RNA–Protein interactions for RNA: ENST00000468253.1

NPHP4-206, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 781 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-206ENST00000468253 PPATQ06203 517 aa24.09■■□□□ 1.45
NPHP4-206ENST00000468253 SREBF2Q12772 1141 aa24.09■■□□□ 1.45
NPHP4-206ENST00000468253 EHD4Q9H223 541 aa24.09■■□□□ 1.45
NPHP4-206ENST00000468253 DCP1AQ9NPI6 582 aaPredicted RBP24.09■■□□□ 1.45
NPHP4-206ENST00000468253 TESPA1A2RU30 521 aaPredicted RBP24.08■■□□□ 1.45
NPHP4-206ENST00000468253 GNAT2P19087 354 aa24.08■■□□□ 1.45
NPHP4-206ENST00000468253 GJA5P36382 358 aa24.08■■□□□ 1.45
NPHP4-206ENST00000468253 ZMYM1Q5SVZ6 1142 aa24.08■■□□□ 1.45
NPHP4-206ENST00000468253 ERICH6BQ5W0A0 696 aa24.08■■□□□ 1.45
NPHP4-206ENST00000468253 GIMAP6Q6P9H5 292 aa24.08■■□□□ 1.45
NPHP4-206ENST00000468253 CENPQQ7L2Z9 268 aaPredicted RBP24.08■■□□□ 1.45
NPHP4-206ENST00000468253 GINM1Q9NU53 330 aa24.08■■□□□ 1.45
NPHP4-206ENST00000468253 SAP30BPQ9UHR5 308 aaKnown RBP24.08■■□□□ 1.45
NPHP4-206ENST00000468253 PDE4AP27815 886 aa24.07■■□□□ 1.44
NPHP4-206ENST00000468253 PPIL2Q13356 520 aa24.07■■□□□ 1.44
NPHP4-206ENST00000468253 SCYL3Q8IZE3 742 aa24.07■■□□□ 1.44
NPHP4-206ENST00000468253 DDRGK1Q96HY6 314 aa24.07■■□□□ 1.44
NPHP4-206ENST00000468253 MCM9Q9NXL9 1143 aa24.07■■□□□ 1.44
NPHP4-206ENST00000468253 PRKAB2O43741 272 aa24.06■■□□□ 1.44
NPHP4-206ENST00000468253 POLR3DP05423 398 aaPredicted RBP24.06■■□□□ 1.44
NPHP4-206ENST00000468253 GTF2A2P52657 109 aa24.06■■□□□ 1.44
NPHP4-206ENST00000468253 SDR42E1Q8WUS8 393 aa24.06■■□□□ 1.44
NPHP4-206ENST00000468253 PICK1Q9NRD5 415 aa24.06■■□□□ 1.44
NPHP4-206ENST00000468253 SAGE1Q9NXZ1 904 aa24.06■■□□□ 1.44
NPHP4-206ENST00000468253 SERPINB13Q9UIV8 391 aa24.06■■□□□ 1.44
NPHP4-206ENST00000468253 SLC4A4Q9Y6R1 1079 aa24.06■■□□□ 1.44
NPHP4-206ENST00000468253 TRIM6-TRIM34B2RNG4 842 aa24.05■■□□□ 1.44
NPHP4-206ENST00000468253 CAP2P40123 477 aa24.05■■□□□ 1.44
NPHP4-206ENST00000468253 CRACR2BQ8N4Y2 399 aaPredicted RBP24.05■■□□□ 1.44
NPHP4-206ENST00000468253 MS4A4AQ96JQ5 239 aa24.05■■□□□ 1.44
NPHP4-206ENST00000468253 TRIM34Q9BYJ4 488 aa24.05■■□□□ 1.44
NPHP4-206ENST00000468253 CXCL11O14625 94 aa24.04■■□□□ 1.44
NPHP4-206ENST00000468253 GPAA1O43292 621 aa24.04■■□□□ 1.44
NPHP4-206ENST00000468253 SLURP2P0DP57 97 aa24.04■■□□□ 1.44
NPHP4-206ENST00000468253 CTCFP49711 727 aaPredicted RBP24.04■■□□□ 1.44
NPHP4-206ENST00000468253 PLCD1P51178 756 aa24.04■■□□□ 1.44
NPHP4-206ENST00000468253 MKRN3Q13064 507 aaKnown RBP24.04■■□□□ 1.44
NPHP4-206ENST00000468253 TATDN1Q6P1N9 297 aa24.04■■□□□ 1.44
NPHP4-206ENST00000468253 TBC1D2Q9BYX2 928 aa24.04■■□□□ 1.44
NPHP4-206ENST00000468253 HELLSQ9NRZ9 838 aa24.04■■□□□ 1.44
NPHP4-206ENST00000468253 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.04■■□□□ 1.44
NPHP4-206ENST00000468253 PATL2C9JE40 543 aaKnown RBP24.03■■□□□ 1.44
NPHP4-206ENST00000468253 ALDH1A1P00352 501 aa24.03■■□□□ 1.44
NPHP4-206ENST00000468253 PTPRAP18433 802 aa24.03■■□□□ 1.44
NPHP4-206ENST00000468253 GABPAQ06546 454 aa24.03■■□□□ 1.44
NPHP4-206ENST00000468253 OTUD7BQ6GQQ9 843 aa24.03■■□□□ 1.44
NPHP4-206ENST00000468253 CNKSR2Q8WXI2 1034 aa24.03■■□□□ 1.44
NPHP4-206ENST00000468253 OTUD5Q96G74 571 aa24.03■■□□□ 1.44
NPHP4-206ENST00000468253 RNF186Q9NXI6 227 aa24.03■■□□□ 1.44
NPHP4-206ENST00000468253 KCNH4Q9UQ05 1017 aa24.03■■□□□ 1.44
NPHP4-206ENST00000468253 THSD7BQ9C0I4 1608 aa24.02■■□□□ 1.44
NPHP4-206ENST00000468253 GSG1L2A8MUP6 293 aa24.02■■□□□ 1.44
NPHP4-206ENST00000468253 IRF6O14896 467 aa24.02■■□□□ 1.44
NPHP4-206ENST00000468253 FOXN1O15353 648 aa24.02■■□□□ 1.44
NPHP4-206ENST00000468253 SNAPC2Q13487 334 aa24.02■■□□□ 1.44
NPHP4-206ENST00000468253 SBK1Q52WX2 424 aa24.02■■□□□ 1.44
NPHP4-206ENST00000468253 C12orf60Q5U649 245 aa24.02■■□□□ 1.44
NPHP4-206ENST00000468253 AMOTL1Q8IY63 956 aa24.02■■□□□ 1.44
NPHP4-206ENST00000468253 RILPL2Q969X0 211 aa24.02■■□□□ 1.44
NPHP4-206ENST00000468253 DNAJC18Q9H819 358 aa24.02■■□□□ 1.44
NPHP4-206ENST00000468253 FAM196BA6NMK8 535 aa24.01■■□□□ 1.43
NPHP4-206ENST00000468253 M0R2C6 588 aa24.01■■□□□ 1.43
NPHP4-206ENST00000468253 CETPP11597 493 aa24.01■■□□□ 1.43
NPHP4-206ENST00000468253 IFNL1Q8IU54 200 aa24.01■■□□□ 1.43
NPHP4-206ENST00000468253 CFHR5Q9BXR6 569 aa24.01■■□□□ 1.43
NPHP4-206ENST00000468253 AFG3L2Q9Y4W6 797 aa24.01■■□□□ 1.43
NPHP4-206ENST00000468253 ZHX2Q9Y6X8 837 aa24.01■■□□□ 1.43
NPHP4-206ENST00000468253 AK9Q5TCS8 1911 aa24.01■■□□□ 1.43
NPHP4-206ENST00000468253 USP17L12C9JPN9 530 aa24■■□□□ 1.43
NPHP4-206ENST00000468253 USP17L21D6R901 530 aa24■■□□□ 1.43
NPHP4-206ENST00000468253 HIP1O00291 1037 aa24■■□□□ 1.43
NPHP4-206ENST00000468253 ASNSP08243 561 aa24■■□□□ 1.43
NPHP4-206ENST00000468253 SDSP20132 328 aa24■■□□□ 1.43
NPHP4-206ENST00000468253 RRP1BQ14684 758 aaKnown RBP24■■□□□ 1.43
NPHP4-206ENST00000468253 MCMDC2Q4G0Z9 681 aa24■■□□□ 1.43
NPHP4-206ENST00000468253 CCDC136Q96JN2 1154 aa24■■□□□ 1.43
NPHP4-206ENST00000468253 SEC62Q99442 399 aaKnown RBP24■■□□□ 1.43
NPHP4-206ENST00000468253 SWAP70Q9UH65 585 aa24■■□□□ 1.43
NPHP4-206ENST00000468253 TRPA1O75762 1119 aa23.99■■□□□ 1.43
NPHP4-206ENST00000468253 CTR9Q6PD62 1173 aa23.99■■□□□ 1.43
NPHP4-206ENST00000468253 NACAP1Q9BZK3 213 aa23.99■■□□□ 1.43
NPHP4-206ENST00000468253 PRDM10Q9NQV6 1147 aa23.99■■□□□ 1.43
NPHP4-206ENST00000468253 USP17L5A8MUK1 530 aa23.98■■□□□ 1.43
NPHP4-206ENST00000468253 TTC22Q5TAA0 569 aa23.98■■□□□ 1.43
NPHP4-206ENST00000468253 BRI3BPQ8WY22 251 aa23.98■■□□□ 1.43
NPHP4-206ENST00000468253 PTPN18Q99952 460 aa23.98■■□□□ 1.43
NPHP4-206ENST00000468253 ZCCHC17Q9NP64 241 aaKnown RBP23.98■■□□□ 1.43
NPHP4-206ENST00000468253 ARPP21Q9UBL0 812 aaPredicted RBP23.98■■□□□ 1.43
NPHP4-206ENST00000468253 CCL15-CCL14A0A0B4J2E2 113 aa23.97■■□□□ 1.43
NPHP4-206ENST00000468253 HSPA8P11142 646 aaKnown RBP23.97■■□□□ 1.43
NPHP4-206ENST00000468253 CCL15Q16663 113 aa23.97■■□□□ 1.43
NPHP4-206ENST00000468253 CERKLQ49MI3 558 aaPredicted RBP23.97■■□□□ 1.43
NPHP4-206ENST00000468253 NOM1Q5C9Z4 860 aaKnown RBP23.97■■□□□ 1.43
NPHP4-206ENST00000468253 IFNL3Q8IZI9 196 aa23.97■■□□□ 1.43
NPHP4-206ENST00000468253 WDR18Q9BV38 432 aa23.97■■□□□ 1.43
NPHP4-206ENST00000468253 APPP05067 770 aa23.96■■□□□ 1.43
NPHP4-206ENST00000468253 SHMT1P34896 483 aa23.96■■□□□ 1.43
NPHP4-206ENST00000468253 SLC4A8Q2Y0W8 1093 aa23.96■■□□□ 1.43
NPHP4-206ENST00000468253 IGF2BP3O00425 579 aaKnown RBP eCLIP23.95■■□□□ 1.42
NPHP4-206ENST00000468253 CYP2D6P10635 497 aa23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms