RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 PPARAQ07869 468 aa16.62■□□□□ 0.25
PTPRU-205ENST00000460170 NOC4LQ9BVI4 516 aaKnown RBP16.62■□□□□ 0.25
PTPRU-205ENST00000460170 VPS54Q9P1Q0 977 aa16.62■□□□□ 0.25
PTPRU-205ENST00000460170 TTF2Q9UNY4 1162 aaKnown RBP16.62■□□□□ 0.25
PTPRU-205ENST00000460170 PPP2R3AQ06190 1150 aa16.62■□□□□ 0.25
PTPRU-205ENST00000460170 SCLT1Q96NL6 688 aa16.62■□□□□ 0.25
PTPRU-205ENST00000460170 NAP1L4Q99733 375 aaKnown RBP16.62■□□□□ 0.25
PTPRU-205ENST00000460170 CCNL1Q9UK58 526 aaPredicted RBP16.62■□□□□ 0.25
PTPRU-205ENST00000460170 HS2ST1Q7LGA3 356 aa16.62■□□□□ 0.25
PTPRU-205ENST00000460170 SPHKAPQ2M3C7 1700 aa16.62■□□□□ 0.25
PTPRU-205ENST00000460170 CIAO1O76071 339 aa16.61■□□□□ 0.25
PTPRU-205ENST00000460170 CMA1P23946 247 aa16.61■□□□□ 0.25
PTPRU-205ENST00000460170 USP37Q86T82 979 aa16.61■□□□□ 0.25
PTPRU-205ENST00000460170 NOSTRINQ8IVI9 506 aa16.61■□□□□ 0.25
PTPRU-205ENST00000460170 PCDHA7Q9UN72 937 aa16.61■□□□□ 0.25
PTPRU-205ENST00000460170 hCG_1642624A0A1W2PR95 340 aa16.61■□□□□ 0.25
PTPRU-205ENST00000460170 PI4K2BQ8TCG2 481 aa16.61■□□□□ 0.25
PTPRU-205ENST00000460170 LMBR1Q8WVP7 490 aa16.61■□□□□ 0.25
PTPRU-205ENST00000460170 PLVAPQ9BX97 442 aa16.61■□□□□ 0.25
PTPRU-205ENST00000460170 PUS3Q9BZE2 481 aaKnown RBP16.61■□□□□ 0.25
PTPRU-205ENST00000460170 ZMYM6O95789 1325 aa16.61■□□□□ 0.25
PTPRU-205ENST00000460170 PNOCQ13519 176 aa16.61■□□□□ 0.25
PTPRU-205ENST00000460170 CSGALNACT2Q8N6G5 542 aa16.61■□□□□ 0.25
PTPRU-205ENST00000460170 FBXO18Q8NFZ0 1043 aa16.61■□□□□ 0.25
PTPRU-205ENST00000460170 RBM17Q96I25 401 aaKnown RBP16.61■□□□□ 0.25
PTPRU-205ENST00000460170 EYA3Q99504 573 aa16.61■□□□□ 0.25
PTPRU-205ENST00000460170 CNNM4Q6P4Q7 775 aa16.61■□□□□ 0.25
PTPRU-205ENST00000460170 CERS3Q8IU89 383 aa16.61■□□□□ 0.25
PTPRU-205ENST00000460170 CCDC65Q8IXS2 484 aa16.61■□□□□ 0.25
PTPRU-205ENST00000460170 TIGD1Q96MW7 591 aa16.61■□□□□ 0.25
PTPRU-205ENST00000460170 TRAF5O00463 557 aa16.6■□□□□ 0.25
PTPRU-205ENST00000460170 FAM13AO94988 1023 aa16.6■□□□□ 0.25
PTPRU-205ENST00000460170 WDR78Q5VTH9 848 aa16.6■□□□□ 0.25
PTPRU-205ENST00000460170 CYP26C1Q6V0L0 522 aa16.6■□□□□ 0.25
PTPRU-205ENST00000460170 SERTAD1Q9UHV2 236 aa16.6■□□□□ 0.25
PTPRU-205ENST00000460170 SMC1AQ14683 1233 aaKnown RBP16.6■□□□□ 0.25
PTPRU-205ENST00000460170 BICD1Q96G01 975 aa16.6■□□□□ 0.25
PTPRU-205ENST00000460170 GPCPD1Q9NPB8 672 aa16.6■□□□□ 0.25
PTPRU-205ENST00000460170 GLI2P10070 1586 aa16.6■□□□□ 0.25
PTPRU-205ENST00000460170 ERBB3P21860 1342 aa16.6■□□□□ 0.25
PTPRU-205ENST00000460170 OPA1O60313 960 aa16.6■□□□□ 0.25
PTPRU-205ENST00000460170 CTNNA2P26232 953 aa16.6■□□□□ 0.25
PTPRU-205ENST00000460170 UBE3CQ15386 1083 aa16.6■□□□□ 0.25
PTPRU-205ENST00000460170 PAF1Q8N7H5 531 aa16.6■□□□□ 0.25
PTPRU-205ENST00000460170 CARD6Q9BX69 1037 aa16.6■□□□□ 0.25
PTPRU-205ENST00000460170 MAP3K15Q6ZN16 1313 aa16.6■□□□□ 0.25
PTPRU-205ENST00000460170 CCNT1O60563 726 aaKnown RBP16.6■□□□□ 0.25
PTPRU-205ENST00000460170 PRPHP41219 470 aa16.59■□□□□ 0.25
PTPRU-205ENST00000460170 NONOQ15233 471 aaKnown RBP eCLIP16.59■□□□□ 0.25
PTPRU-205ENST00000460170 HOOK3Q86VS8 718 aa16.59■□□□□ 0.25
PTPRU-205ENST00000460170 TRMT44Q8IYL2 757 aaKnown RBP16.59■□□□□ 0.25
PTPRU-205ENST00000460170 PDE8BO95263 885 aa16.59■□□□□ 0.25
PTPRU-205ENST00000460170 EZRP15311 586 aaKnown RBP16.59■□□□□ 0.25
PTPRU-205ENST00000460170 MTX1Q13505 466 aa16.59■□□□□ 0.25
PTPRU-205ENST00000460170 KRT25Q7Z3Z0 450 aa16.59■□□□□ 0.25
PTPRU-205ENST00000460170 TMTC1Q8IUR5 882 aa16.59■□□□□ 0.25
PTPRU-205ENST00000460170 FANCBQ8NB91 859 aa16.59■□□□□ 0.25
PTPRU-205ENST00000460170 MRFAP1L1Q96HT8 127 aa16.59■□□□□ 0.25
PTPRU-205ENST00000460170 NAPGQ99747 312 aaPredicted RBP16.59■□□□□ 0.25
PTPRU-205ENST00000460170 GGA1Q9UJY5 639 aa16.59■□□□□ 0.25
PTPRU-205ENST00000460170 PNPLA6Q8IY17 1366 aa16.59■□□□□ 0.25
PTPRU-205ENST00000460170 USP17L12C9JPN9 530 aa16.59■□□□□ 0.25
PTPRU-205ENST00000460170 USP17L21D6R901 530 aa16.59■□□□□ 0.25
PTPRU-205ENST00000460170 SASH1O94885 1247 aa16.59■□□□□ 0.25
PTPRU-205ENST00000460170 ADORA1P30542 326 aa16.59■□□□□ 0.25
PTPRU-205ENST00000460170 RPS8P62241 208 aaKnown RBP16.59■□□□□ 0.25
PTPRU-205ENST00000460170 TFAP4Q01664 338 aa16.59■□□□□ 0.25
PTPRU-205ENST00000460170 TUBB2AQ13885 445 aa16.59■□□□□ 0.25
PTPRU-205ENST00000460170 TUBB2BQ9BVA1 445 aa16.59■□□□□ 0.25
PTPRU-205ENST00000460170 U2AF2P26368 475 aaKnown RBP eCLIP16.59■□□□□ 0.251e-6■■■□□ 16.3
PTPRU-205ENST00000460170 TXKP42681 527 aa16.59■□□□□ 0.25
PTPRU-205ENST00000460170 TSGA10Q9BZW7 698 aa16.59■□□□□ 0.25
PTPRU-205ENST00000460170 GREM2Q9H772 168 aa16.59■□□□□ 0.25
PTPRU-205ENST00000460170 KRT9P35527 623 aa16.58■□□□□ 0.25
PTPRU-205ENST00000460170 SPECC1LQ69YQ0 1117 aa16.58■□□□□ 0.25
PTPRU-205ENST00000460170 RPL13P26373 211 aaKnown RBP16.58■□□□□ 0.24
PTPRU-205ENST00000460170 PTPN12Q05209 780 aaKnown RBP16.58■□□□□ 0.24
PTPRU-205ENST00000460170 LRMPQ12912 555 aa16.58■□□□□ 0.24
PTPRU-205ENST00000460170 STAMQ92783 540 aa16.58■□□□□ 0.24
PTPRU-205ENST00000460170 IVLP07476 585 aa16.58■□□□□ 0.24
PTPRU-205ENST00000460170 ELF2Q15723 593 aa16.58■□□□□ 0.24
PTPRU-205ENST00000460170 LZTS2Q9BRK4 669 aa16.58■□□□□ 0.24
PTPRU-205ENST00000460170 CAPN2P17655 700 aa16.58■□□□□ 0.24
PTPRU-205ENST00000460170 ARID4AP29374 1257 aaPredicted RBP16.58■□□□□ 0.24
PTPRU-205ENST00000460170 RBM6P78332 1123 aaKnown RBP16.58■□□□□ 0.24
PTPRU-205ENST00000460170 NSUN7Q8NE18 718 aaKnown RBP16.58■□□□□ 0.24
PTPRU-205ENST00000460170 A0A1W2PQ27 194 aa16.57■□□□□ 0.24
PTPRU-205ENST00000460170 A0A1W2PQ64 194 aa16.57■□□□□ 0.24
PTPRU-205ENST00000460170 A0A1W2PQD8 194 aa16.57■□□□□ 0.24
PTPRU-205ENST00000460170 NECTIN1Q15223 517 aa16.57■□□□□ 0.24
PTPRU-205ENST00000460170 GIGYF2Q6Y7W6 1299 aaKnown RBP16.57■□□□□ 0.24
PTPRU-205ENST00000460170 DNAI2Q9GZS0 605 aa16.57■□□□□ 0.24
PTPRU-205ENST00000460170 TAB2Q9NYJ8 693 aa16.57■□□□□ 0.24
PTPRU-205ENST00000460170 RTEL1Q9NZ71 1219 aa16.57■□□□□ 0.24
PTPRU-205ENST00000460170 MAST3O60307 1309 aa16.57■□□□□ 0.24
PTPRU-205ENST00000460170 A2ML1A8K2U0 1454 aa16.57■□□□□ 0.24
PTPRU-205ENST00000460170 BCAMP50895 628 aa16.57■□□□□ 0.24
PTPRU-205ENST00000460170 VAV2P52735 878 aa16.57■□□□□ 0.24
PTPRU-205ENST00000460170 FAM47AQ5JRC9 791 aa16.57■□□□□ 0.24
PTPRU-205ENST00000460170 HDXQ7Z353 690 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms