RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 EP400NLQ6ZTU2 488 aa13.32□□□□□ -0.28
CPSF3-202ENST00000460593 PPM1EQ8WY54 764 aa13.32□□□□□ -0.28
CPSF3-202ENST00000460593 IP6K1Q92551 441 aa13.32□□□□□ -0.28
CPSF3-202ENST00000460593 BTBD18B2RXH4 712 aa13.32□□□□□ -0.28
CPSF3-202ENST00000460593 CD44P16070 742 aaKnown RBP13.32□□□□□ -0.28
CPSF3-202ENST00000460593 ADORA1P30542 326 aa13.32□□□□□ -0.28
CPSF3-202ENST00000460593 GUCY1A2P33402 732 aa13.32□□□□□ -0.28
CPSF3-202ENST00000460593 SCARF1Q14162 830 aa13.32□□□□□ -0.28
CPSF3-202ENST00000460593 IMMTQ16891 758 aaKnown RBP13.32□□□□□ -0.28
CPSF3-202ENST00000460593 CYB5R4Q7L1T6 521 aa13.32□□□□□ -0.28
CPSF3-202ENST00000460593 ATG9AQ7Z3C6 839 aa13.32□□□□□ -0.28
CPSF3-202ENST00000460593 AFAP1L1Q8TED9 768 aa13.32□□□□□ -0.28
CPSF3-202ENST00000460593 METAP2P50579 478 aaKnown RBP eCLIP13.32□□□□□ -0.28
CPSF3-202ENST00000460593 ERVK-24P63145 666 aa13.32□□□□□ -0.28
CPSF3-202ENST00000460593 CTR9Q6PD62 1173 aa13.32□□□□□ -0.28
CPSF3-202ENST00000460593 SECISBP2LQ93073 1101 aaKnown RBP13.32□□□□□ -0.28
CPSF3-202ENST00000460593 GUCA1BQ9UMX6 200 aa13.32□□□□□ -0.28
CPSF3-202ENST00000460593 MYBL2P10244 700 aa13.31□□□□□ -0.28
CPSF3-202ENST00000460593 CEBPAP49715 358 aaPredicted RBP13.31□□□□□ -0.28
CPSF3-202ENST00000460593 DEF6Q9H4E7 631 aa13.31□□□□□ -0.28
CPSF3-202ENST00000460593 GEMIN8Q9NWZ8 242 aaKnown RBP13.31□□□□□ -0.28
CPSF3-202ENST00000460593 TMEM2Q9UHN6 1383 aa13.31□□□□□ -0.28
CPSF3-202ENST00000460593 RANBP6O60518 1105 aaKnown RBP13.31□□□□□ -0.28
CPSF3-202ENST00000460593 JMYQ8N9B5 988 aa13.31□□□□□ -0.28
CPSF3-202ENST00000460593 NAPGQ99747 312 aaPredicted RBP13.31□□□□□ -0.28
CPSF3-202ENST00000460593 HOOK1Q9UJC3 728 aaKnown RBP13.31□□□□□ -0.28
CPSF3-202ENST00000460593 ANKARQ7Z5J8 1434 aa13.31□□□□□ -0.28
CPSF3-202ENST00000460593 PPP6R2O75170 966 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 PPFIA4O75335 1185 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 IBSPP21815 317 aaPredicted RBP13.3□□□□□ -0.28
CPSF3-202ENST00000460593 GGCXP38435 758 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 APTXQ7Z2E3 356 aaKnown RBP13.3□□□□□ -0.28
CPSF3-202ENST00000460593 TADA2BQ86TJ2 420 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 NUTM2AQ8IVF1 878 aaPredicted RBP13.3□□□□□ -0.28
CPSF3-202ENST00000460593 SLC26A6Q9BXS9 759 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 SAMM50Q9Y512 469 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 KDM3BQ7LBC6 1761 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 A0A1B0GTH6 734 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 EXOC5O00471 708 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 RPS6KA5O75582 802 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 GYPCP04921 128 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 TRDNQ13061 729 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 ENOX1Q8TC92 643 aaKnown RBP13.3□□□□□ -0.28
CPSF3-202ENST00000460593 ZNF496Q96IT1 587 aaPredicted RBP13.3□□□□□ -0.28
CPSF3-202ENST00000460593 NCAPGQ9BPX3 1015 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 YY1AP1Q9H869 796 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 MKRN1Q9UHC7 482 aaKnown RBP13.3□□□□□ -0.28
CPSF3-202ENST00000460593 B4E1Z4 1266 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 MFAP3LO75121 409 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 TOB1P50616 345 aaPredicted RBP13.3□□□□□ -0.28
CPSF3-202ENST00000460593 NR5A1Q13285 461 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 MORC3Q14149 939 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 ARHGEF25Q86VW2 580 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 TBC1D10CQ8IV04 446 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 KRI1Q8N9T8 703 aaKnown RBP13.3□□□□□ -0.28
CPSF3-202ENST00000460593 NCOA7Q8NI08 942 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 MMS19Q96T76 1030 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 NBPF3Q9H094 633 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 KAT14Q9H8E8 782 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 PCDHB6Q9Y5E3 794 aa13.3□□□□□ -0.28
CPSF3-202ENST00000460593 ARHGAP25P42331 645 aa13.29□□□□□ -0.28
CPSF3-202ENST00000460593 NFXL1Q6ZNB6 911 aa13.29□□□□□ -0.28
CPSF3-202ENST00000460593 SMARCC1Q92922 1105 aaPredicted RBP13.29□□□□□ -0.28
CPSF3-202ENST00000460593 MYCBPQ99417 103 aaPredicted RBP13.29□□□□□ -0.28
CPSF3-202ENST00000460593 CHP1Q99653 195 aa13.29□□□□□ -0.28
CPSF3-202ENST00000460593 VPS16Q9H269 839 aa13.29□□□□□ -0.28
CPSF3-202ENST00000460593 ZNF213O14771 459 aa13.29□□□□□ -0.28
CPSF3-202ENST00000460593 PRPF6O94906 941 aaKnown RBP13.29□□□□□ -0.28
CPSF3-202ENST00000460593 APPP05067 770 aa13.29□□□□□ -0.28
CPSF3-202ENST00000460593 DPYDQ12882 1025 aa13.29□□□□□ -0.28
CPSF3-202ENST00000460593 RASGRP2Q7LDG7 609 aa13.29□□□□□ -0.28
CPSF3-202ENST00000460593 GPIHBP1Q8IV16 184 aa13.29□□□□□ -0.28
CPSF3-202ENST00000460593 PANX2Q96RD6 677 aa13.29□□□□□ -0.28
CPSF3-202ENST00000460593 MYO6Q9UM54 1294 aa13.29□□□□□ -0.28
CPSF3-202ENST00000460593 MED1Q15648 1581 aaPredicted RBP13.29□□□□□ -0.28
CPSF3-202ENST00000460593 MRC1P22897 1456 aa13.28□□□□□ -0.28
CPSF3-202ENST00000460593 A0A087X0B3 334 aa13.28□□□□□ -0.28
CPSF3-202ENST00000460593 FAM205CA6NFA0 338 aa13.28□□□□□ -0.28
CPSF3-202ENST00000460593 ZNF790Q6PG37 636 aa13.28□□□□□ -0.28
CPSF3-202ENST00000460593 HPCAL4Q9UM19 191 aa13.28□□□□□ -0.28
CPSF3-202ENST00000460593 DIP2BQ9P265 1576 aa13.28□□□□□ -0.28
CPSF3-202ENST00000460593 POTEB2H3BUK9 544 aa13.28□□□□□ -0.28
CPSF3-202ENST00000460593 ZNF185O15231 689 aa13.28□□□□□ -0.28
CPSF3-202ENST00000460593 FAM69CQ0P6D2 419 aa13.28□□□□□ -0.28
CPSF3-202ENST00000460593 UBN2Q6ZU65 1347 aa13.28□□□□□ -0.28
CPSF3-202ENST00000460593 ZAP70P43403 619 aa13.28□□□□□ -0.28
CPSF3-202ENST00000460593 MAPK8IP1Q9UQF2 711 aa13.28□□□□□ -0.28
CPSF3-202ENST00000460593 HEG1Q9ULI3 1381 aa13.28□□□□□ -0.28
CPSF3-202ENST00000460593 RGPD2P0DJD1 1756 aa13.27□□□□□ -0.28
CPSF3-202ENST00000460593 GPAA1O43292 621 aa13.27□□□□□ -0.28
CPSF3-202ENST00000460593 ATP1A1P05023 1023 aaKnown RBP13.27□□□□□ -0.28
CPSF3-202ENST00000460593 IARSP41252 1262 aaKnown RBP13.27□□□□□ -0.28
CPSF3-202ENST00000460593 MNAT1P51948 309 aa13.27□□□□□ -0.28
CPSF3-202ENST00000460593 TRIM29Q14134 588 aa13.27□□□□□ -0.28
CPSF3-202ENST00000460593 RABL6Q3YEC7 729 aaPredicted RBP13.27□□□□□ -0.28
CPSF3-202ENST00000460593 MLKLQ8NB16 471 aa13.27□□□□□ -0.28
CPSF3-202ENST00000460593 OXER1Q8TDS5 423 aa13.27□□□□□ -0.28
CPSF3-202ENST00000460593 ANKRD24Q8TF21 1146 aa13.27□□□□□ -0.28
CPSF3-202ENST00000460593 EPSTI1Q96J88 318 aa13.27□□□□□ -0.28
CPSF3-202ENST00000460593 NUP88Q99567 741 aaPredicted RBP13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms