RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 BNIP3Q12983 259 aa5.89□□□□□ -1.47
SCN1A-205ENST00000473295 ZBTB37Q5TC79 503 aa5.89□□□□□ -1.47
SCN1A-205ENST00000473295 HDXQ7Z353 690 aa5.89□□□□□ -1.47
SCN1A-205ENST00000473295 ATG4DQ86TL0 474 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-205ENST00000473295 C12orf40Q86WS4 652 aa5.89□□□□□ -1.47
SCN1A-205ENST00000473295 WFDC3Q8IUB2 231 aa5.89□□□□□ -1.47
SCN1A-205ENST00000473295 ASB11Q8WXH4 323 aa5.89□□□□□ -1.47
SCN1A-205ENST00000473295 TNKS2Q9H2K2 1166 aa5.89□□□□□ -1.47
SCN1A-205ENST00000473295 CSADQ9Y600 493 aa5.89□□□□□ -1.47
SCN1A-205ENST00000473295 GNAT3A8MTJ3 354 aa5.88□□□□□ -1.47
SCN1A-205ENST00000473295 PRPF40AO75400 957 aaKnown RBP5.88□□□□□ -1.47
SCN1A-205ENST00000473295 LRIG2O94898 1065 aa5.88□□□□□ -1.47
SCN1A-205ENST00000473295 CELA3AP09093 270 aa5.88□□□□□ -1.47
SCN1A-205ENST00000473295 LMNB1P20700 586 aa5.88□□□□□ -1.47
SCN1A-205ENST00000473295 NTF4P34130 210 aa5.88□□□□□ -1.47
SCN1A-205ENST00000473295 MPRIPQ6WCQ1 1025 aa5.88□□□□□ -1.47
SCN1A-205ENST00000473295 PI4K2BQ8TCG2 481 aa5.88□□□□□ -1.47
SCN1A-205ENST00000473295 SETDB2Q96T68 719 aa5.88□□□□□ -1.47
SCN1A-205ENST00000473295 MAPK8IP1Q9UQF2 711 aa5.88□□□□□ -1.47
SCN1A-205ENST00000473295 SNCAIPQ9Y6H5 919 aa5.88□□□□□ -1.47
SCN1A-205ENST00000473295 ITIH2P19823 946 aa5.87□□□□□ -1.47
SCN1A-205ENST00000473295 CLCN7P51798 805 aa5.87□□□□□ -1.47
SCN1A-205ENST00000473295 RPS26P62854 115 aaKnown RBP5.87□□□□□ -1.47
SCN1A-205ENST00000473295 FOXQ1Q9C009 403 aa5.87□□□□□ -1.47
SCN1A-205ENST00000473295 RC3H2Q9HBD1 1191 aaKnown RBP5.87□□□□□ -1.47
SCN1A-205ENST00000473295 PRDM5Q9NQX1 630 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-205ENST00000473295 PLAGL2Q9UPG8 496 aa5.87□□□□□ -1.47
SCN1A-205ENST00000473295 PAPLNO95428 1278 aa5.86□□□□□ -1.47
SCN1A-205ENST00000473295 CAP2P40123 477 aa5.86□□□□□ -1.47
SCN1A-205ENST00000473295 DIEXFQ68CQ4 756 aaKnown RBP5.86□□□□□ -1.47
SCN1A-205ENST00000473295 TTBK2Q6IQ55 1244 aa5.86□□□□□ -1.47
SCN1A-205ENST00000473295 OGFOD2Q6N063 350 aa5.86□□□□□ -1.47
SCN1A-205ENST00000473295 ZNF746Q6NUN9 644 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-205ENST00000473295 SLC23A3Q6PIS1 610 aa5.86□□□□□ -1.47
SCN1A-205ENST00000473295 ARMCX6Q7L4S7 300 aa5.86□□□□□ -1.47
SCN1A-205ENST00000473295 FAM214BQ7L5A3 538 aa5.86□□□□□ -1.47
SCN1A-205ENST00000473295 POU5F2Q8N7G0 328 aa5.86□□□□□ -1.47
SCN1A-205ENST00000473295 MFSD2AQ8NA29 543 aa5.86□□□□□ -1.47
SCN1A-205ENST00000473295 HEXIM2Q96MH2 286 aaKnown RBP5.86□□□□□ -1.47
SCN1A-205ENST00000473295 TACC3Q9Y6A5 838 aa5.86□□□□□ -1.47
SCN1A-205ENST00000473295 PRAMEF27A3QJZ7 478 aa5.85□□□□□ -1.47
SCN1A-205ENST00000473295 RNASE1P07998 156 aaKnown RBP5.85□□□□□ -1.47
SCN1A-205ENST00000473295 RLBP1P12271 317 aa5.85□□□□□ -1.47
SCN1A-205ENST00000473295 CCDC85BQ15834 202 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-205ENST00000473295 EAPPQ56P03 285 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-205ENST00000473295 RASIP1Q5U651 963 aa5.85□□□□□ -1.47
SCN1A-205ENST00000473295 CYFIP1Q7L576 1253 aa5.85□□□□□ -1.47
SCN1A-205ENST00000473295 PLPPR2Q96GM1 343 aa5.85□□□□□ -1.47
SCN1A-205ENST00000473295 COX4I2Q96KJ9 171 aa5.85□□□□□ -1.47
SCN1A-205ENST00000473295 WNT10AQ9GZT5 417 aa5.85□□□□□ -1.47
SCN1A-205ENST00000473295 AK5Q9Y6K8 562 aa5.85□□□□□ -1.47
SCN1A-205ENST00000473295 U3KQE9 123 aa5.85□□□□□ -1.47
SCN1A-205ENST00000473295 EOMESO95936 686 aa5.84□□□□□ -1.47
SCN1A-205ENST00000473295 ETF1P62495 437 aaKnown RBP5.84□□□□□ -1.47
SCN1A-205ENST00000473295 INPP5AQ14642 412 aa5.84□□□□□ -1.47
SCN1A-205ENST00000473295 LRFN4Q6PJG9 635 aa5.84□□□□□ -1.47
SCN1A-205ENST00000473295 C22orf34Q6ZV56 151 aa5.84□□□□□ -1.47
SCN1A-205ENST00000473295 HID1Q8IV36 788 aa5.84□□□□□ -1.47
SCN1A-205ENST00000473295 SPACA3Q8IXA5 215 aa5.84□□□□□ -1.47
SCN1A-205ENST00000473295 GAL3ST3Q96A11 431 aa5.84□□□□□ -1.47
SCN1A-205ENST00000473295 MBNL3Q9NUK0 354 aaKnown RBP5.84□□□□□ -1.47
SCN1A-205ENST00000473295 CYP7A1P22680 504 aa5.83□□□□□ -1.48
SCN1A-205ENST00000473295 IKZF1Q13422 519 aa5.83□□□□□ -1.48
SCN1A-205ENST00000473295 WIPI1Q5MNZ9 446 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-205ENST00000473295 SFRP5Q5T4F7 317 aa5.83□□□□□ -1.48
SCN1A-205ENST00000473295 SND1Q7KZF4 910 aaKnown RBP eCLIP5.83□□□□□ -1.48
SCN1A-205ENST00000473295 UBE3DQ7Z6J8 389 aa5.83□□□□□ -1.48
SCN1A-205ENST00000473295 LRRN4CLQ8ND94 238 aa5.83□□□□□ -1.48
SCN1A-205ENST00000473295 TMEM40Q8WWA1 233 aa5.83□□□□□ -1.48
SCN1A-205ENST00000473295 FAM168AQ92567 244 aa5.83□□□□□ -1.48
SCN1A-205ENST00000473295 LMCD1Q9NZU5 365 aa5.83□□□□□ -1.48
SCN1A-205ENST00000473295 TPX2Q9ULW0 747 aaKnown RBP5.83□□□□□ -1.48
SCN1A-205ENST00000473295 PITPNM2Q9BZ72 1349 aa5.82□□□□□ -1.48
SCN1A-205ENST00000473295 ITGAEP38570 1179 aa5.82□□□□□ -1.48
SCN1A-205ENST00000473295 CD96P40200 585 aa5.82□□□□□ -1.48
SCN1A-205ENST00000473295 ZP2Q05996 745 aa5.82□□□□□ -1.48
SCN1A-205ENST00000473295 NKPD1Q17RQ9 610 aa5.82□□□□□ -1.48
SCN1A-205ENST00000473295 AGMOQ6ZNB7 445 aa5.82□□□□□ -1.48
SCN1A-205ENST00000473295 MFSD4AQ8N468 514 aa5.82□□□□□ -1.48
SCN1A-205ENST00000473295 FLAD1Q8NFF5 587 aa5.82□□□□□ -1.48
SCN1A-205ENST00000473295 MIPEPQ99797 713 aa5.82□□□□□ -1.48
SCN1A-205ENST00000473295 ADAMTS6Q9UKP5 1117 aa5.82□□□□□ -1.48
SCN1A-205ENST00000473295 ANKRD33BA6NCL7 494 aa5.81□□□□□ -1.48
SCN1A-205ENST00000473295 FAM155AB1AL88 458 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-205ENST00000473295 SLITRK5O94991 958 aa5.81□□□□□ -1.48
SCN1A-205ENST00000473295 ZNF865P0CJ78 1059 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-205ENST00000473295 PTPN11Q06124 597 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-205ENST00000473295 PDE4BQ07343 736 aa5.81□□□□□ -1.48
SCN1A-205ENST00000473295 SLBPQ14493 270 aaKnown RBP eCLIP5.81□□□□□ -1.48
SCN1A-205ENST00000473295 DUSP9Q99956 384 aaKnown RBP5.81□□□□□ -1.48
SCN1A-205ENST00000473295 MIR1-1HGQ9H1L0 117 aa5.81□□□□□ -1.48
SCN1A-205ENST00000473295 FARP2O94887 1054 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-205ENST00000473295 CST3P01034 146 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-205ENST00000473295 KIR3DL1P43629 444 aa5.8□□□□□ -1.48
SCN1A-205ENST00000473295 LIG3P49916 1009 aa5.8□□□□□ -1.48
SCN1A-205ENST00000473295 ST13P50502 369 aaKnown RBP5.8□□□□□ -1.48
SCN1A-205ENST00000473295 LETMD1Q6P1Q0 360 aa5.8□□□□□ -1.48
SCN1A-205ENST00000473295 CCDC120Q96HB5 630 aa5.8□□□□□ -1.48
SCN1A-205ENST00000473295 NOC4LQ9BVI4 516 aaKnown RBP5.8□□□□□ -1.48
SCN1A-205ENST00000473295 FBRSQ9HAH7 460 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms