RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 MAGEB6P1A0A0J9YX57 407 aa15.78■□□□□ 0.12
COL28A1-206ENST00000465339 PHF20L1A8MW92 1017 aa15.78■□□□□ 0.12
COL28A1-206ENST00000465339 ALDH1A1P00352 501 aa15.78■□□□□ 0.12
COL28A1-206ENST00000465339 INPP5BP32019 993 aa15.78■□□□□ 0.12
COL28A1-206ENST00000465339 GJA5P36382 358 aa15.78■□□□□ 0.12
COL28A1-206ENST00000465339 GTF2A2P52657 109 aa15.78■□□□□ 0.12
COL28A1-206ENST00000465339 PPATQ06203 517 aa15.78■□□□□ 0.12
COL28A1-206ENST00000465339 NOL9Q5SY16 702 aaKnown RBP15.78■□□□□ 0.12
COL28A1-206ENST00000465339 OTUD7BQ6GQQ9 843 aa15.78■□□□□ 0.12
COL28A1-206ENST00000465339 ZSCAN25Q6NSZ9 544 aa15.78■□□□□ 0.12
COL28A1-206ENST00000465339 PI4KBQ9UBF8 816 aa15.78■□□□□ 0.12
COL28A1-206ENST00000465339 TSKSQ9UJT2 592 aa15.78■□□□□ 0.12
COL28A1-206ENST00000465339 MYH1P12882 1939 aa15.78■□□□□ 0.12
COL28A1-206ENST00000465339 TCRBV5S4A2TA0A5A2 114 aa15.77■□□□□ 0.12
COL28A1-206ENST00000465339 TESPA1A2RU30 521 aaPredicted RBP15.77■□□□□ 0.12
COL28A1-206ENST00000465339 ERC2O15083 957 aa15.77■□□□□ 0.12
COL28A1-206ENST00000465339 CTNND1O60716 968 aaKnown RBP15.77■□□□□ 0.12
COL28A1-206ENST00000465339 USP5P45974 858 aa15.77■□□□□ 0.12
COL28A1-206ENST00000465339 PPIL2Q13356 520 aa15.77■□□□□ 0.12
COL28A1-206ENST00000465339 FOXP4Q8IVH2 680 aaPredicted RBP15.77■□□□□ 0.12
COL28A1-206ENST00000465339 MAPKAPK5Q8IW41 473 aa15.77■□□□□ 0.12
COL28A1-206ENST00000465339 OTUD5Q96G74 571 aa15.77■□□□□ 0.12
COL28A1-206ENST00000465339 HERC5Q9UII4 1024 aaKnown RBP15.77■□□□□ 0.12
COL28A1-206ENST00000465339 FLT1P17948 1338 aa15.76■□□□□ 0.11
COL28A1-206ENST00000465339 ADD2P35612 726 aa15.76■□□□□ 0.11
COL28A1-206ENST00000465339 UBE3CQ15386 1083 aa15.76■□□□□ 0.11
COL28A1-206ENST00000465339 IFNL1Q8IU54 200 aa15.76■□□□□ 0.11
COL28A1-206ENST00000465339 SMC5Q8IY18 1101 aa15.76■□□□□ 0.11
COL28A1-206ENST00000465339 MS4A4AQ96JQ5 239 aa15.76■□□□□ 0.11
COL28A1-206ENST00000465339 RIOK1Q9BRS2 568 aaKnown RBP15.76■□□□□ 0.11
COL28A1-206ENST00000465339 CFHR5Q9BXR6 569 aa15.76■□□□□ 0.11
COL28A1-206ENST00000465339 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.76■□□□□ 0.11
COL28A1-206ENST00000465339 CASP8AP2Q9UKL3 1982 aa15.76■□□□□ 0.11
COL28A1-206ENST00000465339 GLRX3O76003 335 aaKnown RBP15.75■□□□□ 0.11
COL28A1-206ENST00000465339 CETPP11597 493 aa15.75■□□□□ 0.11
COL28A1-206ENST00000465339 MX1P20591 662 aa15.75■□□□□ 0.11
COL28A1-206ENST00000465339 SCYL3Q8IZE3 742 aa15.75■□□□□ 0.11
COL28A1-206ENST00000465339 CRNKL1Q9BZJ0 848 aaKnown RBP15.75■□□□□ 0.11
COL28A1-206ENST00000465339 PICK1Q9NRD5 415 aa15.75■□□□□ 0.11
COL28A1-206ENST00000465339 PALD1Q9ULE6 856 aa15.75■□□□□ 0.11
COL28A1-206ENST00000465339 IRF6O14896 467 aa15.74■□□□□ 0.11
COL28A1-206ENST00000465339 IGHDP01880 384 aa15.74■□□□□ 0.11
COL28A1-206ENST00000465339 HLA-DOAP06340 250 aa15.74■□□□□ 0.11
COL28A1-206ENST00000465339 SNAPC2Q13487 334 aa15.74■□□□□ 0.11
COL28A1-206ENST00000465339 METTL16Q86W50 562 aaKnown RBP15.74■□□□□ 0.11
COL28A1-206ENST00000465339 KBTBD3Q8NAB2 608 aa15.74■□□□□ 0.11
COL28A1-206ENST00000465339 DOCK1Q14185 1865 aa15.74■□□□□ 0.11
COL28A1-206ENST00000465339 CCL15-CCL14A0A0B4J2E2 113 aa15.73■□□□□ 0.11
COL28A1-206ENST00000465339 IGF2BP3O00425 579 aaKnown RBP eCLIP15.73■□□□□ 0.11
COL28A1-206ENST00000465339 TBC1D8O95759 1140 aa15.73■□□□□ 0.11
COL28A1-206ENST00000465339 CCL15Q16663 113 aa15.73■□□□□ 0.11
COL28A1-206ENST00000465339 LRRFIP1Q32MZ4 808 aaKnown RBP15.73■□□□□ 0.11
COL28A1-206ENST00000465339 NOM1Q5C9Z4 860 aaKnown RBP15.73■□□□□ 0.11
COL28A1-206ENST00000465339 TSHZ3Q63HK5 1081 aa15.73■□□□□ 0.11
COL28A1-206ENST00000465339 TTC6Q86TZ1 520 aa15.73■□□□□ 0.11
COL28A1-206ENST00000465339 CRACR2BQ8N4Y2 399 aaPredicted RBP15.73■□□□□ 0.11
COL28A1-206ENST00000465339 PI4K2BQ8TCG2 481 aa15.73■□□□□ 0.11
COL28A1-206ENST00000465339 OTUD7AQ8TE49 926 aaPredicted RBP15.73■□□□□ 0.11
COL28A1-206ENST00000465339 PTPN18Q99952 460 aa15.73■□□□□ 0.11
COL28A1-206ENST00000465339 TRIM34Q9BYJ4 488 aa15.73■□□□□ 0.11
COL28A1-206ENST00000465339 STAP2Q9UGK3 403 aa15.73■□□□□ 0.11
COL28A1-206ENST00000465339 SAP30BPQ9UHR5 308 aaKnown RBP15.73■□□□□ 0.11
COL28A1-206ENST00000465339 SIPA1L1O43166 1804 aa15.73■□□□□ 0.11
COL28A1-206ENST00000465339 SALL3Q9BXA9 1300 aa15.72■□□□□ 0.11
COL28A1-206ENST00000465339 CXCL11O14625 94 aa15.72■□□□□ 0.11
COL28A1-206ENST00000465339 ZFYP08048 801 aaPredicted RBP15.72■□□□□ 0.11
COL28A1-206ENST00000465339 SLURP2P0DP57 97 aa15.72■□□□□ 0.11
COL28A1-206ENST00000465339 PTPRAP18433 802 aa15.72■□□□□ 0.11
COL28A1-206ENST00000465339 CAP2P40123 477 aa15.72■□□□□ 0.11
COL28A1-206ENST00000465339 TNS4Q8IZW8 715 aa15.72■□□□□ 0.11
COL28A1-206ENST00000465339 BRI3BPQ8WY22 251 aa15.72■□□□□ 0.11
COL28A1-206ENST00000465339 KCNH4Q9UQ05 1017 aa15.72■□□□□ 0.11
COL28A1-206ENST00000465339 ZHX2Q9Y6X8 837 aa15.72■□□□□ 0.11
COL28A1-206ENST00000465339 ATAD5Q96QE3 1844 aa15.71■□□□□ 0.11
COL28A1-206ENST00000465339 FAM196BA6NMK8 535 aa15.71■□□□□ 0.11
COL28A1-206ENST00000465339 RNF113AO15541 343 aaKnown RBP15.71■□□□□ 0.11
COL28A1-206ENST00000465339 MBD4O95243 580 aa15.71■□□□□ 0.11
COL28A1-206ENST00000465339 RASEFQ8IZ41 740 aa15.71■□□□□ 0.11
COL28A1-206ENST00000465339 LCORLQ8N3X6 602 aa15.71■□□□□ 0.11
COL28A1-206ENST00000465339 SP7Q8TDD2 431 aaPredicted RBP15.71■□□□□ 0.11
COL28A1-206ENST00000465339 TBC1D2Q9BYX2 928 aa15.71■□□□□ 0.11
COL28A1-206ENST00000465339 EHD4Q9H223 541 aa15.71■□□□□ 0.11
COL28A1-206ENST00000465339 ARMT1Q9H993 441 aa15.71■□□□□ 0.11
COL28A1-206ENST00000465339 ZCCHC17Q9NP64 241 aaKnown RBP15.71■□□□□ 0.11
COL28A1-206ENST00000465339 ATP8A2Q9NTI2 1148 aa15.71■□□□□ 0.11
COL28A1-206ENST00000465339 GINM1Q9NU53 330 aa15.71■□□□□ 0.11
COL28A1-206ENST00000465339 PHIPQ8WWQ0 1821 aa15.71■□□□□ 0.1
COL28A1-206ENST00000465339 NAV1Q8NEY1 1877 aa15.7■□□□□ 0.1
COL28A1-206ENST00000465339 GPR25O00155 361 aa15.7■□□□□ 0.1
COL28A1-206ENST00000465339 NUBP1P53384 320 aa15.7■□□□□ 0.1
COL28A1-206ENST00000465339 PDE1AP54750 535 aa15.7■□□□□ 0.1
COL28A1-206ENST00000465339 IRX6P78412 446 aaPredicted RBP15.7■□□□□ 0.1
COL28A1-206ENST00000465339 NUCB1Q02818 461 aa15.7■□□□□ 0.1
COL28A1-206ENST00000465339 SLFNL1Q499Z3 407 aa15.7■□□□□ 0.1
COL28A1-206ENST00000465339 B4GALNT3Q6L9W6 998 aa15.7■□□□□ 0.1
COL28A1-206ENST00000465339 CHD1LQ86WJ1 897 aa15.7■□□□□ 0.1
COL28A1-206ENST00000465339 SERPINB13Q9UIV8 391 aa15.7■□□□□ 0.1
COL28A1-206ENST00000465339 AFG3L2Q9Y4W6 797 aa15.7■□□□□ 0.1
COL28A1-206ENST00000465339 POLR3DP05423 398 aaPredicted RBP15.69■□□□□ 0.1
COL28A1-206ENST00000465339 ASNSP08243 561 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms