RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 UBAC1Q9BSL1 405 aa15.07■□□□□ 0
VPS13D-205ENST00000473099 USP40Q9NVE5 1235 aa15.07■□□□□ 0
VPS13D-205ENST00000473099 KIF3AQ9Y496 699 aa15.07■□□□□ 0
VPS13D-205ENST00000473099 SIPA1L1O43166 1804 aa15.07■□□□□ 0
VPS13D-205ENST00000473099 COL2A1P02458 1487 aaPredicted RBP15.07■□□□□ 0
VPS13D-205ENST00000473099 PSMD14O00487 310 aa15.06■□□□□ 0
VPS13D-205ENST00000473099 IFIT3O14879 490 aaKnown RBP15.06■□□□□ 0
VPS13D-205ENST00000473099 USP17L8P0C7I0 530 aa15.06■□□□□ 0
VPS13D-205ENST00000473099 PDCP20941 246 aa15.06■□□□□ 0
VPS13D-205ENST00000473099 RPS12P25398 132 aaKnown RBP15.06■□□□□ 0
VPS13D-205ENST00000473099 RAB3GAP1Q15042 981 aa15.06■□□□□ 0
VPS13D-205ENST00000473099 APOBEC3HQ6NTF7 200 aaKnown RBP15.06■□□□□ 0
VPS13D-205ENST00000473099 SYNE3Q6ZMZ3 975 aa15.06■□□□□ 0
VPS13D-205ENST00000473099 CHST3Q7LGC8 479 aa15.06■□□□□ 0
VPS13D-205ENST00000473099 IGDCC4Q8TDY8 1250 aa15.06■□□□□ 0
VPS13D-205ENST00000473099 GMLQ99445 158 aa15.06■□□□□ 0
VPS13D-205ENST00000473099 LARP6Q9BRS8 491 aaKnown RBP15.06■□□□□ 0
VPS13D-205ENST00000473099 GREB1LQ9C091 1923 aaPredicted RBP15.05■□□□□ 0
VPS13D-205ENST00000473099 CYP2D7A0A087X1C5 515 aa15.05■□□□□ -0
VPS13D-205ENST00000473099 KLF18A0A0U1RQI7 1052 aa15.05■□□□□ -0
VPS13D-205ENST00000473099 CCDC69A6NI79 296 aa15.05■□□□□ -0
VPS13D-205ENST00000473099 RAD17O75943 681 aa15.05■□□□□ -0
VPS13D-205ENST00000473099 PDIA3P30101 505 aaKnown RBP15.05■□□□□ -0
VPS13D-205ENST00000473099 RBM5P52756 815 aaKnown RBP eCLIP15.05■□□□□ -0
VPS13D-205ENST00000473099 HMGN5P82970 282 aaKnown RBP15.05■□□□□ -0
VPS13D-205ENST00000473099 WTAPQ15007 396 aa15.05■□□□□ -0
VPS13D-205ENST00000473099 CDC42EP5Q6NZY7 148 aa15.05■□□□□ -0
VPS13D-205ENST00000473099 ZNF784Q8NCA9 323 aaPredicted RBP15.05■□□□□ -0
VPS13D-205ENST00000473099 MTMR14Q8NCE2 650 aa15.05■□□□□ -0
VPS13D-205ENST00000473099 IDI2Q9BXS1 227 aa15.05■□□□□ -0
VPS13D-205ENST00000473099 NID2Q14112 1375 aa15.04■□□□□ -0
VPS13D-205ENST00000473099 RANBP6O60518 1105 aaKnown RBP15.04■□□□□ -0
VPS13D-205ENST00000473099 WDHD1O75717 1129 aaPredicted RBP15.04■□□□□ -0
VPS13D-205ENST00000473099 HLA-DOAP06340 250 aa15.04■□□□□ -0
VPS13D-205ENST00000473099 EIF6P56537 245 aaKnown RBP15.04■□□□□ -0
VPS13D-205ENST00000473099 PPP2R5BQ15173 497 aa15.04■□□□□ -0
VPS13D-205ENST00000473099 CFAP100Q494V2 611 aa15.04■□□□□ -0
VPS13D-205ENST00000473099 CPLX2Q6PUV4 134 aaKnown RBP15.04■□□□□ -0
VPS13D-205ENST00000473099 NFXL1Q6ZNB6 911 aa15.04■□□□□ -0
VPS13D-205ENST00000473099 C16orf86Q6ZW13 317 aa15.04■□□□□ -0
VPS13D-205ENST00000473099 NECAB1Q8N987 351 aa15.04■□□□□ -0
VPS13D-205ENST00000473099 OSBPL5Q9H0X9 879 aaPredicted RBP15.04■□□□□ -0
VPS13D-205ENST00000473099 DHX36Q9H2U1 1008 aaKnown RBP15.04■□□□□ -0
VPS13D-205ENST00000473099 LY9Q9HBG7 655 aa15.04■□□□□ -0
VPS13D-205ENST00000473099 MKNK2Q9HBH9 465 aa15.04■□□□□ -0
VPS13D-205ENST00000473099 TMOD2Q9NZR1 351 aa15.04■□□□□ -0
VPS13D-205ENST00000473099 SWAP70Q9UH65 585 aa15.04■□□□□ -0
VPS13D-205ENST00000473099 TACC3Q9Y6A5 838 aa15.04■□□□□ -0
VPS13D-205ENST00000473099 WDR33Q9C0J8 1336 aaKnown RBP15.03■□□□□ -0
VPS13D-205ENST00000473099 GOLGA8BA8MQT2 603 aa15.03■□□□□ -0
VPS13D-205ENST00000473099 GRIN3BO60391 1043 aa15.03■□□□□ -0
VPS13D-205ENST00000473099 CYP2D6P10635 497 aa15.03■□□□□ -0
VPS13D-205ENST00000473099 GJB2P29033 226 aa15.03■□□□□ -0
VPS13D-205ENST00000473099 CXCL9Q07325 125 aa15.03■□□□□ -0
VPS13D-205ENST00000473099 ST3GAL1Q11201 340 aa15.03■□□□□ -0
VPS13D-205ENST00000473099 SCRN1Q12765 414 aa15.03■□□□□ -0
VPS13D-205ENST00000473099 STK3Q13188 491 aa15.03■□□□□ -0
VPS13D-205ENST00000473099 APOA5Q6Q788 366 aa15.03■□□□□ -0
VPS13D-205ENST00000473099 ZNF444Q8N0Y2 327 aaPredicted RBP15.03■□□□□ -0
VPS13D-205ENST00000473099 ZSCAN10Q96SZ4 725 aaPredicted RBP15.03■□□□□ -0
VPS13D-205ENST00000473099 NAP1L2Q9ULW6 460 aaPredicted RBP15.03■□□□□ -0
VPS13D-205ENST00000473099 TNKSO95271 1327 aa15.02■□□□□ -0
VPS13D-205ENST00000473099 CCDC196A0A1B0GTZ2 297 aa15.02■□□□□ -0
VPS13D-205ENST00000473099 TSPY2A6NKD2 308 aa15.02■□□□□ -0
VPS13D-205ENST00000473099 ZBTB43O43298 467 aa15.02■□□□□ -0
VPS13D-205ENST00000473099 ENTPD3O75355 529 aa15.02■□□□□ -0
VPS13D-205ENST00000473099 CDKL5O76039 1030 aa15.02■□□□□ -0
VPS13D-205ENST00000473099 PICALMQ13492 652 aa15.02■□□□□ -0
VPS13D-205ENST00000473099 DLGAP5Q15398 846 aa15.02■□□□□ -0
VPS13D-205ENST00000473099 GBP4Q96PP9 640 aa15.02■□□□□ -0
VPS13D-205ENST00000473099 EHD4Q9H223 541 aa15.02■□□□□ -0
VPS13D-205ENST00000473099 INCENPQ9NQS7 918 aa15.02■□□□□ -0
VPS13D-205ENST00000473099 TCP11L1Q9NUJ3 509 aa15.02■□□□□ -0
VPS13D-205ENST00000473099 SAP30BPQ9UHR5 308 aaKnown RBP15.02■□□□□ -0
VPS13D-205ENST00000473099 SLC12A7Q9Y666 1083 aa15.02■□□□□ -0
VPS13D-205ENST00000473099 SPDYE2BA6NHP3 402 aa15.01□□□□□ -0.01
VPS13D-205ENST00000473099 FZD9O00144 591 aa15.01□□□□□ -0.01
VPS13D-205ENST00000473099 CPLX1O14810 134 aa15.01□□□□□ -0.01
VPS13D-205ENST00000473099 SPDYE6P0CI01 402 aa15.01□□□□□ -0.01
VPS13D-205ENST00000473099 CALM1P0DP23 149 aa15.01□□□□□ -0.01
VPS13D-205ENST00000473099 CALM2P0DP24 149 aa15.01□□□□□ -0.01
VPS13D-205ENST00000473099 CALM3P0DP25 149 aa15.01□□□□□ -0.01
VPS13D-205ENST00000473099 LMNB1P20700 586 aa15.01□□□□□ -0.01
VPS13D-205ENST00000473099 CDK8P49336 464 aa15.01□□□□□ -0.01
VPS13D-205ENST00000473099 METAP2P50579 478 aaKnown RBP eCLIP15.01□□□□□ -0.01
VPS13D-205ENST00000473099 PLCD1P51178 756 aa15.01□□□□□ -0.01
VPS13D-205ENST00000473099 SEC23AQ15436 765 aa15.01□□□□□ -0.01
VPS13D-205ENST00000473099 IFIT1BQ5T764 474 aaKnown RBP15.01□□□□□ -0.01
VPS13D-205ENST00000473099 FKBP1CQ5VVH2 108 aa15.01□□□□□ -0.01
VPS13D-205ENST00000473099 STK11IPQ8N1F8 1099 aa15.01□□□□□ -0.01
VPS13D-205ENST00000473099 RGS22Q8NE09 1264 aa15.01□□□□□ -0.01
VPS13D-205ENST00000473099 SMARCC2Q8TAQ2 1214 aa15.01□□□□□ -0.01
VPS13D-205ENST00000473099 DPF2Q92785 391 aa15.01□□□□□ -0.01
VPS13D-205ENST00000473099 BRPF3Q9ULD4 1205 aa15.01□□□□□ -0.01
VPS13D-205ENST00000473099 ATRNL1Q5VV63 1379 aa15□□□□□ -0.01
VPS13D-205ENST00000473099 MYO1BO43795 1136 aa15□□□□□ -0.01
VPS13D-205ENST00000473099 PRDM1O75626 825 aa15□□□□□ -0.01
VPS13D-205ENST00000473099 BRD1O95696 1058 aa15□□□□□ -0.01
VPS13D-205ENST00000473099 PTMSP20962 102 aa15□□□□□ -0.01
VPS13D-205ENST00000473099 RASSF7Q02833 373 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms