 463 aa22.9■■□□□ 1.26
CCDC88B-206ENST00000473405 GABRQQ9UN88 632 aa22.9■■□□□ 1.26
CCDC88B-206ENST00000473405 APBB1O00213 710 aa22.89■■□□□ 1.25
CCDC88B-206ENST00000473405 ASNSP08243 561 aa22.89■■□□□ 1.25
CCDC88B-206ENST00000473405 MAP3K12Q12852 859 aa22.89■■□□□ 1.25
CCDC88B-206ENST00000473405 TMED8Q6PL24 325 aaPredicted RBP22.89■■□□□ 1.25
CCDC88B-206ENST00000473405 CERS3Q8IU89 383 aa22.89■■□□□ 1.25
CCDC88B-206ENST00000473405 FOXP4Q8IVH2 680 aaPredicted RBP22.89■■□□□ 1.25
CCDC88B-206ENST00000473405 CRACR2BQ8N4Y2 399 aaPredicted RBP22.89■■□□□ 1.25
CCDC88B-206ENST00000473405 ANKRD13CQ8N6S4 541 aa22.89■■□□□ 1.25
CCDC88B-206ENST00000473405 KIF1BPQ96EK5 621 aa22.89■■□□□ 1.25
CCDC88B-206ENST00000473405 WDR18Q9BV38 432 aa22.89■■□□□ 1.25
CCDC88B-206ENST00000473405 MYH7P12883 1935 aa22.88■■□□□ 1.25
CCDC88B-206ENST00000473405 PLXNB2O15031 1838 aa22.88■■□□□ 1.25
CCDC88B-206ENST00000473405 HMMRO75330 724 aa22.88■■□□□ 1.25
CCDC88B-206ENST00000473405 GDF11O95390 407 aa22.88■■□□□ 1.25
CCDC88B-206ENST00000473405 MTMR2Q13614 643 aa22.88■■□□□ 1.25
CCDC88B-206ENST00000473405 FAM110CQ1W6H9 321 aa22.88■■□□□ 1.25
CCDC88B-206ENST00000473405 CLASRPQ8N2M8 674 aaKnown RBP22.88■■□□□ 1.25
CCDC88B-206ENST00000473405 RIOK1Q9BRS2 568 aaKnown RBP22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms