RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 TBC1D8BQ0IIM8 1120 aa14.77□□□□□ -0.05
COL6A3-209ENST00000472056 NOC4LQ9BVI4 516 aaKnown RBP14.77□□□□□ -0.05
COL6A3-209ENST00000472056 HELLSQ9NRZ9 838 aa14.77□□□□□ -0.05
COL6A3-209ENST00000472056 MIS12Q9H081 205 aa14.76□□□□□ -0.05
COL6A3-209ENST00000472056 EXOC4Q96A65 974 aa14.76□□□□□ -0.05
COL6A3-209ENST00000472056 ACTR5Q9H9F9 607 aaPredicted RBP14.76□□□□□ -0.05
COL6A3-209ENST00000472056 PPP1R9AQ9ULJ8 1098 aa14.76□□□□□ -0.05
COL6A3-209ENST00000472056 GRM8O00222 908 aa14.76□□□□□ -0.05
COL6A3-209ENST00000472056 NAPAP54920 295 aa14.76□□□□□ -0.05
COL6A3-209ENST00000472056 PFDN1O60925 122 aa14.76□□□□□ -0.05
COL6A3-209ENST00000472056 MCTP2Q6DN12 878 aa14.76□□□□□ -0.05
COL6A3-209ENST00000472056 TEKT1Q969V4 418 aa14.76□□□□□ -0.05
COL6A3-209ENST00000472056 IQSEC3Q9UPP2 1182 aaPredicted RBP14.76□□□□□ -0.05
COL6A3-209ENST00000472056 LMNAP02545 664 aaKnown RBP14.76□□□□□ -0.05
COL6A3-209ENST00000472056 KRT3P12035 628 aa14.76□□□□□ -0.05
COL6A3-209ENST00000472056 LMNB2Q03252 620 aa14.76□□□□□ -0.05
COL6A3-209ENST00000472056 PAK1Q13153 545 aa14.76□□□□□ -0.05
COL6A3-209ENST00000472056 MUM1L1Q5H9M0 696 aa14.76□□□□□ -0.05
COL6A3-209ENST00000472056 PPP1R2P3Q6NXS1 205 aa14.76□□□□□ -0.05
COL6A3-209ENST00000472056 FBXO41Q8TF61 875 aa14.76□□□□□ -0.05
COL6A3-209ENST00000472056 MYD88Q99836 296 aa14.76□□□□□ -0.05
COL6A3-209ENST00000472056 MAP3K2Q9Y2U5 619 aa14.76□□□□□ -0.05
COL6A3-209ENST00000472056 PPIP5K1Q6PFW1 1433 aa14.76□□□□□ -0.05
COL6A3-209ENST00000472056 TCP1P17987 556 aaKnown RBP14.76□□□□□ -0.05
COL6A3-209ENST00000472056 RNF14Q9UBS8 474 aa14.76□□□□□ -0.05
COL6A3-209ENST00000472056 TXLNGQ9NUQ3 528 aa14.75□□□□□ -0.05
COL6A3-209ENST00000472056 ABCC5O15440 1437 aa14.75□□□□□ -0.05
COL6A3-209ENST00000472056 IWS1Q96ST2 819 aa14.75□□□□□ -0.05
COL6A3-209ENST00000472056 DEXIO95424 95 aa14.75□□□□□ -0.05
COL6A3-209ENST00000472056 GDAP1L1Q96MZ0 367 aa14.75□□□□□ -0.05
COL6A3-209ENST00000472056 BZW2Q9Y6E2 419 aaKnown RBP14.75□□□□□ -0.05
COL6A3-209ENST00000472056 RPS6KA1Q15418 735 aa14.75□□□□□ -0.05
COL6A3-209ENST00000472056 NLRP12P59046 1061 aa14.75□□□□□ -0.05
COL6A3-209ENST00000472056 KRT71Q3SY84 523 aa14.75□□□□□ -0.05
COL6A3-209ENST00000472056 SEPT8Q92599 483 aa14.75□□□□□ -0.05
COL6A3-209ENST00000472056 MAGEF1Q9HAY2 307 aa14.75□□□□□ -0.05
COL6A3-209ENST00000472056 PAG1Q9NWQ8 432 aa14.75□□□□□ -0.05
COL6A3-209ENST00000472056 DDX41Q9UJV9 622 aaKnown RBP14.75□□□□□ -0.05
COL6A3-209ENST00000472056 ABCA10Q8WWZ4 1543 aa14.75□□□□□ -0.05
COL6A3-209ENST00000472056 UNC13AQ9UPW8 1703 aa14.75□□□□□ -0.05
COL6A3-209ENST00000472056 RSPH3Q86UC2 560 aa14.75□□□□□ -0.05
COL6A3-209ENST00000472056 CAPN7Q9Y6W3 813 aa14.75□□□□□ -0.05
COL6A3-209ENST00000472056 ASIC2Q16515 512 aa14.75□□□□□ -0.05
COL6A3-209ENST00000472056 IFIH1Q9BYX4 1025 aaKnown RBP14.74□□□□□ -0.05
COL6A3-209ENST00000472056 FAF1Q9UNN5 650 aaPredicted RBP14.74□□□□□ -0.05
COL6A3-209ENST00000472056 CCDC125Q86Z20 511 aa14.74□□□□□ -0.05
COL6A3-209ENST00000472056 EFHD1Q9BUP0 239 aa14.74□□□□□ -0.05
COL6A3-209ENST00000472056 STX8Q9UNK0 236 aa14.74□□□□□ -0.05
COL6A3-209ENST00000472056 CEP104O60308 925 aa14.74□□□□□ -0.05
COL6A3-209ENST00000472056 ATP8B2P98198 1209 aa14.74□□□□□ -0.05
COL6A3-209ENST00000472056 ISM2Q6H9L7 571 aa14.74□□□□□ -0.05
COL6A3-209ENST00000472056 CCDC89Q8N998 374 aa14.74□□□□□ -0.05
COL6A3-209ENST00000472056 KIFC2Q96AC6 838 aa14.74□□□□□ -0.05
COL6A3-209ENST00000472056 CCDC8Q9H0W5 538 aaPredicted RBP14.74□□□□□ -0.05
COL6A3-209ENST00000472056 NPC1L1Q9UHC9 1359 aa14.74□□□□□ -0.05
COL6A3-209ENST00000472056 PRG4Q92954 1404 aaPredicted RBP14.74□□□□□ -0.05
COL6A3-209ENST00000472056 RRS1Q15050 365 aaKnown RBP14.74□□□□□ -0.05
COL6A3-209ENST00000472056 CREB3L3Q68CJ9 461 aa14.74□□□□□ -0.05
COL6A3-209ENST00000472056 GSDMBQ8TAX9 411 aa14.74□□□□□ -0.05
COL6A3-209ENST00000472056 KCNH3Q9ULD8 1083 aa14.74□□□□□ -0.05
COL6A3-209ENST00000472056 LDHAL6AQ6ZMR3 332 aa14.74□□□□□ -0.05
COL6A3-209ENST00000472056 DHX58Q96C10 678 aa14.74□□□□□ -0.05
COL6A3-209ENST00000472056 SKIP12755 728 aa14.74□□□□□ -0.05
COL6A3-209ENST00000472056 STX2P32856 288 aa14.74□□□□□ -0.05
COL6A3-209ENST00000472056 YWHAEP62258 255 aaKnown RBP14.74□□□□□ -0.05
COL6A3-209ENST00000472056 KARSQ15046 597 aaKnown RBP14.74□□□□□ -0.05
COL6A3-209ENST00000472056 CALR3Q96L12 384 aaKnown RBP14.74□□□□□ -0.05
COL6A3-209ENST00000472056 OPHN1O60890 802 aa14.73□□□□□ -0.05
COL6A3-209ENST00000472056 SNRPA1P09661 255 aaKnown RBP14.73□□□□□ -0.05
COL6A3-209ENST00000472056 MRFAP1L1Q96HT8 127 aa14.73□□□□□ -0.05
COL6A3-209ENST00000472056 MARCKSP29966 332 aaPredicted RBP14.73□□□□□ -0.05
COL6A3-209ENST00000472056 AK2P54819 239 aa14.73□□□□□ -0.05
COL6A3-209ENST00000472056 RBM6P78332 1123 aaKnown RBP14.73□□□□□ -0.05
COL6A3-209ENST00000472056 FANCCQ00597 558 aa14.73□□□□□ -0.05
COL6A3-209ENST00000472056 MCM10Q7L590 875 aa14.73□□□□□ -0.05
COL6A3-209ENST00000472056 CCDC117Q8IWD4 279 aaPredicted RBP14.73□□□□□ -0.05
COL6A3-209ENST00000472056 BAIAP2L1Q9UHR4 511 aa14.73□□□□□ -0.05
COL6A3-209ENST00000472056 U2AF2P26368 475 aaKnown RBP eCLIP14.73□□□□□ -0.05
COL6A3-209ENST00000472056 ANKRD20A4Q4UJ75 823 aa14.73□□□□□ -0.05
COL6A3-209ENST00000472056 ANKRD20A8PQ5CZ79 823 aa14.73□□□□□ -0.05
COL6A3-209ENST00000472056 ANKRD20A2Q5SQ80 823 aa14.73□□□□□ -0.05
COL6A3-209ENST00000472056 ANKRD20A1Q5TYW2 823 aa14.73□□□□□ -0.05
COL6A3-209ENST00000472056 TRMT112Q9UI30 125 aaKnown RBP14.73□□□□□ -0.05
COL6A3-209ENST00000472056 ORC6Q9Y5N6 252 aa14.73□□□□□ -0.05
COL6A3-209ENST00000472056 A0A1B0GVL5 298 aa14.73□□□□□ -0.05
COL6A3-209ENST00000472056 CTTNBP2NLQ9P2B4 639 aa14.73□□□□□ -0.05
COL6A3-209ENST00000472056 SCOCQ9UIL1 159 aa14.73□□□□□ -0.05
COL6A3-209ENST00000472056 PHLPP2Q6ZVD8 1323 aa14.73□□□□□ -0.05
COL6A3-209ENST00000472056 PEX26Q7Z412 305 aa14.73□□□□□ -0.05
COL6A3-209ENST00000472056 USP26Q9BXU7 913 aa14.73□□□□□ -0.05
COL6A3-209ENST00000472056 LRRC23Q53EV4 343 aaPredicted RBP14.73□□□□□ -0.05
COL6A3-209ENST00000472056 TSC1Q92574 1164 aa14.73□□□□□ -0.05
COL6A3-209ENST00000472056 NMIQ13287 307 aaPredicted RBP14.72□□□□□ -0.05
COL6A3-209ENST00000472056 CDK13Q14004 1512 aaKnown RBP14.72□□□□□ -0.05
COL6A3-209ENST00000472056 ABCA5Q8WWZ7 1642 aa14.72□□□□□ -0.05
COL6A3-209ENST00000472056 CCDC151A5D8V7 595 aa14.72□□□□□ -0.05
COL6A3-209ENST00000472056 CTNNA1P35221 906 aaKnown RBP14.72□□□□□ -0.05
COL6A3-209ENST00000472056 HEATR3Q7Z4Q2 680 aa14.72□□□□□ -0.05
COL6A3-209ENST00000472056 ANKLE2Q86XL3 938 aa14.72□□□□□ -0.05
COL6A3-209ENST00000472056 RNF8O76064 485 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms