RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 PPP2R3BQ9Y5P8 575 aa10.54□□□□□ -0.72
COL28A1-205ENST00000453441 MYH7P12883 1935 aa10.54□□□□□ -0.72
COL28A1-205ENST00000453441 MROH7-TTC4A0A0A0MT08 1334 aa10.54□□□□□ -0.72
COL28A1-205ENST00000453441 GPR75-ASB3A0A0A6YYF3 556 aa10.53□□□□□ -0.72
COL28A1-205ENST00000453441 SHTN1A0MZ66 631 aa10.53□□□□□ -0.72
COL28A1-205ENST00000453441 IDH1O75874 414 aaKnown RBP10.53□□□□□ -0.72
COL28A1-205ENST00000453441 TNNI2P48788 182 aa10.53□□□□□ -0.72
COL28A1-205ENST00000453441 HIRAP54198 1017 aaPredicted RBP10.53□□□□□ -0.72
COL28A1-205ENST00000453441 UBE3CQ15386 1083 aa10.53□□□□□ -0.72
COL28A1-205ENST00000453441 GRIK5Q16478 980 aa10.53□□□□□ -0.72
COL28A1-205ENST00000453441 RBM26Q5T8P6 1007 aaKnown RBP10.53□□□□□ -0.72
COL28A1-205ENST00000453441 TBC1D9Q6ZT07 1266 aa10.53□□□□□ -0.72
COL28A1-205ENST00000453441 CDC37L1Q7L3B6 337 aa10.53□□□□□ -0.72
COL28A1-205ENST00000453441 SULF1Q8IWU6 871 aa10.53□□□□□ -0.72
COL28A1-205ENST00000453441 KBTBD3Q8NAB2 608 aa10.53□□□□□ -0.72
COL28A1-205ENST00000453441 TTC13Q8NBP0 860 aa10.53□□□□□ -0.72
COL28A1-205ENST00000453441 EVI5LQ96CN4 794 aa10.53□□□□□ -0.72
COL28A1-205ENST00000453441 KCTD12Q96CX2 325 aaKnown RBP10.53□□□□□ -0.72
COL28A1-205ENST00000453441 PIH1D3Q9NQM4 214 aaKnown RBP10.53□□□□□ -0.72
COL28A1-205ENST00000453441 HCSTQ9UBK5 93 aa10.53□□□□□ -0.72
COL28A1-205ENST00000453441 DAGLAQ9Y4D2 1042 aa10.53□□□□□ -0.72
COL28A1-205ENST00000453441 PPP4CP60510 307 aa10.52□□□□□ -0.73
COL28A1-205ENST00000453441 CNTROBQ8N137 903 aa10.52□□□□□ -0.73
COL28A1-205ENST00000453441 OTUD7AQ8TE49 926 aaPredicted RBP10.52□□□□□ -0.73
COL28A1-205ENST00000453441 GGA3Q9NZ52 723 aa10.52□□□□□ -0.73
COL28A1-205ENST00000453441 MYO5AQ9Y4I1 1855 aaKnown RBP10.51□□□□□ -0.73
COL28A1-205ENST00000453441 HIP1O00291 1037 aa10.51□□□□□ -0.73
COL28A1-205ENST00000453441 EGFRP00533 1210 aa10.51□□□□□ -0.73
COL28A1-205ENST00000453441 PDE6AP16499 860 aa10.51□□□□□ -0.73
COL28A1-205ENST00000453441 CYP7A1P22680 504 aa10.51□□□□□ -0.73
COL28A1-205ENST00000453441 DIXDC1Q155Q3 683 aa10.51□□□□□ -0.73
COL28A1-205ENST00000453441 NBPF9Q3BBW0 867 aa10.51□□□□□ -0.73
COL28A1-205ENST00000453441 SLC9C2Q5TAH2 1124 aa10.51□□□□□ -0.73
COL28A1-205ENST00000453441 ANGEL2Q5VTE6 544 aaKnown RBP10.51□□□□□ -0.73
COL28A1-205ENST00000453441 APOBEC3HQ6NTF7 200 aaKnown RBP10.51□□□□□ -0.73
COL28A1-205ENST00000453441 FAM83AQ86UY5 434 aa10.51□□□□□ -0.73
COL28A1-205ENST00000453441 MAGEB6Q8N7X4 407 aa10.51□□□□□ -0.73
COL28A1-205ENST00000453441 WNT2BQ93097 391 aa10.51□□□□□ -0.73
COL28A1-205ENST00000453441 HOOK2Q96ED9 719 aa10.51□□□□□ -0.73
COL28A1-205ENST00000453441 PRMT6Q96LA8 375 aaPredicted RBP10.51□□□□□ -0.73
COL28A1-205ENST00000453441 ANTXR1Q9H6X2 564 aa10.51□□□□□ -0.73
COL28A1-205ENST00000453441 ZNF70Q9UC06 446 aaPredicted RBP10.51□□□□□ -0.73
COL28A1-205ENST00000453441 FAM198AQ9UFP1 575 aa10.51□□□□□ -0.73
COL28A1-205ENST00000453441 RPAP1Q9BWH6 1393 aaPredicted RBP10.51□□□□□ -0.73
COL28A1-205ENST00000453441 ENTPD3O75355 529 aa10.5□□□□□ -0.73
COL28A1-205ENST00000453441 ADD2P35612 726 aa10.5□□□□□ -0.73
COL28A1-205ENST00000453441 BTDP43251 543 aa10.5□□□□□ -0.73
COL28A1-205ENST00000453441 TSHZ3Q63HK5 1081 aa10.5□□□□□ -0.73
COL28A1-205ENST00000453441 KRT26Q7Z3Y9 468 aa10.5□□□□□ -0.73
COL28A1-205ENST00000453441 TATDN2Q93075 761 aa10.5□□□□□ -0.73
COL28A1-205ENST00000453441 ZFRQ96KR1 1074 aaKnown RBP10.5□□□□□ -0.73
COL28A1-205ENST00000453441 FSD1Q9BTV5 496 aa10.5□□□□□ -0.73
COL28A1-205ENST00000453441 IDI2Q9BXS1 227 aa10.5□□□□□ -0.73
COL28A1-205ENST00000453441 USP40Q9NVE5 1235 aa10.5□□□□□ -0.73
COL28A1-205ENST00000453441 NDUFB9Q9Y6M9 179 aa10.5□□□□□ -0.73
COL28A1-205ENST00000453441 POLR2AP24928 1970 aaKnown RBP10.5□□□□□ -0.73
COL28A1-205ENST00000453441 COL2A1P02458 1487 aaPredicted RBP10.49□□□□□ -0.73
COL28A1-205ENST00000453441 AK9Q5TCS8 1911 aa10.49□□□□□ -0.73
COL28A1-205ENST00000453441 RNF113AO15541 343 aaKnown RBP10.49□□□□□ -0.73
COL28A1-205ENST00000453441 NF2P35240 595 aa10.49□□□□□ -0.73
COL28A1-205ENST00000453441 TTC22Q5TAA0 569 aa10.49□□□□□ -0.73
COL28A1-205ENST00000453441 MAP1SQ66K74 1059 aaPredicted RBP10.49□□□□□ -0.73
COL28A1-205ENST00000453441 CDC42EP5Q6NZY7 148 aa10.49□□□□□ -0.73
COL28A1-205ENST00000453441 PADI6Q6TGC4 694 aa10.49□□□□□ -0.73
COL28A1-205ENST00000453441 ANKK1Q8NFD2 765 aa10.49□□□□□ -0.73
COL28A1-205ENST00000453441 ZNF384Q8TF68 577 aa10.49□□□□□ -0.73
COL28A1-205ENST00000453441 APPBP2Q92624 585 aa10.49□□□□□ -0.73
COL28A1-205ENST00000453441 TDRD3Q9H7E2 651 aaKnown RBP10.49□□□□□ -0.73
COL28A1-205ENST00000453441 VEZTQ9HBM0 779 aa10.49□□□□□ -0.73
COL28A1-205ENST00000453441 SEPT9Q9UHD8 586 aaPredicted RBP10.49□□□□□ -0.73
COL28A1-205ENST00000453441 ZNF532Q9HCE3 1301 aa10.49□□□□□ -0.73
COL28A1-205ENST00000453441 TRPM7Q96QT4 1865 aa10.49□□□□□ -0.73
COL28A1-205ENST00000453441 MAGEB6P1A0A0J9YX57 407 aa10.48□□□□□ -0.73
COL28A1-205ENST00000453441 TCRBV5S4A2TA0A5A2 114 aa10.48□□□□□ -0.73
COL28A1-205ENST00000453441 CLRN2A0PK11 232 aa10.48□□□□□ -0.73
COL28A1-205ENST00000453441 ITGBL1O95965 494 aaPredicted RBP10.48□□□□□ -0.73
COL28A1-205ENST00000453441 RHBDL3P58872 404 aa10.48□□□□□ -0.73
COL28A1-205ENST00000453441 FKBP1BP68106 108 aa10.48□□□□□ -0.73
COL28A1-205ENST00000453441 SUPT20HL1Q3ZLR7 823 aa10.48□□□□□ -0.73
COL28A1-205ENST00000453441 THSD4Q6ZMP0 1018 aa10.48□□□□□ -0.73
COL28A1-205ENST00000453441 FAM151AQ8WW52 585 aa10.48□□□□□ -0.73
COL28A1-205ENST00000453441 EDC3Q96F86 508 aaKnown RBP10.48□□□□□ -0.73
COL28A1-205ENST00000453441 CRNKL1Q9BZJ0 848 aaKnown RBP10.48□□□□□ -0.73
COL28A1-205ENST00000453441 DEFB129Q9H1M3 183 aa10.48□□□□□ -0.73
COL28A1-205ENST00000453441 PNMA3Q9UL41 463 aa10.48□□□□□ -0.73
COL28A1-205ENST00000453441 PASKQ96RG2 1323 aa10.48□□□□□ -0.73
COL28A1-205ENST00000453441 GNAT2P19087 354 aa10.47□□□□□ -0.73
COL28A1-205ENST00000453441 HIC1Q14526 733 aa10.47□□□□□ -0.73
COL28A1-205ENST00000453441 RASA3Q14644 834 aa10.47□□□□□ -0.73
COL28A1-205ENST00000453441 BMP2KLQ5H9B9 411 aa10.47□□□□□ -0.73
COL28A1-205ENST00000453441 TEX11Q8IYF3 940 aa10.47□□□□□ -0.73
COL28A1-205ENST00000453441 AIDAQ96BJ3 306 aa10.47□□□□□ -0.73
COL28A1-205ENST00000453441 DDRGK1Q96HY6 314 aa10.47□□□□□ -0.73
COL28A1-205ENST00000453441 GLIS2Q9BZE0 524 aaPredicted RBP10.47□□□□□ -0.73
COL28A1-205ENST00000453441 HELLSQ9NRZ9 838 aa10.47□□□□□ -0.73
COL28A1-205ENST00000453441 AATFQ9NY61 560 aaKnown RBP eCLIP10.47□□□□□ -0.73
COL28A1-205ENST00000453441 PCDHAC2Q9Y5I4 1007 aa10.47□□□□□ -0.73
COL28A1-205ENST00000453441 ASTN2O75129 1339 aaPredicted RBP10.47□□□□□ -0.73
COL28A1-205ENST00000453441 FOCADQ5VW36 1801 aa10.47□□□□□ -0.73
COL28A1-205ENST00000453441 UNCXA6NJT0 531 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms