RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 SMARCC2Q8TAQ2 1214 aa22.25■■□□□ 1.15
SMC4-209ENST00000468653 DDX11Q96FC9 970 aa22.25■■□□□ 1.15
SMC4-209ENST00000468653 SENP2Q9HC62 589 aa22.25■■□□□ 1.15
SMC4-209ENST00000468653 FLT1P17948 1338 aa22.24■■□□□ 1.15
SMC4-209ENST00000468653 CTDNEP1O95476 244 aa22.24■■□□□ 1.15
SMC4-209ENST00000468653 CRKP46108 304 aa22.24■■□□□ 1.15
SMC4-209ENST00000468653 SLC12A7Q9Y666 1083 aa22.24■■□□□ 1.15
SMC4-209ENST00000468653 SCN9AQ15858 1988 aa22.24■■□□□ 1.15
SMC4-209ENST00000468653 PTPDC1A2A3K4 754 aa22.23■■□□□ 1.15
SMC4-209ENST00000468653 VPS37CA5D8V6 355 aaPredicted RBP22.23■■□□□ 1.15
SMC4-209ENST00000468653 YDJCA8MPS7 323 aa22.23■■□□□ 1.15
SMC4-209ENST00000468653 CPLX1O14810 134 aa22.23■■□□□ 1.15
SMC4-209ENST00000468653 IQCA1Q86XH1 822 aa22.23■■□□□ 1.15
SMC4-209ENST00000468653 MRIQ9BWK5 157 aa22.23■■□□□ 1.15
SMC4-209ENST00000468653 USP40Q9NVE5 1235 aa22.23■■□□□ 1.15
SMC4-209ENST00000468653 KIF3AQ9Y496 699 aa22.23■■□□□ 1.15
SMC4-209ENST00000468653 ZBTB43O43298 467 aa22.22■■□□□ 1.15
SMC4-209ENST00000468653 PTGER2P43116 358 aa22.22■■□□□ 1.15
SMC4-209ENST00000468653 METAP2P50579 478 aaKnown RBP eCLIP22.22■■□□□ 1.15
SMC4-209ENST00000468653 NAV1Q8NEY1 1877 aa22.22■■□□□ 1.15
SMC4-209ENST00000468653 MTMR6Q9Y217 621 aa22.22■■□□□ 1.15
SMC4-209ENST00000468653 HDLBPQ00341 1268 aaKnown RBP22.22■■□□□ 1.15
SMC4-209ENST00000468653 MCTP1Q6DN14 999 aa22.22■■□□□ 1.15
SMC4-209ENST00000468653 MICU3Q86XE3 530 aa22.22■■□□□ 1.15
SMC4-209ENST00000468653 ZDHHC15Q96MV8 337 aa22.22■■□□□ 1.15
SMC4-209ENST00000468653 ZSCAN10Q96SZ4 725 aaPredicted RBP22.22■■□□□ 1.15
SMC4-209ENST00000468653 TNKSO95271 1327 aa22.22■■□□□ 1.15
SMC4-209ENST00000468653 PTMSP20962 102 aa22.21■■□□□ 1.15
SMC4-209ENST00000468653 RBM5P52756 815 aaKnown RBP eCLIP22.21■■□□□ 1.15
SMC4-209ENST00000468653 APOBEC3HQ6NTF7 200 aaKnown RBP22.21■■□□□ 1.15
SMC4-209ENST00000468653 DYNLL2Q96FJ2 89 aa22.21■■□□□ 1.15
SMC4-209ENST00000468653 MKNK2Q9HBH9 465 aa22.21■■□□□ 1.15
SMC4-209ENST00000468653 ROBO3Q96MS0 1386 aa22.21■■□□□ 1.15
SMC4-209ENST00000468653 F13A1P00488 732 aa22.2■■□□□ 1.14
SMC4-209ENST00000468653 NT5C2P49902 561 aa22.2■■□□□ 1.14
SMC4-209ENST00000468653 PLCD1P51178 756 aa22.2■■□□□ 1.14
SMC4-209ENST00000468653 PICALMQ13492 652 aa22.2■■□□□ 1.14
SMC4-209ENST00000468653 CDC42EP5Q6NZY7 148 aa22.2■■□□□ 1.14
SMC4-209ENST00000468653 NIM1KQ8IY84 436 aa22.2■■□□□ 1.14
SMC4-209ENST00000468653 ZNF287Q9HBT7 754 aa22.2■■□□□ 1.14
SMC4-209ENST00000468653 TSPY2A6NKD2 308 aa22.2■■□□□ 1.14
SMC4-209ENST00000468653 GOLGA8AA7E2F4 631 aa22.2■■□□□ 1.14
SMC4-209ENST00000468653 RXRAP19793 462 aa22.2■■□□□ 1.14
SMC4-209ENST00000468653 IARSP41252 1262 aaKnown RBP22.2■■□□□ 1.14
SMC4-209ENST00000468653 SEC23AQ15436 765 aa22.2■■□□□ 1.14
SMC4-209ENST00000468653 FAM47AQ5JRC9 791 aa22.2■■□□□ 1.14
SMC4-209ENST00000468653 CPLX2Q6PUV4 134 aaKnown RBP22.2■■□□□ 1.14
SMC4-209ENST00000468653 BCS1LQ9Y276 419 aa22.2■■□□□ 1.14
SMC4-209ENST00000468653 CDK5RAP2Q96SN8 1893 aa22.2■■□□□ 1.14
SMC4-209ENST00000468653 RAD17O75943 681 aa22.19■■□□□ 1.14
SMC4-209ENST00000468653 ENAHQ8N8S7 591 aaPredicted RBP22.19■■□□□ 1.14
SMC4-209ENST00000468653 MYL10Q9BUA6 226 aa22.19■■□□□ 1.14
SMC4-209ENST00000468653 TAOK3Q9H2K8 898 aa22.19■■□□□ 1.14
SMC4-209ENST00000468653 SERPINA10Q9UK55 444 aa22.19■■□□□ 1.14
SMC4-209ENST00000468653 ATP6V1DQ9Y5K8 247 aa22.19■■□□□ 1.14
SMC4-209ENST00000468653 H3BQV1 296 aa22.18■■□□□ 1.14
SMC4-209ENST00000468653 WDHD1O75717 1129 aaPredicted RBP22.18■■□□□ 1.14
SMC4-209ENST00000468653 IFIT1BQ5T764 474 aaKnown RBP22.18■■□□□ 1.14
SMC4-209ENST00000468653 IFFO2Q5TF58 517 aa22.18■■□□□ 1.14
SMC4-209ENST00000468653 CCDC144CPQ8IYA2 1237 aa22.18■■□□□ 1.14
SMC4-209ENST00000468653 ZNRF3Q9ULT6 936 aa22.18■■□□□ 1.14
SMC4-209ENST00000468653 MYO3BQ8WXR4 1341 aa22.18■■□□□ 1.14
SMC4-209ENST00000468653 PPFIA3O75145 1194 aa22.17■■□□□ 1.14
SMC4-209ENST00000468653 CDKL5O76039 1030 aa22.17■■□□□ 1.14
SMC4-209ENST00000468653 ADD1P35611 737 aaKnown RBP22.17■■□□□ 1.14
SMC4-209ENST00000468653 FOXD4L6Q3SYB3 417 aaPredicted RBP22.17■■□□□ 1.14
SMC4-209ENST00000468653 RSBN1LQ6PCB5 846 aaPredicted RBP22.17■■□□□ 1.14
SMC4-209ENST00000468653 FOXD4L3Q6VB84 417 aaPredicted RBP22.17■■□□□ 1.14
SMC4-209ENST00000468653 CDC37L1Q7L3B6 337 aa22.17■■□□□ 1.14
SMC4-209ENST00000468653 ZNF444Q8N0Y2 327 aaPredicted RBP22.17■■□□□ 1.14
SMC4-209ENST00000468653 TFAP4Q01664 338 aa22.17■■□□□ 1.14
SMC4-209ENST00000468653 TTC6Q86TZ1 520 aa22.17■■□□□ 1.14
SMC4-209ENST00000468653 ZNF654Q8IZM8 581 aa22.17■■□□□ 1.14
SMC4-209ENST00000468653 CHAMP1Q96JM3 812 aa22.17■■□□□ 1.14
SMC4-209ENST00000468653 DDX4Q9NQI0 724 aaKnown RBP22.17■■□□□ 1.14
SMC4-209ENST00000468653 ZNF646O15015 1829 aaPredicted RBP22.16■■□□□ 1.14
SMC4-209ENST00000468653 PSMD14O00487 310 aa22.16■■□□□ 1.14
SMC4-209ENST00000468653 VIL1P09327 827 aaKnown RBP22.16■■□□□ 1.14
SMC4-209ENST00000468653 CDC27P30260 824 aa22.16■■□□□ 1.14
SMC4-209ENST00000468653 RCAN1P53805 252 aa22.16■■□□□ 1.14
SMC4-209ENST00000468653 C16orf86Q6ZW13 317 aa22.16■■□□□ 1.14
SMC4-209ENST00000468653 SLC44A5Q8NCS7 719 aa22.16■■□□□ 1.14
SMC4-209ENST00000468653 ORC3Q9UBD5 711 aaPredicted RBP22.16■■□□□ 1.14
SMC4-209ENST00000468653 ADAMTSL1Q8N6G6 1762 aa22.16■■□□□ 1.14
SMC4-209ENST00000468653 CDK8P49336 464 aa22.15■■□□□ 1.14
SMC4-209ENST00000468653 CATIPQ7Z7H3 387 aa22.15■■□□□ 1.14
SMC4-209ENST00000468653 NUP133Q8WUM0 1156 aa22.15■■□□□ 1.14
SMC4-209ENST00000468653 PCDHAC2Q9Y5I4 1007 aa22.15■■□□□ 1.14
SMC4-209ENST00000468653 MYH1P12882 1939 aa22.15■■□□□ 1.14
SMC4-209ENST00000468653 BRCA1P38398 1863 aaKnown RBP22.15■■□□□ 1.14
SMC4-209ENST00000468653 NMT2O60551 498 aa22.15■■□□□ 1.14
SMC4-209ENST00000468653 TSPY3P0CV98 308 aa22.15■■□□□ 1.14
SMC4-209ENST00000468653 TSPY8P0CW00 308 aa22.15■■□□□ 1.14
SMC4-209ENST00000468653 FDPSP14324 419 aaKnown RBP22.15■■□□□ 1.14
SMC4-209ENST00000468653 RTN1Q16799 776 aa22.15■■□□□ 1.14
SMC4-209ENST00000468653 JDP2Q8WYK2 163 aa22.15■■□□□ 1.14
SMC4-209ENST00000468653 SPON1Q9HCB6 807 aa22.15■■□□□ 1.14
SMC4-209ENST00000468653 DDX60LQ5H9U9 1706 aaKnown RBP22.14■■□□□ 1.14
SMC4-209ENST00000468653 COL4A5P29400 1685 aa22.14■■□□□ 1.14
SMC4-209ENST00000468653 FOCADQ5VW36 1801 aa22.14■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms