RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 GNRH1P01148 92 aa19.21■□□□□ 0.67
CCDC88B-205ENST00000472524 PSMC4P43686 418 aa19.21■□□□□ 0.67
CCDC88B-205ENST00000472524 HSP90AB4PQ58FF6 505 aa19.21■□□□□ 0.67
CCDC88B-205ENST00000472524 BCL11AQ9H165 835 aa19.21■□□□□ 0.67
CCDC88B-205ENST00000472524 NDUFB9Q9Y6M9 179 aa19.21■□□□□ 0.67
CCDC88B-205ENST00000472524 COL2A1P02458 1487 aaPredicted RBP19.21■□□□□ 0.67
CCDC88B-205ENST00000472524 KIAA0100Q14667 2235 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-205ENST00000472524 BAG3O95817 575 aa19.2■□□□□ 0.66
CCDC88B-205ENST00000472524 MAP3K10Q02779 954 aa19.2■□□□□ 0.66
CCDC88B-205ENST00000472524 GPAT2Q6NUI2 795 aa19.2■□□□□ 0.66
CCDC88B-205ENST00000472524 ADGRA1Q86SQ6 560 aa19.2■□□□□ 0.66
CCDC88B-205ENST00000472524 RHPN1Q8TCX5 695 aa19.2■□□□□ 0.66
CCDC88B-205ENST00000472524 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.2■□□□□ 0.66
CCDC88B-205ENST00000472524 ZBTB40Q9NUA8 1239 aa19.2■□□□□ 0.66
CCDC88B-205ENST00000472524 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.2■□□□□ 0.66
CCDC88B-205ENST00000472524 ZHX2Q9Y6X8 837 aa19.2■□□□□ 0.66
CCDC88B-205ENST00000472524 MGAMO43451 1857 aa19.2■□□□□ 0.66
CCDC88B-205ENST00000472524 RBBP6Q7Z6E9 1792 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-205ENST00000472524 HMMRO75330 724 aa19.19■□□□□ 0.66
CCDC88B-205ENST00000472524 IDH1O75874 414 aaKnown RBP19.19■□□□□ 0.66
CCDC88B-205ENST00000472524 CYP2C8P10632 490 aa19.19■□□□□ 0.66
CCDC88B-205ENST00000472524 PTPRAP18433 802 aa19.19■□□□□ 0.66
CCDC88B-205ENST00000472524 OSBPP22059 807 aa19.19■□□□□ 0.66
CCDC88B-205ENST00000472524 PRMT2P55345 433 aa19.19■□□□□ 0.66
CCDC88B-205ENST00000472524 RPAP2Q8IXW5 612 aaPredicted RBP19.19■□□□□ 0.66
CCDC88B-205ENST00000472524 SRRDQ9UH36 339 aa19.19■□□□□ 0.66
CCDC88B-205ENST00000472524 CXCL11O14625 94 aa19.18■□□□□ 0.66
CCDC88B-205ENST00000472524 TBC1D12O60347 775 aa19.18■□□□□ 0.66
CCDC88B-205ENST00000472524 CTNND1O60716 968 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-205ENST00000472524 FMNL1O95466 1100 aaPredicted RBP19.18■□□□□ 0.66
CCDC88B-205ENST00000472524 PLCG2P16885 1265 aa19.18■□□□□ 0.66
CCDC88B-205ENST00000472524 CYP7A1P22680 504 aa19.18■□□□□ 0.66
CCDC88B-205ENST00000472524 MTFR1Q15390 333 aa19.18■□□□□ 0.66
CCDC88B-205ENST00000472524 C20orf194Q5TEA3 1177 aa19.18■□□□□ 0.66
CCDC88B-205ENST00000472524 CCDC84Q86UT8 332 aaPredicted RBP19.18■□□□□ 0.66
CCDC88B-205ENST00000472524 MAPKAPK5Q8IW41 473 aa19.18■□□□□ 0.66
CCDC88B-205ENST00000472524 SIRT2Q8IXJ6 389 aa19.18■□□□□ 0.66
CCDC88B-205ENST00000472524 TGFBRAP1Q8WUH2 860 aa19.18■□□□□ 0.66
CCDC88B-205ENST00000472524 PARK7Q99497 189 aaKnown RBP19.18■□□□□ 0.66
CCDC88B-205ENST00000472524 PPP4CP60510 307 aa19.17■□□□□ 0.66
CCDC88B-205ENST00000472524 GADL1Q6ZQY3 521 aa19.17■□□□□ 0.66
CCDC88B-205ENST00000472524 KIF1BPQ96EK5 621 aa19.17■□□□□ 0.66
CCDC88B-205ENST00000472524 CHMP4BQ9H444 224 aaKnown RBP19.17■□□□□ 0.66
CCDC88B-205ENST00000472524 ANTXR1Q9H6X2 564 aa19.17■□□□□ 0.66
CCDC88B-205ENST00000472524 MYH7P12883 1935 aa19.16■□□□□ 0.66
CCDC88B-205ENST00000472524 A0A0G2JLL6 359 aaPredicted RBP19.16■□□□□ 0.66
CCDC88B-205ENST00000472524 TRIM75PA6NK02 468 aa19.16■□□□□ 0.66
CCDC88B-205ENST00000472524 BCRP11274 1271 aa19.16■□□□□ 0.66
CCDC88B-205ENST00000472524 HOXD10P28358 340 aa19.16■□□□□ 0.66
CCDC88B-205ENST00000472524 DYNLL1P63167 89 aaKnown RBP19.16■□□□□ 0.66
CCDC88B-205ENST00000472524 PRRT2Q7Z6L0 340 aaPredicted RBP19.16■□□□□ 0.66
CCDC88B-205ENST00000472524 CLASRPQ8N2M8 674 aaKnown RBP19.16■□□□□ 0.66
CCDC88B-205ENST00000472524 MAGEB6Q8N7X4 407 aa19.16■□□□□ 0.66
CCDC88B-205ENST00000472524 RAET1EQ8TD07 263 aa19.16■□□□□ 0.66
CCDC88B-205ENST00000472524 SHISA4Q96DD7 197 aa19.16■□□□□ 0.66
CCDC88B-205ENST00000472524 AFG3L2Q9Y4W6 797 aa19.16■□□□□ 0.66
CCDC88B-205ENST00000472524 FLT1P17948 1338 aa19.16■□□□□ 0.66
CCDC88B-205ENST00000472524 MYPNQ86TC9 1320 aa19.16■□□□□ 0.66
CCDC88B-205ENST00000472524 NAV1Q8NEY1 1877 aa19.16■□□□□ 0.66
CCDC88B-205ENST00000472524 LOC285556D6RIA3 1793 aa19.15■□□□□ 0.66
CCDC88B-205ENST00000472524 PRKCZQ05513 592 aa19.15■□□□□ 0.66
CCDC88B-205ENST00000472524 MIGA1Q8NAN2 632 aa19.15■□□□□ 0.66
CCDC88B-205ENST00000472524 IGSF3O75054 1194 aa19.14■□□□□ 0.65
CCDC88B-205ENST00000472524 IFIT2P09913 472 aaKnown RBP19.14■□□□□ 0.65
CCDC88B-205ENST00000472524 GRK4P32298 578 aa19.14■□□□□ 0.65
CCDC88B-205ENST00000472524 PDE3AQ14432 1141 aa19.14■□□□□ 0.65
CCDC88B-205ENST00000472524 FASTKD5Q7L8L6 764 aaKnown RBP19.14■□□□□ 0.65
CCDC88B-205ENST00000472524 DHX36Q9H2U1 1008 aaKnown RBP19.14■□□□□ 0.65
CCDC88B-205ENST00000472524 PI4KBQ9UBF8 816 aa19.14■□□□□ 0.65
CCDC88B-205ENST00000472524 SAP30BPQ9UHR5 308 aaKnown RBP19.14■□□□□ 0.65
CCDC88B-205ENST00000472524 HERC5Q9UII4 1024 aaKnown RBP19.14■□□□□ 0.65
CCDC88B-205ENST00000472524 DOCK3Q8IZD9 2030 aa19.13■□□□□ 0.65
CCDC88B-205ENST00000472524 H0YGN5 161 aa19.13■□□□□ 0.65
CCDC88B-205ENST00000472524 RAB11FIP3O75154 756 aa19.13■□□□□ 0.65
CCDC88B-205ENST00000472524 FCGRTP55899 365 aa19.13■□□□□ 0.65
CCDC88B-205ENST00000472524 MAP3K12Q12852 859 aa19.13■□□□□ 0.65
CCDC88B-205ENST00000472524 RRP1BQ14684 758 aaKnown RBP19.13■□□□□ 0.65
CCDC88B-205ENST00000472524 PALD1Q9ULE6 856 aa19.13■□□□□ 0.65
CCDC88B-205ENST00000472524 GABRQQ9UN88 632 aa19.13■□□□□ 0.65
CCDC88B-205ENST00000472524 COLQQ9Y215 455 aaPredicted RBP19.13■□□□□ 0.65
CCDC88B-205ENST00000472524 CCL5P13501 91 aa19.12■□□□□ 0.65
CCDC88B-205ENST00000472524 CAP2P40123 477 aa19.12■□□□□ 0.65
CCDC88B-205ENST00000472524 CRACR2BQ8N4Y2 399 aaPredicted RBP19.12■□□□□ 0.65
CCDC88B-205ENST00000472524 DNAJC2Q99543 621 aaKnown RBP19.12■□□□□ 0.65
CCDC88B-205ENST00000472524 TRIM34Q9BYJ4 488 aa19.12■□□□□ 0.65
CCDC88B-205ENST00000472524 USP5P45974 858 aa19.11■□□□□ 0.65
CCDC88B-205ENST00000472524 FXR1P51114 621 aaKnown RBP eCLIP19.11■□□□□ 0.65
CCDC88B-205ENST00000472524 BIN2Q9UBW5 565 aaPredicted RBP19.11■□□□□ 0.65
CCDC88B-205ENST00000472524 MYH8P13535 1937 aa19.1■□□□□ 0.65
CCDC88B-205ENST00000472524 HLA-DOAP06340 250 aa19.1■□□□□ 0.65
CCDC88B-205ENST00000472524 SPP2Q13103 211 aa19.1■□□□□ 0.65
CCDC88B-205ENST00000472524 TTF1Q15361 905 aaPredicted RBP19.1■□□□□ 0.65
CCDC88B-205ENST00000472524 DNAJC18Q9H819 358 aa19.1■□□□□ 0.65
CCDC88B-205ENST00000472524 DDX60LQ5H9U9 1706 aaKnown RBP19.1■□□□□ 0.65
CCDC88B-205ENST00000472524 USP17L5A8MUK1 530 aa19.09■□□□□ 0.65
CCDC88B-205ENST00000472524 GOLIM4O00461 696 aa19.09■□□□□ 0.65
CCDC88B-205ENST00000472524 GJB1P08034 283 aa19.09■□□□□ 0.65
CCDC88B-205ENST00000472524 GJA8P48165 433 aa19.09■□□□□ 0.65
CCDC88B-205ENST00000472524 CERS3Q8IU89 383 aa19.09■□□□□ 0.65
CCDC88B-205ENST00000472524 ZNF280CQ8ND82 737 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms