RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 ZBTB37Q5TC79 503 aa6.59□□□□□ -1.35
VPS41-210ENST00000462429 CDC37L1Q7L3B6 337 aa6.59□□□□□ -1.35
VPS41-210ENST00000462429 TMEM151AQ8N4L1 468 aa6.59□□□□□ -1.35
VPS41-210ENST00000462429 KCT2Q8NC54 265 aa6.59□□□□□ -1.35
VPS41-210ENST00000462429 ZNF507Q8TCN5 953 aa6.59□□□□□ -1.35
VPS41-210ENST00000462429 UTP4Q969X6 686 aaKnown RBP6.59□□□□□ -1.35
VPS41-210ENST00000462429 GMLQ99445 158 aa6.59□□□□□ -1.35
VPS41-210ENST00000462429 STRIP2Q9ULQ0 834 aa6.59□□□□□ -1.35
VPS41-210ENST00000462429 POLR3KQ9Y2Y1 108 aaPredicted RBP6.59□□□□□ -1.35
VPS41-210ENST00000462429 PRR36Q9H6K5 1346 aa6.58□□□□□ -1.36
VPS41-210ENST00000462429 GRIN3BO60391 1043 aa6.58□□□□□ -1.36
VPS41-210ENST00000462429 RNGTTO60942 597 aaKnown RBP6.58□□□□□ -1.36
VPS41-210ENST00000462429 PGRP06401 933 aa6.58□□□□□ -1.36
VPS41-210ENST00000462429 IMPDH2P12268 514 aa6.58□□□□□ -1.36
VPS41-210ENST00000462429 GRK4P32298 578 aa6.58□□□□□ -1.36
VPS41-210ENST00000462429 GK5Q6ZS86 529 aa6.58□□□□□ -1.36
VPS41-210ENST00000462429 SREK1Q8WXA9 508 aaKnown RBP6.58□□□□□ -1.36
VPS41-210ENST00000462429 MYRFLQ96LU7 910 aa6.58□□□□□ -1.36
VPS41-210ENST00000462429 FERD3LQ96RJ6 166 aa6.58□□□□□ -1.36
VPS41-210ENST00000462429 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.58□□□□□ -1.36
VPS41-210ENST00000462429 TANGO6Q9C0B7 1094 aa6.58□□□□□ -1.36
VPS41-210ENST00000462429 EHMT1Q9H9B1 1298 aa6.58□□□□□ -1.36
VPS41-210ENST00000462429 SSU72Q9NP77 194 aaKnown RBP6.58□□□□□ -1.36
VPS41-210ENST00000462429 FAM105AQ9NUU6 356 aa6.58□□□□□ -1.36
VPS41-210ENST00000462429 PRKAG2Q9UGJ0 569 aa6.58□□□□□ -1.36
VPS41-210ENST00000462429 ADAM30Q9UKF2 790 aa6.58□□□□□ -1.36
VPS41-210ENST00000462429 PCDHB14Q9Y5E9 798 aa6.58□□□□□ -1.36
VPS41-210ENST00000462429 DHX15O43143 795 aaKnown RBP6.57□□□□□ -1.36
VPS41-210ENST00000462429 ATE1O95260 518 aa6.57□□□□□ -1.36
VPS41-210ENST00000462429 HTR3BO95264 441 aa6.57□□□□□ -1.36
VPS41-210ENST00000462429 SSBP05455 408 aaKnown RBP eCLIP6.57□□□□□ -1.36
VPS41-210ENST00000462429 BMP3P12645 472 aa6.57□□□□□ -1.36
VPS41-210ENST00000462429 HCLS1P14317 486 aaPredicted RBP6.57□□□□□ -1.36
VPS41-210ENST00000462429 PLCG1P19174 1290 aa6.57□□□□□ -1.36
VPS41-210ENST00000462429 RAB6AP20340 208 aa6.57□□□□□ -1.36
VPS41-210ENST00000462429 GSK3AP49840 483 aa6.57□□□□□ -1.36
VPS41-210ENST00000462429 HID1Q8IV36 788 aa6.57□□□□□ -1.36
VPS41-210ENST00000462429 SMYD4Q8IYR2 804 aaPredicted RBP6.57□□□□□ -1.36
VPS41-210ENST00000462429 CPLX3Q8WVH0 158 aa6.57□□□□□ -1.36
VPS41-210ENST00000462429 ACSS3Q9H6R3 686 aa6.57□□□□□ -1.36
VPS41-210ENST00000462429 PCOLCE2Q9UKZ9 415 aa6.57□□□□□ -1.36
VPS41-210ENST00000462429 CORINQ9Y5Q5 1042 aa6.57□□□□□ -1.36
VPS41-210ENST00000462429 NEFMP07197 916 aa6.56□□□□□ -1.36
VPS41-210ENST00000462429 FGRP09769 529 aa6.56□□□□□ -1.36
VPS41-210ENST00000462429 MAP4P27816 1152 aaKnown RBP6.56□□□□□ -1.36
VPS41-210ENST00000462429 RXRBP28702 533 aa6.56□□□□□ -1.36
VPS41-210ENST00000462429 NTF4P34130 210 aa6.56□□□□□ -1.36
VPS41-210ENST00000462429 CLCQ05315 142 aa6.56□□□□□ -1.36
VPS41-210ENST00000462429 MAP7Q14244 749 aa6.56□□□□□ -1.36
VPS41-210ENST00000462429 LRRFIP1Q32MZ4 808 aaKnown RBP6.56□□□□□ -1.36
VPS41-210ENST00000462429 PLA2G4EQ3MJ16 856 aa6.56□□□□□ -1.36
VPS41-210ENST00000462429 TMEM201Q5SNT2 666 aa6.56□□□□□ -1.36
VPS41-210ENST00000462429 FBXW10Q5XX13 1052 aa6.56□□□□□ -1.36
VPS41-210ENST00000462429 CDPF1Q6NVV7 123 aa6.56□□□□□ -1.36
VPS41-210ENST00000462429 FAM20CQ8IXL6 584 aa6.56□□□□□ -1.36
VPS41-210ENST00000462429 ARMC10Q8N2F6 343 aa6.56□□□□□ -1.36
VPS41-210ENST00000462429 ISL2Q96A47 359 aa6.56□□□□□ -1.36
VPS41-210ENST00000462429 CRBNQ96SW2 442 aa6.56□□□□□ -1.36
VPS41-210ENST00000462429 SSBP4Q9BWG4 385 aaPredicted RBP6.56□□□□□ -1.36
VPS41-210ENST00000462429 SRRTQ9BXP5 876 aaKnown RBP6.56□□□□□ -1.36
VPS41-210ENST00000462429 ATP2B1P20020 1258 aa6.55□□□□□ -1.36
VPS41-210ENST00000462429 SGO2Q562F6 1265 aa6.55□□□□□ -1.36
VPS41-210ENST00000462429 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.55□□□□□ -1.36
VPS41-210ENST00000462429 FBLIM1Q8WUP2 373 aa6.55□□□□□ -1.36
VPS41-210ENST00000462429 EZH1Q92800 747 aaPredicted RBP6.55□□□□□ -1.36
VPS41-210ENST00000462429 TP53INP1Q96A56 240 aa6.55□□□□□ -1.36
VPS41-210ENST00000462429 KCNF1Q9H3M0 494 aa6.55□□□□□ -1.36
VPS41-210ENST00000462429 REV1Q9UBZ9 1251 aa6.55□□□□□ -1.36
VPS41-210ENST00000462429 ZNRF3Q9ULT6 936 aa6.55□□□□□ -1.36
VPS41-210ENST00000462429 PPT2Q9UMR5 302 aa6.55□□□□□ -1.36
VPS41-210ENST00000462429 DAGLAQ9Y4D2 1042 aa6.55□□□□□ -1.36
VPS41-210ENST00000462429 FAM95CA0A1B0GW59 222 aa6.54□□□□□ -1.36
VPS41-210ENST00000462429 NFICP08651 508 aa6.54□□□□□ -1.36
VPS41-210ENST00000462429 EIF6P56537 245 aaKnown RBP6.54□□□□□ -1.36
VPS41-210ENST00000462429 PAOXQ6QHF9 649 aa6.54□□□□□ -1.36
VPS41-210ENST00000462429 CCDC81Q6ZN84 652 aa6.54□□□□□ -1.36
VPS41-210ENST00000462429 MCF2L2Q86YR7 1114 aa6.54□□□□□ -1.36
VPS41-210ENST00000462429 DRC1Q96MC2 740 aa6.54□□□□□ -1.36
VPS41-210ENST00000462429 SEMA6CQ9H3T2 930 aa6.54□□□□□ -1.36
VPS41-210ENST00000462429 CAP2P40123 477 aa6.53□□□□□ -1.36
VPS41-210ENST00000462429 YARSP54577 528 aaKnown RBP6.53□□□□□ -1.36
VPS41-210ENST00000462429 NFKBIBQ15653 356 aa6.53□□□□□ -1.36
VPS41-210ENST00000462429 SLC6A19Q695T7 634 aa6.53□□□□□ -1.36
VPS41-210ENST00000462429 BEND4Q6ZU67 534 aa6.53□□□□□ -1.36
VPS41-210ENST00000462429 CLEC10AQ8IUN9 316 aa6.53□□□□□ -1.36
VPS41-210ENST00000462429 MCATQ8IVS2 390 aaKnown RBP6.53□□□□□ -1.36
VPS41-210ENST00000462429 MRPL41Q8IXM3 137 aaKnown RBP6.53□□□□□ -1.36
VPS41-210ENST00000462429 OR6P1Q8NGX9 317 aa6.53□□□□□ -1.36
VPS41-210ENST00000462429 ACSF2Q96CM8 615 aaPredicted RBP6.53□□□□□ -1.36
VPS41-210ENST00000462429 TMEM87BQ96K49 555 aa6.53□□□□□ -1.36
VPS41-210ENST00000462429 FBRSQ9HAH7 460 aa6.53□□□□□ -1.36
VPS41-210ENST00000462429 GMIPQ9P107 970 aa6.53□□□□□ -1.36
VPS41-210ENST00000462429 TJP2Q9UDY2 1190 aa6.53□□□□□ -1.36
VPS41-210ENST00000462429 KLHL3Q9UH77 587 aa6.53□□□□□ -1.36
VPS41-210ENST00000462429 MEIS3P2A8K0S8 358 aa6.52□□□□□ -1.37
VPS41-210ENST00000462429 LRIG2O94898 1065 aa6.52□□□□□ -1.37
VPS41-210ENST00000462429 SLBPQ14493 270 aaKnown RBP eCLIP6.52□□□□□ -1.37
VPS41-210ENST00000462429 RBBP8NLQ8NC74 664 aaPredicted RBP6.52□□□□□ -1.37
VPS41-210ENST00000462429 FAM13CQ8NE31 585 aa6.52□□□□□ -1.37
VPS41-210ENST00000462429 TMEM40Q8WWA1 233 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms