RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 NID2Q14112 1375 aa10.33□□□□□ -0.76
SYNE1-217ENST00000466159 BAZ2AQ9UIF9 1905 aaKnown RBP10.33□□□□□ -0.76
SYNE1-217ENST00000466159 MYH2Q9UKX2 1941 aa10.33□□□□□ -0.76
SYNE1-217ENST00000466159 KLRK1P26718 216 aa10.33□□□□□ -0.76
SYNE1-217ENST00000466159 GTF2E1P29083 439 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-217ENST00000466159 TOB1P50616 345 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-217ENST00000466159 SPECC1Q5M775 1068 aa10.33□□□□□ -0.76
SYNE1-217ENST00000466159 RESP18Q5W5W9 173 aa10.33□□□□□ -0.76
SYNE1-217ENST00000466159 DIS3L2Q8IYB7 885 aaKnown RBP10.33□□□□□ -0.76
SYNE1-217ENST00000466159 TRIM22Q8IYM9 498 aa10.33□□□□□ -0.76
SYNE1-217ENST00000466159 CRACR2BQ8N4Y2 399 aaPredicted RBP10.33□□□□□ -0.76
SYNE1-217ENST00000466159 FANCBQ8NB91 859 aa10.33□□□□□ -0.76
SYNE1-217ENST00000466159 ZNF384Q8TF68 577 aa10.33□□□□□ -0.76
SYNE1-217ENST00000466159 WASF1Q92558 559 aa10.33□□□□□ -0.76
SYNE1-217ENST00000466159 TIGD1Q96MW7 591 aa10.33□□□□□ -0.76
SYNE1-217ENST00000466159 BPIFA3Q9BQP9 254 aa10.33□□□□□ -0.76
SYNE1-217ENST00000466159 UBAC1Q9BSL1 405 aa10.33□□□□□ -0.76
SYNE1-217ENST00000466159 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.33□□□□□ -0.76
SYNE1-217ENST00000466159 LTBP4Q8N2S1 1624 aa10.32□□□□□ -0.76
SYNE1-217ENST00000466159 GTF2F1P35269 517 aaKnown RBP eCLIP10.32□□□□□ -0.76
SYNE1-217ENST00000466159 PNOCQ13519 176 aa10.32□□□□□ -0.76
SYNE1-217ENST00000466159 CACNA1SQ13698 1873 aa10.32□□□□□ -0.76
SYNE1-217ENST00000466159 NCAPHQ15003 741 aa10.32□□□□□ -0.76
SYNE1-217ENST00000466159 CAVIN4Q5BKX8 364 aa10.32□□□□□ -0.76
SYNE1-217ENST00000466159 TMTC2Q8N394 836 aa10.32□□□□□ -0.76
SYNE1-217ENST00000466159 CCDC24Q8N4L8 307 aa10.32□□□□□ -0.76
SYNE1-217ENST00000466159 BCL2L12Q9HB09 334 aa10.32□□□□□ -0.76
SYNE1-217ENST00000466159 A0A1B0GUL6 1792 aa10.32□□□□□ -0.76
SYNE1-217ENST00000466159 CASZ1Q86V15 1759 aa10.32□□□□□ -0.76
SYNE1-217ENST00000466159 TNKSO95271 1327 aa10.32□□□□□ -0.76
SYNE1-217ENST00000466159 RIOK3O14730 519 aaKnown RBP10.32□□□□□ -0.76
SYNE1-217ENST00000466159 PIP4K2BP78356 416 aa10.32□□□□□ -0.76
SYNE1-217ENST00000466159 NR5A1Q13285 461 aa10.32□□□□□ -0.76
SYNE1-217ENST00000466159 SAFBQ15424 915 aaKnown RBP eCLIP10.32□□□□□ -0.76
SYNE1-217ENST00000466159 SEC23AQ15436 765 aa10.32□□□□□ -0.76
SYNE1-217ENST00000466159 LONRF3Q496Y0 759 aa10.32□□□□□ -0.76
SYNE1-217ENST00000466159 FAM237AA0A1B0GTK4 181 aa10.31□□□□□ -0.76
SYNE1-217ENST00000466159 CUTAO60888 179 aa10.31□□□□□ -0.76
SYNE1-217ENST00000466159 PRDM1O75626 825 aa10.31□□□□□ -0.76
SYNE1-217ENST00000466159 DEXIO95424 95 aa10.31□□□□□ -0.76
SYNE1-217ENST00000466159 SKILP12757 684 aa10.31□□□□□ -0.76
SYNE1-217ENST00000466159 GRIN1Q05586 938 aa10.31□□□□□ -0.76
SYNE1-217ENST00000466159 CHAF1AQ13111 956 aaPredicted RBP10.31□□□□□ -0.76
SYNE1-217ENST00000466159 OXER1Q8TDS5 423 aa10.31□□□□□ -0.76
SYNE1-217ENST00000466159 ESR2Q92731 530 aa10.31□□□□□ -0.76
SYNE1-217ENST00000466159 XPO4Q9C0E2 1151 aaKnown RBP10.31□□□□□ -0.76
SYNE1-217ENST00000466159 IFNKQ9P0W0 207 aa10.31□□□□□ -0.76
SYNE1-217ENST00000466159 SRP68Q9UHB9 627 aaKnown RBP10.31□□□□□ -0.76
SYNE1-217ENST00000466159 TUBE1Q9UJT0 475 aa10.31□□□□□ -0.76
SYNE1-217ENST00000466159 ANAPC4Q9UJX5 808 aa10.31□□□□□ -0.76
SYNE1-217ENST00000466159 CCDC196A0A1B0GTZ2 297 aa10.31□□□□□ -0.76
SYNE1-217ENST00000466159 USP27XA6NNY8 438 aa10.31□□□□□ -0.76
SYNE1-217ENST00000466159 SMC2O95347 1197 aa10.31□□□□□ -0.76
SYNE1-217ENST00000466159 EVX2Q03828 476 aa10.31□□□□□ -0.76
SYNE1-217ENST00000466159 METTL16Q86W50 562 aaKnown RBP10.31□□□□□ -0.76
SYNE1-217ENST00000466159 FOXP4Q8IVH2 680 aaPredicted RBP10.31□□□□□ -0.76
SYNE1-217ENST00000466159 ENAHQ8N8S7 591 aaPredicted RBP10.31□□□□□ -0.76
SYNE1-217ENST00000466159 KRI1Q8N9T8 703 aaKnown RBP10.31□□□□□ -0.76
SYNE1-217ENST00000466159 MTA3Q9BTC8 594 aa10.31□□□□□ -0.76
SYNE1-217ENST00000466159 KCNH3Q9ULD8 1083 aa10.31□□□□□ -0.76
SYNE1-217ENST00000466159 hCG_1642624A0A1W2PR95 340 aa10.3□□□□□ -0.76
SYNE1-217ENST00000466159 FOXN1O15353 648 aa10.3□□□□□ -0.76
SYNE1-217ENST00000466159 TNNT1P13805 278 aa10.3□□□□□ -0.76
SYNE1-217ENST00000466159 ATP2B1P20020 1258 aa10.3□□□□□ -0.76
SYNE1-217ENST00000466159 LMOD1P29536 600 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-217ENST00000466159 CCZ1BP86790 482 aa10.3□□□□□ -0.76
SYNE1-217ENST00000466159 CCZ1P86791 482 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-217ENST00000466159 TPD52L1Q16890 204 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-217ENST00000466159 SHISA4Q96DD7 197 aa10.3□□□□□ -0.76
SYNE1-217ENST00000466159 FOXP1Q9H334 677 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-217ENST00000466159 TFCP2L1Q9NZI6 479 aa10.3□□□□□ -0.76
SYNE1-217ENST00000466159 PCDHB6Q9Y5E3 794 aa10.3□□□□□ -0.76
SYNE1-217ENST00000466159 MYH6P13533 1939 aa10.3□□□□□ -0.76
SYNE1-217ENST00000466159 NEMFO60524 1076 aa10.3□□□□□ -0.76
SYNE1-217ENST00000466159 RPS8P62241 208 aaKnown RBP10.3□□□□□ -0.76
SYNE1-217ENST00000466159 SLC10A5Q5PT55 438 aa10.3□□□□□ -0.76
SYNE1-217ENST00000466159 KRBA2Q6ZNG9 492 aa10.3□□□□□ -0.76
SYNE1-217ENST00000466159 FBXO33Q7Z6M2 555 aa10.3□□□□□ -0.76
SYNE1-217ENST00000466159 ZNF710Q8N1W2 664 aa10.3□□□□□ -0.76
SYNE1-217ENST00000466159 CNNM3Q8NE01 707 aa10.3□□□□□ -0.76
SYNE1-217ENST00000466159 ZSCAN10Q96SZ4 725 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-217ENST00000466159 HSD3B7Q9H2F3 369 aa10.3□□□□□ -0.76
SYNE1-217ENST00000466159 SMTNL1A8MU46 457 aa10.29□□□□□ -0.76
SYNE1-217ENST00000466159 USP17L12C9JPN9 530 aa10.29□□□□□ -0.76
SYNE1-217ENST00000466159 USP17L21D6R901 530 aa10.29□□□□□ -0.76
SYNE1-217ENST00000466159 ATP1A3P13637 1013 aa10.29□□□□□ -0.76
SYNE1-217ENST00000466159 RCAN1P53805 252 aa10.29□□□□□ -0.76
SYNE1-217ENST00000466159 CTR9Q6PD62 1173 aa10.29□□□□□ -0.76
SYNE1-217ENST00000466159 BRIP1Q9BX63 1249 aa10.29□□□□□ -0.76
SYNE1-217ENST00000466159 CABP5Q9NP86 173 aa10.29□□□□□ -0.76
SYNE1-217ENST00000466159 FBXO2Q9UK22 296 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-217ENST00000466159 MECOMQ03112 1051 aa10.29□□□□□ -0.76
SYNE1-217ENST00000466159 RILPL1Q5EBL4 403 aa10.29□□□□□ -0.76
SYNE1-217ENST00000466159 TMC6Q7Z403 805 aa10.29□□□□□ -0.76
SYNE1-217ENST00000466159 NSUN4Q96CB9 384 aaKnown RBP10.29□□□□□ -0.76
SYNE1-217ENST00000466159 SETDB2Q96T68 719 aa10.29□□□□□ -0.76
SYNE1-217ENST00000466159 ARID3AQ99856 593 aa10.29□□□□□ -0.76
SYNE1-217ENST00000466159 VPS54Q9P1Q0 977 aa10.29□□□□□ -0.76
SYNE1-217ENST00000466159 PCDHA5Q9Y5H7 936 aa10.29□□□□□ -0.76
SYNE1-217ENST00000466159 FAM205CA6NFA0 338 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms