RNA–Protein interactions for RNA: ENST00000469232.5

NPHP3-204, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,616 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-204ENST00000469232 MARVELD3Q96A59 401 aa9.71□□□□□ -0.85
NPHP3-204ENST00000469232 PRMT6Q96LA8 375 aaPredicted RBP9.71□□□□□ -0.85
NPHP3-204ENST00000469232 LAMB1P07942 1786 aa9.71□□□□□ -0.85
NPHP3-204ENST00000469232 ZKSCAN1P17029 563 aaPredicted RBP9.71□□□□□ -0.86
NPHP3-204ENST00000469232 IMMTQ16891 758 aaKnown RBP9.71□□□□□ -0.86
NPHP3-204ENST00000469232 CFAP100Q494V2 611 aa9.71□□□□□ -0.86
NPHP3-204ENST00000469232 C12orf60Q5U649 245 aa9.71□□□□□ -0.86
NPHP3-204ENST00000469232 STOX1Q6ZVD7 989 aa9.71□□□□□ -0.86
NPHP3-204ENST00000469232 TEX11Q8IYF3 940 aa9.71□□□□□ -0.86
NPHP3-204ENST00000469232 OGFOD1Q8N543 542 aa9.71□□□□□ -0.86
NPHP3-204ENST00000469232 SDR42E1Q8WUS8 393 aa9.71□□□□□ -0.86
NPHP3-204ENST00000469232 FBXW7Q969H0 707 aa9.71□□□□□ -0.86
NPHP3-204ENST00000469232 TTC14Q96N46 770 aa9.71□□□□□ -0.86
NPHP3-204ENST00000469232 NOL10Q9BSC4 688 aaKnown RBP9.71□□□□□ -0.86
NPHP3-204ENST00000469232 AGXT2Q9BYV1 514 aa9.71□□□□□ -0.86
NPHP3-204ENST00000469232 NAPBQ9H115 298 aa9.71□□□□□ -0.86
NPHP3-204ENST00000469232 RNF181Q9P0P0 153 aa9.71□□□□□ -0.86
NPHP3-204ENST00000469232 ARPP21Q9UBL0 812 aaPredicted RBP9.71□□□□□ -0.86
NPHP3-204ENST00000469232 FAM198AQ9UFP1 575 aa9.71□□□□□ -0.86
NPHP3-204ENST00000469232 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.71□□□□□ -0.86
NPHP3-204ENST00000469232 TACC3Q9Y6A5 838 aa9.71□□□□□ -0.86
NPHP3-204ENST00000469232 NAV1Q8NEY1 1877 aa9.71□□□□□ -0.86
NPHP3-204ENST00000469232 FLT1P17948 1338 aa9.7□□□□□ -0.86
NPHP3-204ENST00000469232 WDR19Q8NEZ3 1342 aa9.7□□□□□ -0.86
NPHP3-204ENST00000469232 F8W031 263 aaPredicted RBP9.7□□□□□ -0.86
NPHP3-204ENST00000469232 KIF3CO14782 793 aa9.7□□□□□ -0.86
NPHP3-204ENST00000469232 ENTPD3O75355 529 aa9.7□□□□□ -0.86
NPHP3-204ENST00000469232 GABPAQ06546 454 aa9.7□□□□□ -0.86
NPHP3-204ENST00000469232 GPR162Q16538 588 aa9.7□□□□□ -0.86
NPHP3-204ENST00000469232 ADCK5Q3MIX3 580 aa9.7□□□□□ -0.86
NPHP3-204ENST00000469232 STAG1Q8WVM7 1258 aa9.7□□□□□ -0.86
NPHP3-204ENST00000469232 MTA3Q9BTC8 594 aa9.7□□□□□ -0.86
NPHP3-204ENST00000469232 RTN4Q9NQC3 1192 aaKnown RBP9.7□□□□□ -0.86
NPHP3-204ENST00000469232 DDX4Q9NQI0 724 aaKnown RBP9.7□□□□□ -0.86
NPHP3-204ENST00000469232 USP40Q9NVE5 1235 aa9.7□□□□□ -0.86
NPHP3-204ENST00000469232 GPRC5DQ9NZD1 345 aa9.7□□□□□ -0.86
NPHP3-204ENST00000469232 PGAP2Q9UHJ9 254 aa9.7□□□□□ -0.86
NPHP3-204ENST00000469232 PCDHAC2Q9Y5I4 1007 aa9.7□□□□□ -0.86
NPHP3-204ENST00000469232 BAZ2AQ9UIF9 1905 aaKnown RBP9.69□□□□□ -0.86
NPHP3-204ENST00000469232 USP17L12C9JPN9 530 aa9.69□□□□□ -0.86
NPHP3-204ENST00000469232 USP17L21D6R901 530 aa9.69□□□□□ -0.86
NPHP3-204ENST00000469232 E7EWF7 191 aa9.69□□□□□ -0.86
NPHP3-204ENST00000469232 WNT10BO00744 389 aa9.69□□□□□ -0.86
NPHP3-204ENST00000469232 ZNF213O14771 459 aa9.69□□□□□ -0.86
NPHP3-204ENST00000469232 ORC4O43929 436 aa9.69□□□□□ -0.86
NPHP3-204ENST00000469232 PSMA5P28066 241 aa9.69□□□□□ -0.86
NPHP3-204ENST00000469232 EXOSC10Q01780 885 aaKnown RBP9.69□□□□□ -0.86
NPHP3-204ENST00000469232 MAP3K10Q02779 954 aa9.69□□□□□ -0.86
NPHP3-204ENST00000469232 PPARAQ07869 468 aa9.69□□□□□ -0.86
NPHP3-204ENST00000469232 DLGAP5Q15398 846 aa9.69□□□□□ -0.86
NPHP3-204ENST00000469232 FAM83AQ86UY5 434 aa9.69□□□□□ -0.86
NPHP3-204ENST00000469232 TBC1D10CQ8IV04 446 aa9.69□□□□□ -0.86
NPHP3-204ENST00000469232 MB21D2Q8IYB1 491 aaPredicted RBP9.69□□□□□ -0.86
NPHP3-204ENST00000469232 TGFBRAP1Q8WUH2 860 aa9.69□□□□□ -0.86
NPHP3-204ENST00000469232 EHD4Q9H223 541 aa9.69□□□□□ -0.86
NPHP3-204ENST00000469232 MYOZ2Q9NPC6 264 aa9.69□□□□□ -0.86
NPHP3-204ENST00000469232 PCDH10Q9P2E7 1040 aa9.69□□□□□ -0.86
NPHP3-204ENST00000469232 CNOT7Q9UIV1 285 aaKnown RBP9.69□□□□□ -0.86
NPHP3-204ENST00000469232 SIPA1L1O43166 1804 aa9.69□□□□□ -0.86
NPHP3-204ENST00000469232 WDR90Q96KV7 1748 aa9.68□□□□□ -0.86
NPHP3-204ENST00000469232 CNTNAP1P78357 1384 aa9.68□□□□□ -0.86
NPHP3-204ENST00000469232 C2orf72A6NCS6 295 aa9.68□□□□□ -0.86
NPHP3-204ENST00000469232 HMGB1P09429 215 aaKnown RBP9.68□□□□□ -0.86
NPHP3-204ENST00000469232 TDO2P48775 406 aa9.68□□□□□ -0.86
NPHP3-204ENST00000469232 NFIAQ12857 509 aa9.68□□□□□ -0.86
NPHP3-204ENST00000469232 COL9A3Q14050 684 aaPredicted RBP9.68□□□□□ -0.86
NPHP3-204ENST00000469232 AKNAD1Q5T1N1 836 aa9.68□□□□□ -0.86
NPHP3-204ENST00000469232 ZNF710Q8N1W2 664 aa9.68□□□□□ -0.86
NPHP3-204ENST00000469232 NEK1Q96PY6 1258 aa9.68□□□□□ -0.86
NPHP3-204ENST00000469232 OSBPL5Q9H0X9 879 aaPredicted RBP9.68□□□□□ -0.86
NPHP3-204ENST00000469232 ZNF70Q9UC06 446 aaPredicted RBP9.68□□□□□ -0.86
NPHP3-204ENST00000469232 MYH1P12882 1939 aa9.68□□□□□ -0.86
NPHP3-204ENST00000469232 SHTN1A0MZ66 631 aa9.67□□□□□ -0.86
NPHP3-204ENST00000469232 GLTPD2A6NH11 291 aa9.67□□□□□ -0.86
NPHP3-204ENST00000469232 APPP05067 770 aa9.67□□□□□ -0.86
NPHP3-204ENST00000469232 RPS6KB1P23443 525 aa9.67□□□□□ -0.86
NPHP3-204ENST00000469232 EVCP57679 992 aa9.67□□□□□ -0.86
NPHP3-204ENST00000469232 RUFY3Q7L099 469 aa9.67□□□□□ -0.86
NPHP3-204ENST00000469232 SH3BP5LQ7L8J4 393 aa9.67□□□□□ -0.86
NPHP3-204ENST00000469232 DDRGK1Q96HY6 314 aa9.67□□□□□ -0.86
NPHP3-204ENST00000469232 DHX36Q9H2U1 1008 aaKnown RBP9.67□□□□□ -0.86
NPHP3-204ENST00000469232 RNF41Q9H4P4 317 aaPredicted RBP9.67□□□□□ -0.86
NPHP3-204ENST00000469232 TDRD3Q9H7E2 651 aaKnown RBP9.67□□□□□ -0.86
NPHP3-204ENST00000469232 CNNM2Q9H8M5 875 aa9.67□□□□□ -0.86
NPHP3-204ENST00000469232 RYDENQ9NUL5 291 aaKnown RBP9.67□□□□□ -0.86
NPHP3-204ENST00000469232 SCN4AP35499 1836 aa9.67□□□□□ -0.86
NPHP3-204ENST00000469232 SMIM22K7EJ46 135 aa9.67□□□□□ -0.86
NPHP3-204ENST00000469232 EGFRP00533 1210 aa9.67□□□□□ -0.86
NPHP3-204ENST00000469232 USP5P45974 858 aa9.67□□□□□ -0.86
NPHP3-204ENST00000469232 NOVP48745 357 aa9.67□□□□□ -0.86
NPHP3-204ENST00000469232 PLCD1P51178 756 aa9.67□□□□□ -0.86
NPHP3-204ENST00000469232 EMP3P54852 163 aa9.67□□□□□ -0.86
NPHP3-204ENST00000469232 C16orf86Q6ZW13 317 aa9.67□□□□□ -0.86
NPHP3-204ENST00000469232 DHX32Q7L7V1 743 aaKnown RBP9.67□□□□□ -0.86
NPHP3-204ENST00000469232 MAPKAPK5Q8IW41 473 aa9.67□□□□□ -0.86
NPHP3-204ENST00000469232 NKX2-3Q8TAU0 364 aa9.67□□□□□ -0.86
NPHP3-204ENST00000469232 FAM151AQ8WW52 585 aa9.67□□□□□ -0.86
NPHP3-204ENST00000469232 JAKMIP1Q96N16 626 aaKnown RBP9.67□□□□□ -0.86
NPHP3-204ENST00000469232 MCM9Q9NXL9 1143 aa9.67□□□□□ -0.86
NPHP3-204ENST00000469232 PITPNM2Q9BZ72 1349 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms