RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 ZHX2Q9Y6X8 837 aa25.82■■□□□ 1.72
HMGB3-205ENST00000455596 FLT1P17948 1338 aa25.82■■□□□ 1.72
HMGB3-205ENST00000455596 YTHDC1Q96MU7 727 aaKnown RBP25.81■■□□□ 1.72
HMGB3-205ENST00000455596 HERC5Q9UII4 1024 aaKnown RBP25.81■■□□□ 1.72
HMGB3-205ENST00000455596 TLR2O60603 784 aa25.8■■□□□ 1.72
HMGB3-205ENST00000455596 OTOP1Q7RTM1 612 aa25.8■■□□□ 1.72
HMGB3-205ENST00000455596 MIGA1Q8NAN2 632 aa25.8■■□□□ 1.72
HMGB3-205ENST00000455596 DNAJC2Q99543 621 aaKnown RBP25.8■■□□□ 1.72
HMGB3-205ENST00000455596 AFG3L2Q9Y4W6 797 aa25.8■■□□□ 1.72
HMGB3-205ENST00000455596 NAV1Q8NEY1 1877 aa25.8■■□□□ 1.72
HMGB3-205ENST00000455596 PDHXO00330 501 aa25.79■■□□□ 1.72
HMGB3-205ENST00000455596 RRP1P56182 461 aaKnown RBP25.79■■□□□ 1.72
HMGB3-205ENST00000455596 ZSWIM8A7E2V4 1837 aa25.79■■□□□ 1.72
HMGB3-205ENST00000455596 GOLIM4O00461 696 aa25.78■■□□□ 1.72
HMGB3-205ENST00000455596 MOGSQ13724 837 aa25.78■■□□□ 1.72
HMGB3-205ENST00000455596 A0A0G2JLL6 359 aaPredicted RBP25.77■■□□□ 1.72
HMGB3-205ENST00000455596 ATP5JP18859 108 aa25.77■■□□□ 1.72
HMGB3-205ENST00000455596 CAP2P40123 477 aa25.77■■□□□ 1.72
HMGB3-205ENST00000455596 USP5P45974 858 aa25.77■■□□□ 1.72
HMGB3-205ENST00000455596 FASTKD5Q7L8L6 764 aaKnown RBP25.77■■□□□ 1.72
HMGB3-205ENST00000455596 PRRT2Q7Z6L0 340 aaPredicted RBP25.77■■□□□ 1.72
HMGB3-205ENST00000455596 EFCC1Q9HA90 598 aa25.77■■□□□ 1.72
HMGB3-205ENST00000455596 PALD1Q9ULE6 856 aa25.77■■□□□ 1.72
HMGB3-205ENST00000455596 LOC285556D6RIA3 1793 aa25.77■■□□□ 1.72
HMGB3-205ENST00000455596 HLA-DOAP06340 250 aa25.76■■□□□ 1.71
HMGB3-205ENST00000455596 RGS19P49795 217 aa25.76■■□□□ 1.71
HMGB3-205ENST00000455596 ARHGEF6Q15052 776 aa25.76■■□□□ 1.71
HMGB3-205ENST00000455596 SLC9C2Q5TAH2 1124 aa25.76■■□□□ 1.71
HMGB3-205ENST00000455596 FOXP4Q8IVH2 680 aaPredicted RBP25.76■■□□□ 1.71
HMGB3-205ENST00000455596 CRACR2BQ8N4Y2 399 aaPredicted RBP25.76■■□□□ 1.71
HMGB3-205ENST00000455596 TRIM34Q9BYJ4 488 aa25.76■■□□□ 1.71
HMGB3-205ENST00000455596 BOLA2Q9H3K6 86 aa25.76■■□□□ 1.71
HMGB3-205ENST00000455596 FRMD4AQ9P2Q2 1039 aaPredicted RBP25.76■■□□□ 1.71
HMGB3-205ENST00000455596 SAP30BPQ9UHR5 308 aaKnown RBP25.76■■□□□ 1.71
HMGB3-205ENST00000455596 DDX60LQ5H9U9 1706 aaKnown RBP25.76■■□□□ 1.71
HMGB3-205ENST00000455596 MGAMO43451 1857 aa25.76■■□□□ 1.71
HMGB3-205ENST00000455596 SMARCA5O60264 1052 aaPredicted RBP25.75■■□□□ 1.71
HMGB3-205ENST00000455596 PDE6AP16499 860 aa25.75■■□□□ 1.71
HMGB3-205ENST00000455596 TBC1D2Q9BYX2 928 aa25.75■■□□□ 1.71
HMGB3-205ENST00000455596 DCTPP1Q9H773 170 aa25.75■■□□□ 1.71
HMGB3-205ENST00000455596 PAG1Q9NWQ8 432 aa25.75■■□□□ 1.71
HMGB3-205ENST00000455596 TRIM75PA6NK02 468 aa25.74■■□□□ 1.71
HMGB3-205ENST00000455596 GPAT2Q6NUI2 795 aa25.74■■□□□ 1.71
HMGB3-205ENST00000455596 GADL1Q6ZQY3 521 aa25.74■■□□□ 1.71
HMGB3-205ENST00000455596 CCDC84Q86UT8 332 aaPredicted RBP25.74■■□□□ 1.71
HMGB3-205ENST00000455596 METTL16Q86W50 562 aaKnown RBP25.74■■□□□ 1.71
HMGB3-205ENST00000455596 MAGEB6P1A0A0J9YX57 407 aa25.73■■□□□ 1.71
HMGB3-205ENST00000455596 RRP1BQ14684 758 aaKnown RBP25.73■■□□□ 1.71
HMGB3-205ENST00000455596 KIF22Q14807 665 aa25.73■■□□□ 1.71
HMGB3-205ENST00000455596 EDC3Q96F86 508 aaKnown RBP25.73■■□□□ 1.71
HMGB3-205ENST00000455596 PARK7Q99497 189 aaKnown RBP25.73■■□□□ 1.71
HMGB3-205ENST00000455596 HAUS7Q99871 368 aa25.73■■□□□ 1.71
HMGB3-205ENST00000455596 RIOK1Q9BRS2 568 aaKnown RBP25.73■■□□□ 1.71
HMGB3-205ENST00000455596 PTPN22Q9Y2R2 807 aa25.73■■□□□ 1.71
HMGB3-205ENST00000455596 ZNF532Q9HCE3 1301 aa25.72■■□□□ 1.71
HMGB3-205ENST00000455596 CAP1Q01518 475 aa25.72■■□□□ 1.71
HMGB3-205ENST00000455596 C17orf99Q6UX52 265 aa25.72■■□□□ 1.71
HMGB3-205ENST00000455596 DNAJC18Q9H819 358 aa25.72■■□□□ 1.71
HMGB3-205ENST00000455596 CPA4Q9UI42 421 aa25.72■■□□□ 1.71
HMGB3-205ENST00000455596 MYH8P13535 1937 aa25.72■■□□□ 1.71
HMGB3-205ENST00000455596 ADGRA2Q96PE1 1338 aa25.71■■□□□ 1.71
HMGB3-205ENST00000455596 USP17L5A8MUK1 530 aa25.71■■□□□ 1.71
HMGB3-205ENST00000455596 SOX10P56693 466 aa25.71■■□□□ 1.71
HMGB3-205ENST00000455596 LACTBP83111 547 aaPredicted RBP25.71■■□□□ 1.71
HMGB3-205ENST00000455596 SLC4A8Q2Y0W8 1093 aa25.71■■□□□ 1.71
HMGB3-205ENST00000455596 AS3MTQ9HBK9 375 aa25.71■■□□□ 1.71
HMGB3-205ENST00000455596 SLC45A1Q9Y2W3 748 aa25.71■■□□□ 1.71
HMGB3-205ENST00000455596 ASNSP08243 561 aa25.7■■□□□ 1.7
HMGB3-205ENST00000455596 MLLT1Q03111 559 aaPredicted RBP25.7■■□□□ 1.7
HMGB3-205ENST00000455596 SPP2Q13103 211 aa25.7■■□□□ 1.7
HMGB3-205ENST00000455596 ZNF280CQ8ND82 737 aa25.7■■□□□ 1.7
HMGB3-205ENST00000455596 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.7■■□□□ 1.7
HMGB3-205ENST00000455596 PCDHB15Q9Y5E8 787 aa25.7■■□□□ 1.7
HMGB3-205ENST00000455596 BAZ2AQ9UIF9 1905 aaKnown RBP25.69■■□□□ 1.7
HMGB3-205ENST00000455596 TCRBV5S4A2TA0A5A2 114 aa25.69■■□□□ 1.7
HMGB3-205ENST00000455596 CYP2C8P10632 490 aa25.69■■□□□ 1.7
HMGB3-205ENST00000455596 TTC6Q86TZ1 520 aa25.69■■□□□ 1.7
HMGB3-205ENST00000455596 CRNKL1Q9BZJ0 848 aaKnown RBP25.69■■□□□ 1.7
HMGB3-205ENST00000455596 AGTPBP1Q9UPW5 1226 aa25.69■■□□□ 1.7
HMGB3-205ENST00000455596 PROCA1Q8NCQ7 364 aaPredicted RBP25.68■■□□□ 1.7
HMGB3-205ENST00000455596 ARHGAP39Q9C0H5 1083 aa25.68■■□□□ 1.7
HMGB3-205ENST00000455596 ECHDC1Q9NTX5 307 aa25.68■■□□□ 1.7
HMGB3-205ENST00000455596 GINM1Q9NU53 330 aa25.68■■□□□ 1.7
HMGB3-205ENST00000455596 RBBP6Q7Z6E9 1792 aaKnown RBP25.67■■□□□ 1.7
HMGB3-205ENST00000455596 GNRH1P01148 92 aa25.67■■□□□ 1.7
HMGB3-205ENST00000455596 ADD2P35612 726 aa25.67■■□□□ 1.7
HMGB3-205ENST00000455596 GPATCH3Q96I76 525 aa25.67■■□□□ 1.7
HMGB3-205ENST00000455596 CRBNQ96SW2 442 aa25.67■■□□□ 1.7
HMGB3-205ENST00000455596 EHD4Q9H223 541 aa25.67■■□□□ 1.7
HMGB3-205ENST00000455596 SERPINB13Q9UIV8 391 aa25.67■■□□□ 1.7
HMGB3-205ENST00000455596 GDF11O95390 407 aa25.66■■□□□ 1.7
HMGB3-205ENST00000455596 WDR18Q9BV38 432 aa25.66■■□□□ 1.7
HMGB3-205ENST00000455596 POLR3DP05423 398 aaPredicted RBP25.65■■□□□ 1.7
HMGB3-205ENST00000455596 HMGCS2P54868 508 aa25.65■■□□□ 1.7
HMGB3-205ENST00000455596 LCORLQ8N3X6 602 aa25.65■■□□□ 1.7
HMGB3-205ENST00000455596 PNMA3Q9UL41 463 aa25.65■■□□□ 1.7
HMGB3-205ENST00000455596 ZBTB21Q9ULJ3 1066 aa25.65■■□□□ 1.7
HMGB3-205ENST00000455596 BCRP11274 1271 aa25.64■■□□□ 1.7
HMGB3-205ENST00000455596 JAG1P78504 1218 aa25.64■■□□□ 1.7
HMGB3-205ENST00000455596 SH3D19Q5HYK7 790 aa25.64■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms